Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daldinia_20eschscholtzii_20[genbank_20GCA_5F000751375.1_202014-09- 06] 1,944 sequences; 35,539,942 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq274 192 6e-44 seq1257 84.2 2e-11 >seq274 Length=11782 Score = 192 bits (212), Expect = 6e-44 Identities = 470/707 (66%), Gaps = 24/707 (3%) Strand=Plus/Minus Query 53244 AGACGTACGACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAACG 53303 |||| ||| || | ||| | || || || || ||||| | || || || ||||| | Sbjct 3553 AGACTTACAACCTTATGTCCAGCAAATATTTCACCCACGCTTCCCCCACTCTTTTCAATG 3494 Query 53304 CTGGTACGAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGA 53363 |||| || || | ||| || | ||||||| | || | |||||||| ||| | Sbjct 3493 CTGGAACACCCCAGGCACAGCTGGCCTCCTGCTTCTTAGTTGACATGAAGGAAGACAGTA 3434 Query 53364 TCGACGGCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTA 53423 | || || |||||||| || |||||| |||||| ||||||||| | || |||| Sbjct 3433 TTGAGGGTATCTACGACACACTCAAGACCTGTGCCATGATCTCCAAGACAGCTGGAGGTA 3374 Query 53424 TCGGTATCCACTGCTCGAACG--TCCGTGCGAACGGCACACCAATCAAGGGGACGAACGG 53481 ||||| || || || | || ||||||| | ||| || ||| || ||||| || Sbjct 3373 TCGGTCTCAACA--TCCACCGGATCCGTGCTACTGGCTCATACATCGCCGGTACGAATGG 3316 Query 53482 CGTCGCCGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAA 53541 | | |||| |||||||| ||| | || || ||||||||||| ||| | ||||| | Sbjct 3315 TACCTCTAATGGTATCGTGCCCATGTTGCGAGTTTTCAACAACACCGCCAGATACGTTGA 3256 Query 53542 CCAGGGTGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGA 53601 |||||||||| ||| | || | || || || || ||||| || |||||| || Sbjct 3255 CCAGGGTGGTAACAAGAGGCCCGGTGCCTTTGCTATATATCTCGAACCCTGGCACCAGGA 3196 Query 53602 CATTATGGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGC-CGTG 53660 | | ||||| || || || || ||| || ||| | ||||| | || ||| || | Sbjct 3195 TGTCTTCGAGTTCCTTGACCTTCGCAAGAACCATGGTAAAGAAGAAGTCCG-TGCTCGCG 3137 Query 53661 ACCTGTTTACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGG 53720 | || || ||||| |||||||| ||||| |||||| | || |||||| ||| | Sbjct 3136 ATCTTTTCCTCGCTCTCTGGATTCCTGACCTTTTCATGAAGCGTGTTGAGAAGAACGGCG 3077 Query 53721 AGTGGTACCTGATGTGCCCGAACGAGTGCCCCGGCCTCCAGGGTGTCTACGGTGAGGAGT 53780 ||||| ||| |||||||| | |||||||| || || | |||||||||||| || | Sbjct 3076 AGTGGACCCTCATGTGCCCTAGTGAGTGCCCGGGTCTTGCCGATGTCTACGGTGATGAAT 3017 Query 53781 TT---------AACGAGATGTATCGGACGTACGCAGTTCAGGGCCGCTACAAGAAGAAGG 53831 || |||||| |||| || | | | || || || ||| |||||| Sbjct 3016 TTGAAGCCTTGTACGAGAAGTAT--GAGGCA-GAAGGTCGTGGTCGC------CAGAAGG 2966 Query 53832 TCAAGGCGCGTGAGGTATGGGATGCAATCCTCAAGAGCCAGGTGGAGACGGGAACGCCGT 53891 | ||||| | | ||||| | || || || || ||| ||||| || | || | Sbjct 2965 TTAAGGCCCAGAAACTATGGTACGCCATTCTGGAGGCTCAGACCGAGACCGGGAATCCCT 2906 Query 53892 ACATGTGCTACAAGGATTCGGTCAACGAGAAGAGCAACCAGAAGAAC 53938 |||| ||||||||| |||| |||||||| ||||||||| Sbjct 2905 TCATGCTTTACAAGGATCACTGCAACCGCAAGAGCAATCAGAAGAAC 2859 >seq1257 Length=2089 Score = 84.2 bits (92), Expect = 2e-11 Identities = 90/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 74790 TCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTCTTCAACCAAAAGATGGCACAG 74849 || || || || | ||| || ||||| || ||||||||||||||||| || |||| | Sbjct 608 TCGTTGGAGAAGGTAAGACCGGGCATCAGACCACGCTTCTTCAACCAGAAAATGGAGGCG 549 Query 74850 AAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAGGCGACAAGGCGTTGCGCGAA 74908 || | |||||||||||||| || |||||| |||||||| | ||| || || || || Sbjct 548 AATGCGCCACTGAAGAAGATACCCTCGACAGCAGCAAAGGCAATAAGACGCTGAGCAAA 490 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547202702651200