Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daldinia_20eschscholtzii_20[genbank_20GCA_5F000751375.1_202014-09- 06] 1,944 sequences; 35,539,942 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq274 111 4e-19 >seq274 Length=11782 Score = 111 bits (122), Expect = 4e-19 Identities = 229/340 (67%), Gaps = 3/340 (1%) Strand=Plus/Minus Query 110665 CGAAGGGTGCTTCAACTGGACTTGTTCCAATGTTAAGAGTCTTCAACGACACTGCAAAAT 110724 |||| ||| | || | ||| | || || ||||| |||| |||||| |||| || | || Sbjct 3322 CGAATGGTACCTCTAATGGTATCGTGCCCATGTTGCGAGTTTTCAACAACACCGCCAGAT 3263 Query 110725 ATGTGAATCAAGGTGGTAA---GAGAAATGGCTCATTTGCTATCTATCTCGAACCTTGGC 110781 | || | || |||||||| ||| || | |||||||| ||||||||||| |||| Sbjct 3262 ACGTTGACCAGGGTGGTAACAAGAGGCCCGGTGCCTTTGCTATATATCTCGAACCCTGGC 3203 Query 110782 ATTCAGATATATTTGAATTCTTAGAACTTCGTAAAAATCAAGGATTTGAAGAACAAAGAG 110841 | ||| | || || ||| | || ||||| || || || || |||||| | | Sbjct 3202 ACCAGGATGTCTTCGAGTTCCTTGACCTTCGCAAGAACCATGGTAAAGAAGAAGTCCGTG 3143 Query 110842 CACGTGATTTATTTTATGCAATGTGGATTTCAGATTTATTCATGAAACGTGTTCAAGAAA 110901 | || ||| | || || | |||||| | || | |||||||| |||||| | | | Sbjct 3142 CTCGCGATCTTTTCCTCGCTCTCTGGATTCCTGACCTTTTCATGAAGCGTGTTGAGAAGA 3083 Query 110902 ATGGCATGTGGTCTCTTATGTGTCCTCATCGTTCTCCTGGTCTATCTGATGTATATGGAA 110961 | ||| |||| | || ||||| ||| | | || ||||| | ||||| || || Sbjct 3082 ACGGCGAGTGGACCCTCATGTGCCCTAGTGAGTGCCCGGGTCTTGCCGATGTCTACGGTG 3023 Query 110962 AAGAGTTTGAAGACCTTTACGAAAAATATGAAAAAGAAGG 111001 | || ||||||| | | ||||| || ||||| |||||| Sbjct 3022 ATGAATTTGAAGCCTTGTACGAGAAGTATGAGGCAGAAGG 2983 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186783239460184