Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daldinia_20eschscholtzii_20[genbank_20GCA_5F000751375.1_202014-09- 06] 1,944 sequences; 35,539,942 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq1817 176 1e-38 seq315 145 2e-29 seq600 131 4e-25 >seq1817 Length=26529 Score = 176 bits (194), Expect = 1e-38 Identities = 163/207 (79%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||| |||| || || || ||||| || ||||| || |||| ||||| ||| | ||| Sbjct 16802 ACGTAGTCGGAGAACGAGATGGAGGGTAGATTCCTTCTGGATGTTGTAGTCGCTGAGAGT 16743 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 || || ||||| |||||||| || || ||||||||||| ||||| ||||| |||||||| Sbjct 16742 TCGGCCGTCTTCCAGCTGCTTACCCGCAAAGATAAGTCGCTGTTGATCGGGGGGAATACC 16683 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 |||||||| |||||||| ||||||| |||||||||||||| | || || ||||| Sbjct 16682 CTCCTTGTCCTGGATCTTGCTCTTCACATTATCGATGGTGTCTGACGACTCAACCTCTAA 16623 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTT 225698 ||||| |||||||| |||||||| || Sbjct 16622 GGTGATGGTCTTGCCGGTCAAAGTCTT 16596 Score = 141 bits (156), Expect = 2e-28 Identities = 159/213 (75%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || | ||| || || || || || |||| ||||| ||| | ||| | ||||| Sbjct 17020 AGCACCAAGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTTAGAGTGCGACCATCC 16961 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || | |||||| |||||||||||||||||||||||||| || ||||| ||||||||||| Sbjct 16960 TCCAACTGCTTACCAGCGAAGATAAGTCGTTGTTGGTCAGGGGGAATGCCTTCCTTGTCC 16901 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| ||| || || || ||||| || | ||| || || | ||||||||| Sbjct 16900 TGGATCTTGCTCTTGACGTTGTCAATCGTGTCCGATGATTCAACCTCCAGAGTGATCGTC 16841 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714 || || ||||| || || | ||| | |||||| Sbjct 16840 TTTCCTGTCAAGGTCTTGACGAAGATCTGCATT 16808 Score = 136 bits (150), Expect = 9e-27 Identities = 159/215 (74%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||| |||||||| |||||||| || |||| ||||| ||| || ||| | ||||| Sbjct 16273 AGGACGAGGTGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGCTCAGAGTGCGACCATCC 16214 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || || ||||| |||||||| || | ||| || ||||| || ||||| |||||||| || Sbjct 16213 TCAAGTTGCTTTCCAGCGAAAATCAATCGCTGCTGGTCAGGAGGAATGCCTTCCTTATCC 16154 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 || ||||| || || ||||||||||| |||| ||||| || | ||||| ||| Sbjct 16153 TGAATCTTGGATTTGACGTTGTCGATGGTGTCGGAGGACTCCACCTCAAGGGTGATGGTC 16094 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 ||||| || | || || | ||| | ||||| || Sbjct 16093 TTGCCAGTGAGGGTCTTGACGAAGATCTGCATGTT 16059 Score = 132 bits (146), Expect = 1e-25 Identities = 142/188 (76%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 |||||||| |||||||| || || || || | ||||| |||| | |||| ||||| Sbjct 16564 AGGACAAGATGGAGAGTAGACTCCTTCTGAATGTTGTAGTCGGATAGGGTTCGGCCATCC 16505 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| || ||||| || | ||| ||||||||||| || ||||| ||||||||| Sbjct 16504 TCAAGCTGCTTGCCGGCGAAAATCAATCGCTGTTGGTCGGGAGGGATACCCTCCTTGTCT 16445 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| ||| || ||||| ||||| || | ||||| || | ||||| ||| Sbjct 16444 TGGATCTTCGACTTAACGTTGTCGATAGTGTCCGAAGACTCCACCTCGAGGGTGATGGTC 16385 Query 225682 TTGCCCGT 225689 || || || Sbjct 16384 TTTCCGGT 16377 >seq315 Length=5603 Score = 145 bits (160), Expect = 2e-29 Identities = 154/203 (76%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || |||||||| || || || || |||| ||||| |||| | |||| || || Sbjct 1090 AGCACCAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTTCGGCCGTCC 1149 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| || |||||||| || || ||||||||||| || ||||| |||||||| Sbjct 1150 TCGAGCTGCTTTCCGGCGAAGATCAGGCGCTGTTGGTCGGGGGGGATACCCTCCTTGTCC 1209 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| ||| ||| ||||||||||| || | ||||| || | ||||| ||| Sbjct 1210 TGGATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCACCTCGAGGGTGATGGTC 1269 Query 225682 TTGCCCGTCAAAGTTTTTATGAA 225704 |||||||||| || || | ||| Sbjct 1270 TTGCCCGTCAGGGTCTTCACGAA 1292 >seq600 Length=9993 Score = 131 bits (144), Expect = 4e-25 Identities = 156/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || ||||||||||| ||| || || |||| ||||| |||| | |||| |||||| Sbjct 629 AGCACAAGGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGAGAGGGTTCGACCATCT 688 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| || |||||||| | ||| ||||||||||| || || || |||||||| Sbjct 689 TCGAGCTGCTTGCCCGCGAAGATTAATCGCTGTTGGTCGGGGGGGATTCCCTCCTTGTCC 748 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 || ||||| ||| ||| ||||||||||| | ||||| || | ||||| ||| Sbjct 749 TGAATCTTCGACTTGACATTATCGATGGTGTCGCTAGACTCCACCTCAAGGGTGATAGTC 808 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || ||||| | || || | ||| | ||||| Sbjct 809 TTACCCGTGAGGGTCTTGACGAAAATCTGCAT 840 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192501497029136