Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daldinia_20eschscholtzii_20[genbank_20GCA_5F000751375.1_202014-09- 06] 1,944 sequences; 35,539,942 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq600 107 1e-18 seq1817 98.7 6e-16 seq315 84.2 1e-11 >seq600 Length=9993 Score = 107 bits (118), Expect = 1e-18 Identities = 151/208 (73%), Gaps = 8/208 (4%) Strand=Plus/Plus Query 34504 TGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGT 34563 ||||| ||||||||||| || ||||| || || || || ||||| | ||||| || || Sbjct 638 TGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGAGAGGGTTCGACCATCTTCGAGCTGC 697 Query 34564 TTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTT 34623 || || || || ||||| ||||||||||| || || | |||||||||||| ||| || Sbjct 698 TTGCCCGCGAAGATTAATCGCTGTTGGTCGGGGGGGATTCCCTCCTTGTC-CTGAATCTT 756 Query 34624 TGTTTTAACGATA-AAATTGTGTCTTCGCT---CTCCACTTCCACGGTTATCGTTTTACC 34679 | || || || || ||| ||||| |||||| || | ||| || || ||||| Sbjct 757 CGACTTGACATTATCGATGGTG---TCGCTAGACTCCACCTCAAGGGTGATAGTCTTACC 813 Query 34680 GGTTAACGTTTTCACAAAAATCTGCATG 34707 || | || || || |||||||||||| Sbjct 814 CGTGAGGGTCTTGACGAAAATCTGCATG 841 >seq1817 Length=26529 Score = 98.7 bits (108), Expect = 6e-16 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | || | ||||||||| |||||| |||||||| || || || || ||||| Sbjct 16570 AGACGGAGGACAAGATGGAGAGTAGACTCCTTCTGAATGTTGTAGTCGGATAGGGTTCGG 16511 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | || ||||| || || ||||| || || || ||||||||||| || || | |||||| Sbjct 16510 CCATCCTCAAGCTGCTTGCCGGCGAAAATCAATCGCTGTTGGTCGGGAGGGATACCCTCC 16451 Query 34609 TTGTCTGTGATCTT 34622 |||||| |||||| Sbjct 16450 TTGTCTTGGATCTT 16437 Score = 87.8 bits (96), Expect = 1e-12 Identities = 144/205 (70%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 34503 ATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTG 34562 |||||| || ||||| || ||||| || || || ||||| ||||||| || || Sbjct 16784 ATGGAGGGTAGATTCCTTCTGGATGTTGTAGTCGCTGAGAGTTCGGCCGTCTTCCAGCTG 16725 Query 34563 TTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTT 34622 ||||| ||||| || | |||||||| || || || | ||||||||||| |||| | Sbjct 16724 CTTACCCGCAAAGATAAGTCGCTGTTGATCGGGGGGAATACCCTCCTTGTCCTGGATC-T 16666 Query 34623 TTGTTTTAACGATA-AAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGG 34681 | | || || || || |||||| ||| || || | ||| || || || |||| Sbjct 16665 TGCTCTTCACATTATCGATGGTGTCTGACGACTCAACCTCTAAGGTGATGGTCTTGCCGG 16606 Query 34682 TTAACGTTTTCACAAAAATCTGCAT 34706 | || || |||||||| |||||||| Sbjct 16605 TCAAAGTCTTCACAAAGATCTGCAT 16581 >seq315 Length=5603 Score = 84.2 bits (92), Expect = 1e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | ||||| ||||| || |||||| || ||||| || || || || ||||| Sbjct 1084 AGACGGAGCACCAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTTCGG 1143 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 |||| || || || || ||||| || || | ||||||||||| || || | |||||| Sbjct 1144 CCGTCCTCGAGCTGCTTTCCGGCGAAGATCAGGCGCTGTTGGTCGGGGGGGATACCCTCC 1203 Query 34609 TTGTCTGTGATCTT 34622 ||||| |||||| Sbjct 1204 TTGTCCTGGATCTT 1217 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314722143268952