Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daldinia_20eschscholtzii_20[genbank_20GCA_5F000751375.1_202014-09- 06] 1,944 sequences; 35,539,942 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq600 170 2e-37 seq315 159 3e-34 seq1817 125 7e-24 seq993 95.1 1e-14 >seq600 Length=9993 Score = 170 bits (188), Expect = 2e-37 Identities = 179/231 (77%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || ||||| || | ||| || || || |||||||||||||| ||||| ||||||||| Sbjct 614 CCACCACGTAGGCGGAGCACAAGGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGAG 673 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 ||||| || | || |||||||||||||| ||||| || | ||||||||||| | ||| Sbjct 674 AGGGTTCGACCATCTTCGAGCTGCTTGCCCGCGAAGATTAATCGCTGTTGGTCGGGGGGG 733 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTG-CTT--CAACGACGACACAGTGTCGCTCGACTCC 41812 | | |||||||||| ||| | || | ||| || || | |||||||| |||||| Sbjct 734 ATTCCCTCCTTGTCC-TGAATCTTCGACTTGACATTATCG--ATGGTGTCGCTAGACTCC 790 Query 41813 ACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 ||||| | || || || |||||||| || ||||| ||||||||||||||| Sbjct 791 ACCTCAAGGGTGATAGTCTTACCCGTGAGGGTCTTGACGAAAATCTGCATG 841 >seq315 Length=5603 Score = 159 bits (176), Expect = 3e-34 Identities = 169/221 (76%), Gaps = 4/221 (2%) Strand=Plus/Plus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || || ||||| | |||||| || || || ||||||||| ||||| |||||||| Sbjct 1074 GCCACCACGGAGACGGAGCACCAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGA 1133 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 |||||| || |||| ||||||||||| |||||||| ||||||||||||||||| | ||| Sbjct 1134 GAGGGTTCGGCCGTCCTCGAGCTGCTTTCCGGCGAAGATCAGGCGCTGTTGGTCGGGGGG 1193 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTT--CAACGACGACACAGTGTCGCTCGACTCC 41812 | | |||||||||| ||| || ||| || | || | |||||| |||||| Sbjct 1194 GATACCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG--ATGGTGTCGGAAGACTCC 1251 Query 41813 ACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAA 41853 ||||| | || || || || |||||||| ||||| ||||| Sbjct 1252 ACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAA 1292 >seq1817 Length=26529 Score = 125 bits (138), Expect = 7e-24 Identities = 160/218 (73%), Gaps = 2/218 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | || ||||| || || ||||||||||||||| |||||||| Sbjct 16579 CCACCACGGAGACGGAGGACAAGATGGAGAGTAGACTCCTTCTGAATGTTGTAGTCGGAT 16520 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 ||||| || | || || ||||||||||||||||| |||| ||||||||||| | || Sbjct 16519 AGGGTTCGGCCATCCTCAAGCTGCTTGCCGGCGAAAATCAATCGCTGTTGGTCGGGAGGG 16460 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | | ||||||||| ||| || ||| |||| | | | |||||| |||||||| Sbjct 16459 ATACCCTCCTTGTCTTGGATCTTCGACTT-AACGTTGTCGATAGTGTCCGAAGACTCCAC 16401 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGA 41852 ||| | || || || || || || || ||||| |||| Sbjct 16400 CTCGAGGGTGATGGTCTTTCCGGTAAGGGTCTTGACGA 16363 Score = 122 bits (134), Expect = 8e-23 Identities = 172/239 (72%), Gaps = 2/239 (1%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || |||||||| | || || || || ||| |||||||| ||||| |||||| Sbjct 16289 GCCACCACGTAGACGAAGGACGAGGTGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGCT 16230 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 || ||||| | || || || ||||| || ||||| |||| ||||| ||||| | || Sbjct 16229 CAGAGTGCGACCATCCTCAAGTTGCTTTCCAGCGAAAATCAATCGCTGCTGGTCAGGAGG 16170 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813 || || ||||| ||| ||| | || | || ||| | | | |||||| ||||||| Sbjct 16169 AATGCCTTCCTTATCC-TGAATCTTGGATTTGACGTTGTCGATGGTGTCGGAGGACTCCA 16111 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTTATCGATG 41872 |||| | || || || || || || || ||||| ||||| ||||||||||| ||| || Sbjct 16110 CCTCAAGGGTGATGGTCTTGCCAGTGAGGGTCTTGACGAAGATCTGCATGTTGTCGGTG 16052 >seq993 Length=24289 Score = 95.1 bits (104), Expect = 1e-14 Identities = 84/105 (80%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 85803 ATCGCACCTCGTTCCGGCCTCGCCAGCAAGCACGGTATCGACGTGGGCGCCGGGGTCATC 85862 ||||| || || |||||||||||| ||||||| |||||| ||||||||| ||| || Sbjct 2 ATCGCCCCGCGCTCCGGCCTCGCCGCCAAGCACTTCATCGACACGGGCGCCGGCGTCGTC 61 Query 85863 GACGCCGACTACCGCGGAAACGTCATCATCGTACTCTTCAACCAC 85907 ||||||||||||||||| ||||| || | || ||||||||| Sbjct 62 GACGCCGACTACCGCGGCCCCGTCAAGGTCCTCCTGTTCAACCAC 106 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462292766012800