Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daldinia_20eschscholtzii_20[genbank_20GCA_5F000751375.1_202014-09- 06] 1,944 sequences; 35,539,942 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq1592 123 2e-22 seq863 91.5 1e-12 >seq1592 Length=100478 Score = 123 bits (136), Expect = 2e-22 Identities = 674/1065 (63%), Gaps = 17/1065 (2%) Strand=Plus/Minus Query 281417 TTATCAGCGGCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATT 281476 || ||| |||||| || || | ||||| |||||||| | ||| || ||||| |||||| Sbjct 67905 TTCTCAACGGCAGAGACGTTGATGATACCGTTGGCATCGACATCGAAAGTGACCTCAATT 67846 Query 281477 TGAGGGACCCCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTA 281536 |||||||| || | | ||||||||||| || || | || | || || || Sbjct 67845 TGAGGGACACCACGAGGCGCAGGTGGGATACCGGTCAGCTCGAACTTGCCGAGCAGGTTG 67786 Query 281537 TTATCTTTAGTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTA 281596 || || |||||| || || ||||||||| | | ||||||| || | | || || Sbjct 67785 TTGTCCTTAGTGCGTTGACGCTCACCCTCGTAGACTTGGATAAGCACACCGGGCTGGTTG 67726 Query 281597 TCTGAATAAGTTGTAAATACTCTGGATTTTTTACAAGGAATTGTTGTGTTTCTATCAATA 281656 || || | || | || || ||| || || ||||| || ||||||| || Sbjct 67725 TCCGAGAAGGTGGAGAAGACCTCGGACTTCTTGGTGGGAATAGTGGTGTTTCGGGGGATG 67666 Query 281657 ATATTGGTCATAATACCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACT 281716 | |||||||| ||||||||||| || || | ||| | || || || | ||| || | Sbjct 67665 AGCTTGGTCATCATACCACCAGCAGTCTCGATACCGATGGATAGCGGGGCGACGTCGAGA 67606 Query 281717 AGGACAATAT--TTTGAAGTTTTTCATC-AGTTTGACCAACAAGAATAGCTGCTTGAATA 281773 || | || | || | | || | | || | |||| || ||||| || || | Sbjct 67605 AGCAGGATCTCGTTGGTCGACTTGGAGCTGGTGTCACCAGAGAGGATAGCAGCCTGGACG 67546 Query 281774 GCAGCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTG 281833 || ||||| || |||||||| ||||| || || | | || || | | || || ||| Sbjct 67545 GCGGCACCGTAGGCAACAGCCTCATCGGGGTTGATGGATTTGTTGGGCTCCTTGCCGTTG 67486 Query 281834 AAAAAATTTGAAAGAAGTTGTCT-TACCTTAGGAATACGAGATGATCCTCCAACTAATAC 281892 || | | | | || | ||| || || ||||||| || || || || || || Sbjct 67485 AAGTAGTCGGTGATGAGCT-TCTGAACACGGGGGATACGAGTGGAACCACCGACCAAGAC 67427 Query 281893 AATTTCATGCACCTGTGATTTATCCAGTTTTGAATC--CAATAAAACTTTTTCAACGGGT 281950 ||| || || || || || || || | || | || ||| | || || ||||| Sbjct 67426 AATCTCGTGGACTTGAGACTTGTCAATCTTGGCGTCGGCAAGGACAC--GGTCGACGGGC 67369 Query 281951 TCAAGACCAGCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTG 282010 | | | || || | || ||||| || |||||| || | || || | Sbjct 67368 TGGATGGTGGATCGGAAGAGATCCTGGCAAAGCTCCTCGAATCGGGCACGGGT--GATGG 67311 Query 282011 ACAT-TATAA-TCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAG 282068 | | || || ||||| || ||||| | ||| || | ||||| | || |||| |||| Sbjct 67310 AGGTGTAGAAGTCAATACCCTCGAATAGAGAGTCGATCTCAATGGAGGTCTGAGCAGAAG 67251 Query 282069 AAGATAGTGCACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGC-- 282126 | || || | || || ||||| || || || || | || | ||| | || || Sbjct 67250 AGGAAAGAGTGCGCTTGGCACGCTCGCAAGCGGTTCGGAGACGTCGCAGAGCACGGGCGT 67191 Query 282127 TGATTGATTCAAATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAG 282186 || | ||| | ||| | || | || | |||||| || | || | | || || Sbjct 67190 TGGTAGAT--AGATCCTTCTTGTGCTTGCGCTTGAACTCGTTCACGAAGTGGTTGACTAG 67133 Query 282187 ACGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAA 282246 ||| || || || |||||||| ||||| | ||| | || | |||| | || | ||| Sbjct 67132 ACGGTTGTCGAAGTCTTCACCACCCAAGTGAGTGTCACCAGCAGTAGACTTAACCTCGAA 67073 Query 282247 AAGTCCATCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAAT 282306 | || || |||| | | |||| ||||| ||| |||||||| | ||| || || Sbjct 67072 GATACCCTCCTCAATGGTTAGGAGAGACACATCGAAGGTACCACCACCAAGATCGAAGAT 67013 Query 282307 AAGTACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGT 282366 || || || || || || || |||||||| || || | ||||| || || Sbjct 67012 GAGAACGTTGCGCTCACCCTCGGCCTTCTTGTCAAGACCGTAGGCGATGGCAGCGGCTGT 66953 Query 282367 TGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGC 282426 || || || || |||| | || || || |||||||| || || || || || || Sbjct 66952 GGGCTCGTTGATGATTCGGAGGACGTTTAGGCCAGCAATGAGACCGGCGTCCTTGGTAGC 66893 Query 282427 TTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGC 282471 ||| | || || ||||| || || ||||| ||||| || || || Sbjct 66892 TTGACGCTGAGAGTCGTTGAAGTAGGCAGGTACAGTGATGACAGC 66848 >seq863 Length=70956 Score = 91.5 bits (100), Expect = 1e-12 Identities = 86/110 (78%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 432288 GGTAAAGAAGGTCGTATTAGAGGAAATTTGATGGGAAAGCGTGTCGATATGTCTGCACGT 432347 || ||||||||||| | | || || ||||||||||||||||||||| | || || ||| Sbjct 49850 GGAAAAGAAGGTCGGTTACGTGGTAACTTGATGGGAAAGCGTGTCGATTTCTCAGCCCGT 49791 Query 432348 ACAGTTATTACTTCTGATCCTAATATTGCTCTCAATGAAGTTGGTGTTCC 432397 || || || ||| |||| | |||||| | || ||||||| |||||||| Sbjct 49790 ACTGTCATCACTGGTGATGCAAATATTTCGCTTGATGAAGTGGGTGTTCC 49741 Score = 87.8 bits (96), Expect = 1e-11 Identities = 87/113 (77%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 435127 ccTTTTGAATTTTTCTTCCAAGTAATGGCTGGTCGTGAAGGTATTATTAATACAGCTATT 435186 |||| || || |||||||| | |||||||||||||||||| ||||| ||||||| | Sbjct 48413 CCTTCGGAGTTCTTCTTCCACGCCATGGCTGGTCGTGAAGGTCTTATTGATACAGCCGTC 48354 Query 435187 AAAACTGCTGATACTGGTTATATTCAAAGAAAACTTGTCAAGATGCTTGAAGA 435239 ||||| ||||| || |||||||| || | |||||||| |||||||| Sbjct 48353 AAAACCGCTGAAACCGGTTATATCCAGCGCCGTCTTGTCAAAGCCCTTGAAGA 48301 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3740534957815344