Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daldinia_20eschscholtzii_20[genbank_20GCA_5F000751375.1_202014-09- 06] 1,944 sequences; 35,539,942 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq1817 118 9e-22 seq274 104 2e-17 seq315 84.2 2e-11 >seq1817 Length=26529 Score = 118 bits (130), Expect = 9e-22 Identities = 145/198 (73%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 ||||| || || || || ||||||||||| | | || ||||||| ||||| ||||| Sbjct 16777 GTAGATTCCTTCTGGATGTTGTAGTCGCTGAGAGTTCGGCCGTCTTCCAGCTGCTTACCC 16718 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 || | || || ||||||||||| || || | |||||| || || ||||||| | ||| Sbjct 16717 GCAAAGATAAGTCGCTGTTGATCGGGGGGAATACCCTCCTTGTCCTGGATCTTGCTCTTC 16658 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | || | ||||||| | ||||| |||| || || | ||||| |||| ||| Sbjct 16657 ACATTATCGATGGTGTCTGACGACTCAACCTCTAAGGTGATGGTCTTGCCGGTCAAAGTC 16598 Query 27231 TTCACAAAGATTTGCATA 27248 ||||||||||| |||||| Sbjct 16597 TTCACAAAGATCTGCATA 16580 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098 ||||| || | ||| || || || || || ||||||||||| | |||| | || || Sbjct 17017 ACCAAGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTTAGAGTGCGACCATCCTCC 16958 Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158 | ||| ||||| ||| | || || || ||||| || || || | || || || || | Sbjct 16957 AACTGCTTACCAGCGAAGATAAGTCGTTGTTGGTCAGGGGGAATGCCTTCCTTGTCCTGG 16898 Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218 |||||| | || | | | || | ||||| | | |||||| || ||||| || | || Sbjct 16897 ATCTTGCTCTTGACGTTGTCAATCGTGTCCGATGATTCAACCTCCAGAGTGATCGTCTTT 16838 Query 27219 CCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || |||| || || || ||||| ||||| Sbjct 16837 CCTGTCAAGGTCTTGACGAAGATCTGCAT 16809 >seq274 Length=11782 Score = 104 bits (114), Expect = 2e-17 Identities = 329/501 (66%), Gaps = 17/501 (3%) Strand=Plus/Plus Query 131603 GGACATTCGCTGGGACACATTAGCGACCACACGCCGTTCTGTTCAACTCGCTTCATAAAC 131662 || || || || || ||||| || | |||| ||||||||| ||||| |||||||| || Sbjct 3046 GGGCACTCACTAGGGCACATGAGGGTCCACTCGCCGTTCTTCTCAACACGCTTCATGAAA 3105 Query 131663 AAATCCGGCACCCATAACGCGTACAACAGATCTCTAGCTTTTTTCTCTTCTGTACCCATA 131722 | || || | ||| | ||| || ||||| | ||| |||||| |||| || Sbjct 3106 AGGTCAGGAATCCAGAGAGCGAGGAAAAGATCGCGAGCACGGACTTCTTCTTTACC-ATG 3164 Query 131723 AtttttttCAAATTTAAA-AAGTCCAAAATGTCCGCATGCCAGGGTTCCAAATACACTGC 131781 || || || | || || || || | ||| ||||||||||| | ||| | || Sbjct 3165 GTTCTTGCGAAGGTCAAGGAACTCGAAGACATCCTGGTGCCAGGGTTCGAGATATATAGC 3224 Query 131782 CATTGC-----GCCT-TTGCGCTTACCGCCTTGATTAACATGACGAACCATGTTGTTGTA 131835 | || |||| ||| ||||| || || | ||| | | | |||||||| | Sbjct 3225 AAAGGCACCGGGCCTCTTG---TTACCACCCTGGTCAACGTATCTGGCGGTGTTGTTGAA 3281 Query 131836 TACGCGCAACATGGGCTCCAAACCGTTGGCGTTTCCATTGGTGCTCTTAATGTAGCTGCC 131895 || |||||||||||| | | ||| || | | | ||||| || | ||||| ||| Sbjct 3282 AACTCGCAACATGGGCACGATACCATTAGAGGTACCATTCGTACCGGCGATGTATGAGCC 3341 Query 131896 ATTGGCTCTGATTTTGTGAACGTTGAGTCCAATACCTCC-GCCGTATTTAGAGATTAGTG 131954 | | || | ||| ||| | |||||| || |||||||| || || || ||||| | | Sbjct 3342 AGTAGCACGGATCCGGTGGATGTTGAGACCGATACCTCCAGCTGT-CTTGGAGATCATGG 3400 Query 131955 CGCATTTGGTTAGAGTGTTATAGATACCTTCCACGCTGTCCGCGGCAATGTCGACTAAAA 132014 | || | | || |||| |||||||| || | ||||| | ||||| ||||| | Sbjct 3401 CACAGGTCTTGAGTGTGTCGTAGATACCCTCAATACTGTCTTCCTTCATGTCAACTAAGA 3460 Query 132015 AGCAAGAGGACAACTGTTGGTGAAATGTGCCGGC--TGAAAACAATGTGGGGCTGGCGTG 132072 |||| |||| || |||| || ||| || || |||||| | |||||| ||||| Sbjct 3461 AGCAGGAGGCCAGCTGTGCCTGGGGTGTTCCAGCATTGAAAAGA--GTGGGGGAAGCGTG 3518 Query 132073 TGTAAAAAGTTTTTTGGCCAT 132093 || ||| ||| ||| ||| Sbjct 3519 GGTGAAATATTTGCTGGACAT 3539 >seq315 Length=5603 Score = 84.2 bits (92), Expect = 2e-11 Identities = 132/189 (70%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 ||||| || || || || ||||||||| | | | || |||| |||||||| || ||| Sbjct 1105 GTAGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTTCGGCCGTCCTCGAGCTGCTTTCCG 1164 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 ||| | || || |||||||| || || || | |||||| || || ||||||| || Sbjct 1165 GCGAAGATCAGGCGCTGTTGGTCGGGGGGGATACCCTCCTTGTCCTGGATCTTGGACTTG 1224 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | || | ||||| | | || || || || || || | ||||||||||| || Sbjct 1225 ACATTGTCGATGGTGTCGGAAGACTCCACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTC 1284 Query 27231 TTCACAAAG 27239 ||||| ||| Sbjct 1285 TTCACGAAG 1293 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424924332241728