Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daldinia_20eschscholtzii_20[genbank_20GCA_5F000751375.1_202014-09- 06] 1,944 sequences; 35,539,942 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq1817 172 1e-37 seq600 154 3e-32 seq315 150 4e-31 >seq1817 Length=26529 Score = 172 bits (190), Expect = 1e-37 Identities = 166/213 (78%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || | ||| || || ||||| || |||||||| || || || || | ||||| Sbjct 17020 AGCACCAAGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTTAGAGTGCGACCATCC 16961 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||| |||||| || ||||||||||| |||||||||||||| |||| |||||||||||| Sbjct 16960 TCCAACTGCTTACCAGCGAAGATAAGTCGTTGTTGGTCAGGGGGAATGCCTTCCTTGTCC 16901 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || ||||| || || ||||| || ||||||||| |||||||||||| Sbjct 16900 TGGATCTTGCTCTTGACGTTGTCAATCGTGTCCGATGATTCAACCTCCAGAGTGATCGTC 16841 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115 ||||| || | ||||| || || | ||||||| Sbjct 16840 TTTCCTGTCAAGGTCTTGACGAAGATCTGCATT 16808 Score = 154 bits (170), Expect = 3e-32 Identities = 163/215 (76%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| ||||| || ||||| || || |||||||| || || || || | ||||| Sbjct 16273 AGGACGAGGTGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGCTCAGAGTGCGACCATCC 16214 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || || ||||| || ||||| || | || || ||||||||||||| |||||||| ||| Sbjct 16213 TCAAGTTGCTTTCCAGCGAAAATCAATCGCTGCTGGTCAGGAGGAATGCCTTCCTTATCC 16154 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 || ||||| ||| ||||| ||||||||||| ||| || ||||| || ||||| ||| Sbjct 16153 TGAATCTTGGATTTGACGTTGTCGATGGTGTCGGAGGACTCCACCTCAAGGGTGATGGTC 16094 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 || || ||||| ||||| || || | |||||| || Sbjct 16093 TTGCCAGTGAGGGTCTTGACGAAGATCTGCATGTT 16059 Score = 149 bits (164), Expect = 1e-30 Identities = 153/200 (77%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 |||||||| || ||||| ||||| || || ||||| || || | ||||| | ||||| Sbjct 16564 AGGACAAGATGGAGAGTAGACTCCTTCTGAATGTTGTAGTCGGATAGGGTTCGGCCATCC 16505 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || ||||||||||| ||||| || | || |||||||| ||||| | || |||||||| Sbjct 16504 TCAAGCTGCTTGCCGGCGAAAATCAATCGCTGTTGGTCGGGAGGGATACCCTCCTTGTCT 16445 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || ||||| ||||| ||||| || || |||||||| ||||| ||| Sbjct 16444 TGGATCTTCGACTTAACGTTGTCGATAGTGTCCGAAGACTCCACCTCGAGGGTGATGGTC 16385 Query 211083 TTTCCCGTGAGAGTCTTTAC 211102 ||||| || || ||||| || Sbjct 16384 TTTCCGGTAAGGGTCTTGAC 16365 Score = 149 bits (164), Expect = 1e-30 Identities = 166/222 (75%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 ||| |||| || || || || || || || || || |||||||| || || || || Sbjct 16802 ACGTAGTCGGAGAACGAGATGGAGGGTAGATTCCTTCTGGATGTTGTAGTCGCTGAGAGT 16743 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | || |||||||||||||| || || |||||||| || ||||| || || |||| || Sbjct 16742 TCGGCCGTCTTCCAGCTGCTTACCCGCAAAGATAAGTCGCTGTTGATCGGGGGGAATACC 16683 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 ||||||||||||||||| ||||| || ||||||||||| || |||||||| | Sbjct 16682 CTCCTTGTCCTGGATCTTGCTCTTCACATTATCGATGGTGTCTGACGACTCAACCTCTAA 16623 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| ||||| || || | |||||| ||||| | |||||| Sbjct 16622 GGTGATGGTCTTGCCGGTCAAAGTCTTCACAAAGATCTGCAT 16581 >seq600 Length=9993 Score = 154 bits (170), Expect = 3e-32 Identities = 164/215 (76%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || |||||||| || ||| ||| || |||||||| || || | ||||| | |||||| Sbjct 629 AGCACAAGGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGAGAGGGTTCGACCATCT 688 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || ||||||||||| |||||||| | || |||||||| || || | ||| ||||||||| Sbjct 689 TCGAGCTGCTTGCCCGCGAAGATTAATCGCTGTTGGTCGGGGGGGATTCCCTCCTTGTCC 748 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTC---AGAGCTTTCAACCTCGAGAGTGATC 211079 || ||||| || || || ||||||||||| ||| || ||||| || ||||| Sbjct 749 TGAATCTTCGACTTGACATTATCGATGGTGTCGCTAGA---CTCCACCTCAAGGGTGATA 805 Query 211080 GTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| |||||||| ||||| || || | |||||| Sbjct 806 GTCTTACCCGTGAGGGTCTTGACGAAAATCTGCAT 840 >seq315 Length=5603 Score = 150 bits (166), Expect = 4e-31 Identities = 155/203 (76%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || ||||| || || ||||| || |||||||| || || | ||||| | || || Sbjct 1090 AGCACCAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTTCGGCCGTCC 1149 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || |||||||| || |||||||| ||||| |||||||| || || | || ||||||||| Sbjct 1150 TCGAGCTGCTTTCCGGCGAAGATCAGGCGCTGTTGGTCGGGGGGGATACCCTCCTTGTCC 1209 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || || || ||||||||||| || || |||||||| ||||| ||| Sbjct 1210 TGGATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCACCTCGAGGGTGATGGTC 1269 Query 211083 TTTCCCGTGAGAGTCTTTACAAA 211105 || ||||| || ||||| || || Sbjct 1270 TTGCCCGTCAGGGTCTTCACGAA 1292 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159123128421560