Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daldinia_20eschscholtzii_20[genbank_20GCA_5F000751375.1_202014-09- 06] 1,944 sequences; 35,539,942 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq1817 156 1e-32 seq315 145 2e-29 seq600 143 6e-29 >seq1817 Length=26529 Score = 156 bits (172), Expect = 1e-32 Identities = 158/206 (77%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || ||||| || || || |||||||| |||||||| ||| ||| Sbjct 16065 CAGATCTTCGTCAAGACCCTCACTGGCAAGACCATCACCCTTGAGGTGGAGTCCTCCGAC 16124 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| ||||||||| ||||||||||| || ||||| || ||||| |||||||| Sbjct 16125 ACCATCGACAACGTCAAATCCAAGATTCAGGATAAGGAAGGCATTCCTCCTGACCAGCAG 16184 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 ||| | || ||||| ||||| || || || ||||| | ||||| ||| || ||| || Sbjct 16185 CGATTGATTTTCGCTGGAAAGCAACTTGAGGATGGTCGCACTCTGAGCGACTACAACATC 16244 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || ||||| || || || || || Sbjct 16245 CAGAAGGAATCCACCCTCCACCTCGT 16270 Score = 141 bits (156), Expect = 2e-28 Identities = 155/205 (76%), Gaps = 1/205 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || | |||||||| |||||||| || ||||| ||| || ||| Sbjct 16812 CAGATCTTCGTCAAGACCTTGACAGGAAAGACGATCACTCTGGAGGTTGAATCATCGGAC 16871 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || |||||||| ||||| |||||||| ||||| || || || ||||| ||| Sbjct 16872 ACGATTGACAACGTCAAGAGCAAGATCCAGGACAAGGAAGGCATTCCCCCTGACCAACAA 16931 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 |||||||||||||| || || ||| | || ||||| | ||||| ||| || ||| || Sbjct 16932 CGACTTATCTTCGCTGGTAAGCAGTTGGAGGATGGTCGCACTCTAAGCGACTACAACATC 16991 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 || || || || || ||||| |||| Sbjct 16992 CAGAAGGAGTCGACGCTGCA-CTTG 17015 Score = 134 bits (148), Expect = 3e-26 Identities = 149/199 (75%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 177931 TCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCG 177990 |||| || || || || ||||| || ||||||||||||||||| || ||||| |||| Sbjct 16363 TCGTCAAGACCCTTACCGGAAAGACCATCACCCTCGAGGTGGAGTCTTCGGACACTATCG 16422 Query 177991 AGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTA 178050 | ||||| || ||||| || ||||| || || |||||||| ||||| || ||| | | Sbjct 16423 ACAACGTTAAGTCGAAGATCCAAGACAAGGAGGGTATCCCTCCCGACCAACAGCGATTGA 16482 Query 178051 TCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAG 178110 | |||||||| || ||||| || ||||| | || || |||| || ||| | || || | Sbjct 16483 TTTTCGCCGGCAAGCAGCTTGAGGATGGCCGAACCCTATCCGACTACAACATTCAGAAGG 16542 Query 178111 AATCAACACTGCATCTTGT 178129 | || || || |||||||| Sbjct 16543 AGTCTACTCTCCATCTTGT 16561 Score = 127 bits (140), Expect = 5e-24 Identities = 157/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || ||||| ||| | || || || || |||||| | ||||| || |||||| Sbjct 16584 CAGATCTTTGTGAAGACTTTGACCGGCAAGACCATCACCTTAGAGGTTGAGTCGTCAGAC 16643 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| || || || ||||| |||||||| || || || || || || || || Sbjct 16644 ACCATCGATAATGTGAAGAGCAAGATCCAGGACAAGGAGGGTATTCCCCCCGATCAACAG 16703 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 ||||||||||| || || || ||||| ||||| || | ||||| ||| || ||| || Sbjct 16704 CGACTTATCTTTGCGGGTAAGCAGCTGGAAGACGGCCGAACTCTCAGCGACTACAACATC 16763 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACT 178138 || || ||||| || || ||||| ||| | |||| Sbjct 16764 CAGAAGGAATCTACCCTCCATCTCGTTCTCCGACT 16798 >seq315 Length=5603 Score = 145 bits (160), Expect = 2e-29 Identities = 152/200 (76%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 177930 TTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATC 177989 |||||||| || || || || || || ||||||||||||||||| || ||||||||| Sbjct 1292 TTCGTGAAGACCCTGACGGGCAAGACCATCACCCTCGAGGTGGAGTCTTCCGACACCATC 1233 Query 177990 GAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTT 178049 || || ||||| ||||| |||||||| || || ||||| || ||||| || || || Sbjct 1232 GACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGTATCCCCCCCGACCAACAGCGCCTG 1173 Query 178050 ATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAA 178109 |||||||||||||| |||||||| || || | || || |||| || ||| |||| || Sbjct 1172 ATCTTCGCCGGAAAGCAGCTCGAGGACGGCCGAACCCTCTCCGACTACAACATCCAGAAG 1113 Query 178110 GAATCAACACTGCATCTTGT 178129 || || || || || || || Sbjct 1112 GAGTCTACCCTCCACCTGGT 1093 >seq600 Length=9993 Score = 143 bits (158), Expect = 6e-29 Identities = 158/209 (76%), Gaps = 6/209 (3%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA---AGCTCA 177980 || |||||||| || || ||||| || || || |||||||| |||||||| ||| Sbjct 837 CAGATTTTCGTCAAGACCCTCACGGGTAAGACTATCACCCTTGAGGTGGAGTCTAGC--- 781 Query 177981 GACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAG 178040 ||||||||||| || ||||| |||||||||||||| || |||||||| || ||||| Sbjct 780 GACACCATCGATAATGTCAAGTCGAAGATTCAGGACAAGGAGGGAATCCCCCCCGACCAA 721 Query 178041 CAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAAC 178100 || ||| | |||||||| || || |||||||||||||| | || || |||| || ||| Sbjct 720 CAGCGATTAATCTTCGCGGGCAAGCAGCTCGAAGATGGTCGAACCCTCTCCGACTACAAC 661 Query 178101 GTCCAAAAAGAATCAACACTGCATCTTGT 178129 |||| || || || || || ||||| Sbjct 660 ATCCAGAAGGAGAGCACCCTCCACCTTGT 632 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203701218065136