Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daldinia_20eschscholtzii_20[genbank_20GCA_5F000751375.1_202014-09- 06] 1,944 sequences; 35,539,942 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq1817 107 2e-18 >seq1817 Length=26529 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || |||| || ||| | || ||||| || || ||| | || Sbjct 16809 ATGCAGATCTTCGTCAAGACCTTGACAGGAAAGACGATCACTCTGGAGGTTGAATCATCG 16868 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| ||||||| | ||||| || || || ||||| |||||||| || || || ||| Sbjct 16869 GACACGATTGACAACGTCAAGAGCAAGATCCAGGACAAGGAAGGCATTCCCCCTGACCAA 16928 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || || | || | ||| || || || ||||| || || || | ||| |||||| Sbjct 16929 CAACGACTTATCTTCGCTGGTAAGCAGTTGGAGGATGGTCGCACTCTAAGCGACTACAAC 16988 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 || || ||||||||||| | || ||||| | ||| | || ||||| Sbjct 16989 ATCCAGAAGGAGTCGACGCTGCACTTGGTGCTTCGTCTCCGTGGTGG 17035 Score = 98.7 bits (108), Expect = 9e-16 Identities = 163/232 (70%), Gaps = 4/232 (2%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || ||| ||||||||||| | || || | || || || |||| Sbjct 16581 ATGCAGATCTTTGTGAAGACTTTGACCGGCAAGACCATCACCTTAGAGGTTGAGTCGTCA 16640 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | || || || || || ||||| || || || || ||||||||| Sbjct 16641 GACACCATCGATAATGTGAAGAGCAAGATCCAGGACAAGGAGGGTATTCCCCCCGATCAA 16700 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTC--CGATTACA 27165 ||||| | || | || || || || |||||||| | ||| | | || ||| |||| Sbjct 16701 CAGCGACTTATCTTTGCGGGTAAGCAGCTGGAAGAC-GGCCGAAC-TCTCAGCGACTACA 16758 Query 27166 ACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 |||| || ||||| || ||| | ||| | ||| | || | || ||||| || Sbjct 16759 ACATCCAGAAGGAATCTACCCTCCATCTCGTTCTCCGACTACGTGGTGGAAT 16810 Score = 96.9 bits (106), Expect = 3e-15 Identities = 152/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 27000 GTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCCGACTCGATTGAG 27059 || || || || ||||| ||| | || || || || ||||| | || ||| | || || Sbjct 16365 GTCAAGACCCTTACCGGAAAGACCATCACCCTCGAGGTGGAGTCTTCGGACACTATCGAC 16424 Query 27060 ATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTAATA 27119 | || || || || |||||||| || || || || ||||| |||||||| || || Sbjct 16425 AACGTTAAGTCGAAGATCCAAGACAAGGAGGGTATCCCTCCCGACCAACAGCGATTGATT 16484 Query 27120 TACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAGGAG 27179 | ||||||||| || | || || | ||| | ||||| ||||||||||| |||||| Sbjct 16485 TTCGCCGGCAAGCAGCTTGAGGATGGCCGAACCCTATCCGACTACAACATTCAGAAGGAG 16544 Query 27180 TCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || | ||| | || | ||| | || ||||| || Sbjct 16545 TCTACTCTCCATCTTGTCCTCCGTCTCCGTGGTGGTAT 16582 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434907831482880