Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daldinia_20eschscholtzii_20[genbank_20GCA_5F000751375.1_202014-09- 06] 1,944 sequences; 35,539,942 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq1817 129 6e-25 seq315 118 1e-21 seq600 111 2e-19 >seq1817 Length=26529 Score = 129 bits (142), Expect = 6e-25 Identities = 150/200 (75%), Gaps = 2/200 (1%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 |||||| || ||||| || ||||| |||| || ||| ||| | ||||| || ||||| | Sbjct 16259 GGTGGATTCCTTCTGGATGTTGTAGTCGCTCAGAGTGCGACCA-TCCTCAAGTTGCTTTC 16201 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | ||| |||| | ||||||||||| ||||| ||||||||||| || ||||| | Sbjct 16200 CAGCGAAAATCAATCGCTGCTGGTCAGGAGGAATGCCTTCCTTATCCTGAATCTTGGATT 16141 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 ||| | || | ||||||| || |||||| || | ||||| ||| ||||| || || | Sbjct 16140 TGACGTTGTCGATGGTGTCGGAGGACTCCACCTCAAGGGTGATGGTCTTGCCAGTGAGGG 16081 Query 133642 TTTTTACGAAAATCTGCATG 133661 | || ||||| ||||||||| Sbjct 16080 TCTTGACGAAGATCTGCATG 16061 Score = 102 bits (112), Expect = 8e-17 Identities = 137/188 (73%), Gaps = 2/188 (1%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 || ||||| ||||| || ||||| ||| | || | | | ||||| ||||||||||| Sbjct 16549 GTAGACTCCTTCTGAATGTTGTAGTCGGATAGGGTTCGGCCA-TCCTCAAGCTGCTTGCC 16491 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| |||| | ||||| |||||||||||||| || |||||||| |||||| ||| Sbjct 16490 GGCGAAAATCAATCGCTGTTGGTCGGGAGGGATACCCTCCTTGTCTTGGATCTTCGACTT 16431 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 | | || | ||||| | | |||||| |||| ||||| ||| || ||||| || || Sbjct 16430 AACGTTGTCGATAGTGTCCGAAGACTCCACCTCGAGGGTGATGGTCTTTCCGGTAAGGGT 16371 Query 133643 TTTTACGA 133650 || |||| Sbjct 16370 CTTGACGA 16363 Score = 98.7 bits (108), Expect = 1e-15 Identities = 142/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 || ||||| ||||| || ||||| |||| | ||| ||| | ||||| | |||||| || Sbjct 17005 GTCGACTCCTTCTGGATGTTGTAGTCGCTTAGAGTGCGACCA-TCCTCCAACTGCTTACC 16947 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| | || || || || ||||| || || |||||||||||||| |||||| ||| Sbjct 16946 AGCGAAGATAAGTCGTTGTTGGTCAGGGGGAATGCCTTCCTTGTCCTGGATCTTGCTCTT 16887 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | |||| |||||| | | || || || | |||| || || || |||| || Sbjct 16886 GACGTTGTCAATCGTGTCCGATGATTCAACCTCCAGAGTGATCGTCTTTCCTGTCAAGGT 16827 Query 133643 TTTTACGAAAATCTGCAT 133660 || ||||| |||||||| Sbjct 16826 CTTGACGAAGATCTGCAT 16809 >seq315 Length=5603 Score = 118 bits (130), Expect = 1e-21 Identities = 142/191 (74%), Gaps = 4/191 (2%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGT--GGACGAGTCCTCGAGCTGCTTG 133520 ||| ||||| ||||| || ||||| ||| | || || || |||||||||||||| Sbjct 1104 GGTAGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTTCGGCCG--TCCTCGAGCTGCTTT 1161 Query 133521 CCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGC 133580 || ||| | || || ||||| |||||||| ||||| || |||||||| |||||| | Sbjct 1162 CCGGCGAAGATCAGGCGCTGTTGGTCGGGGGGGATACCCTCCTTGTCCTGGATCTTGGAC 1221 Query 133581 TTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGA 133640 |||| | || | ||||||| | |||||| |||| ||||| ||| ||||| ||||| Sbjct 1222 TTGACATTGTCGATGGTGTCGGAAGACTCCACCTCGAGGGTGATGGTCTTGCCCGTCAGG 1281 Query 133641 GTTTTTACGAA 133651 || || ||||| Sbjct 1282 GTCTTCACGAA 1292 >seq600 Length=9993 Score = 111 bits (122), Expect = 2e-19 Identities = 146/200 (73%), Gaps = 2/200 (1%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 |||| ||| ||||| || ||||| ||| | || ||| | || ||||||||||||| Sbjct 643 GGTGCTCTCCTTCTGGATGTTGTAGTCGGAGAGGGTTCGACCA-TCTTCGAGCTGCTTGC 701 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 ||||| | || | ||||| |||||||| ||||| || |||||||| ||||| || Sbjct 702 CCGCGAAGATTAATCGCTGTTGGTCGGGGGGGATTCCCTCCTTGTCCTGAATCTTCGACT 761 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 ||| | || | |||||| | | |||||| || | ||||| || || || || || | Sbjct 762 TGACATTATCGATGGTGTCGCTAGACTCCACCTCAAGGGTGATAGTCTTACCCGTGAGGG 821 Query 133642 TTTTTACGAAAATCTGCATG 133661 | || ||||||||||||||| Sbjct 822 TCTTGACGAAAATCTGCATG 841 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483409052874560