Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daldinia_20eschscholtzii_20[genbank_20GCA_5F000751375.1_202014-09- 06] 1,944 sequences; 35,539,942 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq274 221 2e-52 >seq274 Length=11782 Score = 221 bits (244), Expect = 2e-52 Identities = 477/711 (67%), Gaps = 18/711 (3%) Strand=Plus/Plus Query 76519 TTCAAATTCATCTCCCCAAACATCATCCAAACCAGGACATTCATTCGGACACATCAATGA 76578 |||||||||||| || | ||||| | | ||| || || ||| | || ||||| | | Sbjct 3012 TTCAAATTCATCACCGTAGACATCGGCAAGACCCGGGCACTCACTAGGGCACATGAGGGT 3071 Query 76579 CCACTCACCATCTTCCTTAACCCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAA 76638 |||||| || | | || ||| || ||||| || || ||||| ||||| ||||| | || Sbjct 3072 CCACTCGCCGTTCTTCTCAACACGCTTCATGAAAAGGTCAGGAATCCAGAGAGCGAGGAA 3131 Query 76639 TAGATCTCGGGTTCTACGTTCTTCATTTCCTGTATTCTTTTTAAGATCTAGGAACTCCAT 76698 ||||| || | | |||||| || || ||||| ||| || |||||||| | Sbjct 3132 AAGATCGCGAGCACGGACTTCTTCTTTACCATGGTTCTTGCGAAGGTCAAGGAACTCGAA 3191 Query 76699 AATATCAGAATGCCATGGTTCTAGATATATCGCCATAACACCCGGTCGTTTATTACCTCC 76758 | ||| ||||| ||||| |||||||| || | |||| || | || ||||| || Sbjct 3192 GACATCCTGGTGCCAGGGTTCGAGATATATAGCAAAGGCACCGGGCCTCTTGTTACCACC 3251 Query 76759 CTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCCGTTAGA 76818 ||| || | |||||||| ||||| || |||||| |||||| || | || || ||||| Sbjct 3252 CTGGTCAACGTATCTGGCGGTGTTGTTGAAAACTCGCAACATGGGCACGATACCATTAGA 3311 Query 76819 TGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGAT----A 76874 |||||||| || || | || || ||| ||||| || | | ||| | Sbjct 3312 GGTACCATTCGTACCGGCGATGTATGAGCCAGTAGCACGGAT----CCGGTGGATGTTGA 3367 Query 76875 GGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGATGC 76934 | || || ||||| || | || ||||| | |||||| || | |||||| ||||| | Sbjct 3368 GACCGATACCTCCAGCTGTCTTGGAGATCATGGCACAGGTCTTGAGTGTGTCGTAGATAC 3427 Query 76935 CCTCTATACTATCATCCATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGAACAG 76994 |||| ||||| || ||| |||||| || | || ||| | || || || | Sbjct 3428 CCTCAATACTGTCTTCCTTCATGTCAACTAAGAAGCAGGAGGCCAGCTGTGCCTGGGGTG 3487 Query 76995 TTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTGT 77054 |||| ||||| || | || || || || || ||||| |||| || | || |||| Sbjct 3488 TTCCAGCATTGAAAAGAGTGGGGGAAGCGTGGGTGAAATATTTGCTGGACATAAGGTTGT 3547 Query 77055 ATGTTTCAATAACTGCTTCTATATCCCATTGATG-----AATTCCTACAGCGACACGCAT 77109 | || | ||| ||| |||| || |||| | ||| || ||||| |||||||| Sbjct 3548 AAGTCTGAATGACT--TTCTCTA---CATTATCGCCCCAAATACCAACAGCCACACGCAT 3602 Query 77110 CAACATATGCTGAGGTCGTTCTACAGTCTTATTATTTATTTTCAACAAGTATGATTTTTC 77169 | ||| ||||| || | ||||||| |||| | ||| | |||| | ||| || | || Sbjct 3603 GATCATGTGCTGTGGCCTTTCTACAATCTTCTCATTGAGCTTCAGTAGGTAAGACCTCTC 3662 Query 77170 CAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAAT 77220 ||| || || || ||||| || | ||| ||||||| ||||| | ||| Sbjct 3663 CAAGGTCTTGAAGCCAAAGTATTGGTAGTTGAAGTCTCGGTCGTAGACAAT 3713 Score = 114 bits (126), Expect = 2e-20 Identities = 348/535 (65%), Gaps = 7/535 (1%) Strand=Plus/Plus Query 75407 GTACGTAGATAGTACATACCAGTTTTTAGACCCAGACTCCATCCGTAGAAATGCATGCTT 75466 ||||| ||||||||||| |||||||| ||||| || |||| ||| |||||||||||| Sbjct 1891 GTACGGAGATAGTACATGCCAGTTTTCAGACCAAGCTTCCAGCCGGTGAAATGCATGCTG 1950 Query 75467 GTTAGTTTGGAATAACTCGGATCGGCTATATGAATATTCATCGACTGACTTTGATCGATG 75526 || | || | | || || |||||||| || | || || |||||||| Sbjct 1951 GTAATCTTCCCCATAGTGGGCTCTCTCATATGAATGTTTAGTGATTGGGATTGATCGACA 2010 Query 75527 AAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCTTTTGAGGAATTTCCCAAATAGTT 75586 || || || | ||||| ||||| | | ||||| |||| |||||||||| || Sbjct 2011 AAGGCACCACGGTCAGCGGCCATCTGGACGATGGTTCGCTGAGAGATTTCCCAAACGGTC 2070 Query 75587 TTGAAAACTTGTTTGATATCATCTGGAAGATTTGTA---TTTTGAATGGATCCGCCATCA 75643 ||| ||| ||||| || | |||| |||| | || ||||| || || || || Sbjct 2071 TTGTAAAGAGCTTTGAGGTCCGCAGGAATGTTTGGAATGTTCTGAATTGAACCACCTTCG 2130 Query 75644 GATATAATTGTATTCTTGATCTCATCATTCCACAATTTTCTCTCGGTTAAAACTCTAAGG 75703 | || || ||||| || ||| ||| | | || | | | || Sbjct 2131 GCAATGATGCGGTTCTTCATGCTGTCAGACCAGAGACCCATGTCAACAAGGTCCTTGAGC 2190 Query 75704 AGATGAGGATTAACAATTTGAAATTCTCCAGACAATACTCTTCGAGTGTAAATATTACTG 75763 | ||| ||||||| ||| || || |||| | || | |||| |||||| || Sbjct 2191 AACCAAGGGTTAACAACTTGGAACTCGCCAGCAAGGACACGACGAGAGTAAATGTTCGAT 2250 Query 75764 GTATATGGTTCCACAGATTCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATA 75823 || || || || | |||| ||||| |||| ||| || | ||| |||||| |||||| Sbjct 2251 GTGTAGGGCTCGAAGCATTCGTTGTTACCCAGAATCTGGGAAGTGCTAGCAGTGGGCATA 2310 Query 75824 GGTGCCACCAATAAACTATTTCTGAGACCATGTGTTCTGATTTTATCTTTTAGATATTTC 75883 || || || || || || |||| | ||||||| |||||| || || || | Sbjct 2311 GGAGCAACTAACAAGCTGTTTCGTACACCATGTTGCTTGATTTGCTCCTTAAGGCTAGCC 2370 Query 75884 CAATCCCAAAGATC--TGATGGTACAACATCCCAGAGATCGTATTGTAGAATTCC 75936 |||||||| ||||| || ||| |||| ||| | ||||||||||| || || Sbjct 2371 CAATCCCAGAGATCACTGGGGGTG--ACATTCCACATGTCGTATTGTAGGATACC 2423 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712917075694080