Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daldinia_20eschscholtzii_20[genbank_20GCA_5F000751375.1_202014-09- 06] 1,944 sequences; 35,539,942 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq274 141 1e-28 seq1257 104 3e-17 >seq274 Length=11782 Score = 141 bits (156), Expect = 1e-28 Identities = 308/452 (68%), Gaps = 12/452 (3%) Strand=Plus/Plus Query 111242 GATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACAT 111301 || ||||| ||||| || || |||||| | | | |||||| | ||| || || || Sbjct 2773 GACGCCAAGTTGCAGACGGCTACCTCATCGGGAGCCGAGTACTCGATAATCTCAGTGCAC 2832 Query 111302 AAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCACGCATCC 111361 ||||| ||||| ||| || || | ||||| || || ||||| |||||| |||| Sbjct 2833 AAGTTAGAACTACGAATAGTTCCAAGGTTCTTCTGATTGCTCTTGCGGTTGCAGTGATCC 2892 Query 111362 TTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCCTTCCAAACA 111421 ||||| |||||| |||| |||| ||||| ||||| | | ||||| || | ||| | Sbjct 2893 TTGTAAAGCATGAAGGGATTCCCGGTCTCGGTCTGAGCCTCCAGAATGGCGTACCATAGT 2952 Query 111422 TCGGCGGCTGGTACAAT--GGCGTTGGCCCGTCCCTCCGCCTCGTACTTTGTGTAGAGGG 111479 | ||| || | |||| | || || || ||||| ||||| ||| | || Sbjct 2953 TTCTGGGCCTTAACCTTCTGGCGAC--CACGACCTTCTGCCTCATACTTCTCGTACAAGG 3010 Query 111480 CTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCT-GGACAGAAAAGA 111538 ||||||| || ||||| | |||| ||||| || || | || || || | || Sbjct 3011 CTTCAAATTCATCACCGTAGACATCGGCAAGACCCGG-GCACTCACTAGGGCACATGAGG 3069 Query 111539 GACCATTGACCACCTTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCC--ACAGGGATG 111596 | ||| | || | |||||| ||||||||||||||||| ||||||| | || || | Sbjct 3070 GTCCACTCGCCGTTCTTCTCAACACGCTTCATGAAAAGGTCAGGAATCCAGAGAGCGAGG 3129 Query 111597 AAAAGAGATCTCTA-CACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAAC 111655 ||| ||||| | | ||| || | ||||| | ||| ||||| || | ||||||||| Sbjct 3130 AAA--AGATCGCGAGCACGGA-CTTCTTCTTTACCATGGTTCTTGCGAAGGTCAAGGAAC 3186 Query 111656 TCCATGATATCCGCGTGCCATGGCTCAAGATA 111687 || | || |||| |||||| || || ||||| Sbjct 3187 TCGAAGACATCCTGGTGCCAGGGTTCGAGATA 3218 >seq1257 Length=2089 Score = 104 bits (114), Expect = 3e-17 Identities = 142/196 (72%), Gaps = 2/196 (1%) Strand=Plus/Minus Query 122670 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACC 122729 ||| |||||||| || || || || || || || |||||| ||||| ||||| ||||| Sbjct 636 GTGCAGACCCTCGTCACGAGAGATGAGCTCGTTGGAGAAGGTAAGACCGGGCATCAGACC 577 Query 122730 CCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACA 122789 |||||||||||||| |||| | | ||||| || ||||||||||||||| ||| Sbjct 576 ACGCTTCTTCAACCAGAAAATGGAGGCGAATGCGCCACTGAAGAAGATACCCTCGACAGC 517 Query 122790 CGCAAACGCAAAAAGGCGTTCGGCGAAGGAGCGAG-ACTTTGCATCAAACCATTTCATTG 122848 ||||| |||| ||| || | || || | | ||| ||| || | ||||| || | Sbjct 516 AGCAAAGGCAATAAGACGCTGAGCAAAAGTG-GAGTTCTTGTCAGAGATCCATTGCAGAG 458 Query 122849 CCCATTTCGCCTTCTT 122864 |||| | |||||||| Sbjct 457 CCCAGTCGGCCTTCTT 442 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628016738822400