Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daldinia_20sp._20EC12_20[genbank_20GCA_5F002120325.1_202017-05-11] 398 sequences; 37,551,009 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq1 178 1e-39 seq39 132 5e-26 seq24 127 2e-24 seq16 125 7e-24 >seq1 Length=2525816 Score = 178 bits (196), Expect = 1e-39 Identities = 276/390 (71%), Gaps = 6/390 (2%) Strand=Plus/Minus Query 116982 AGAAGGCCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCC 117041 |||||||||| ||||| |||| ||||| | | || | || |||| | |||| | Sbjct 592575 AGAAGGCCGACTGGGCTCTGCAATGGATTTCTGACAAGAACTCCACCTTTGCTCAGCGTC 592516 Query 117042 TGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTT--TCGGGCAGTTTCGCCGCCATATT 117099 | | |||||||| || |||||||| ||||||| | | ||| |||||| |||| || Sbjct 592515 TCATTGCCTTCGCTGCTGTCGAGGGTATCTTCTTCAGTGGTGCA--TTCGCCTCCATCTT 592458 Query 117100 TTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAG 117159 ||| | ||||| || || || |||||||| || || ||| ||||||||||||||| | Sbjct 592457 CTGGTTGAAGAAGCGTGGTCTGATGCCCGGTCTCACCTTCTCCAACGAGCTCATCTCTCG 592398 Query 117160 GGACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTGGTGCAGCGACC 117219 || |||||||| || ||||| || || | || |||| || | | | || || Sbjct 592397 TGATGAGGGTCTACACACTGACTTCGCTTGCCTACTATTCACACACCTCAAGAACCGCCC 592338 Query 117220 GAGCGCGGCGCGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCGCTTCCT 117279 || || | || | ||||| |||| || || ||||||||||| ||| ||||| Sbjct 592337 CGGCAAGGACGTCATCCAGAAGATCATCACAGATGCTGTCGCCATCGAACAGGAATTCCT 592278 Query 117280 CACCGAAGCGCTG-CCGGTGCGTCTGCTGGGACTCAATTGCGAAACGATGTCGCAATACA 117338 ||||| || ||| || |||| ||||||||| | || | | |||| |||||||| Sbjct 592277 GACCGAGGCTCTGCCCTGTGC-TCTGCTGGGCATGAACGCCAATTTGATGAAGCAATACA 592219 Query 117339 TCGAGTTCGTCGCCGACAGGCTGCTGCTCG 117368 ||||||||||||||||| | || ||| ||| Sbjct 592218 TCGAGTTCGTCGCCGACCGCCTACTGGTCG 592189 Score = 105 bits (116), Expect = 7e-18 Identities = 197/286 (69%), Gaps = 5/286 (2%) Strand=Plus/Minus Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695 || |||| |||||||| ||| ||| || || |||||||| | || ||| | |||||| Sbjct 592982 ATCTGGCAAATGTACAAGAAGCACGAAGCATCCTTCTGGACTGCTGAAGAGATCGACCTG 592923 Query 116696 TCCAAGGACACGAGCGACTGGGAG---CGCTTGAACGACAACGAGCGCCATTTCATCAAG 116752 |||||||| ||||||| | || | || || ||||| || | Sbjct 592922 TCCAAGGATCTTCACGACTGGAACAACCGACTCAATGATGACGAGAAGTTCTTTGTTTCT 592863 Query 116753 CACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCG- 116811 ||| | || ||||| || ||||| |||||||| ||||| ||||| || || ||||| Sbjct 592862 CACATTCTTGCCTTCTTTGCCGCGTCGGACGGCATTGTCAATGAGAACCTAGTTGAGCGA 592803 Query 116812 TTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCAT 116871 ||| || | || | ||| | | |||||||| ||||||||||| || |||||| || Sbjct 592802 TTTAGCGGCGAAGTT-CAGATCCCTGAGGCGCGATGCTTCTACGGTTTCCAGATCATGAT 592744 Query 116872 GGAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTAC 116917 ||||||| | ||||| || | || || ||||| ||||| ||| Sbjct 592743 GGAGAACATCCACTCCGAGACTTACTCCCTGCTCATTGACACCTAC 592698 >seq39 Length=331608 Score = 132 bits (146), Expect = 5e-26 Identities = 159/216 (74%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || |||||||| || || |||||| | || || || | | | Sbjct 20757 ATGCAGATTTTCGTCAAGACCCTCACGGGTAAGACTATCACCCTTGAGGTGGAGTCTAGC 20816 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | ||||| || |||| ||||| ||||| |||||| | ||||| Sbjct 20817 GACACTATCGACAATGTCAAGTCCAAGATTCAGGACAAGGAGGGAATCCCCCCCGACCAA 20876 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || ||| | |||| ||| ||||| ||||| || |||| || |||||| |||||||||| Sbjct 20877 CAGCGATTAATCTTCGCCGGCAAGCAGCTCGAAGACGGCCGAACCCTCTCCGACTACAAC 20936 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGC 40905 |||||||||||| ||| || || || ||| | ||| Sbjct 20937 ATCCAGAAGGAGAGCACCCTCCACCTTGTGCTCCGC 20972 >seq24 Length=497866 Score = 127 bits (140), Expect = 2e-24 Identities = 153/207 (74%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 40694 AAATA--TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGA 40751 ||||| ||||| || || || |||||||| ||||||||| |||| || || | |||| Sbjct 474044 AAATAGCTTCGTGAAGACCCTGACGGGCAAGACCATCACCCTCGAGGTGGAGTCTTCCGA 474103 Query 40752 CAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCA 40811 || | | | | ||||| || || | ||||| ||||| |||||| | ||||| || Sbjct 474104 CACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGTATCCCCCCCGACCAACA 474163 Query 40812 ACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACAT 40871 || || |||| ||| || || ||||| || |||| || |||||| |||||||||||| Sbjct 474164 GCGCCTGATCTTCGCCGGAAAGCAGCTCGAGGACGGCCGAACCCTCTCCGACTACAACAT 474223 Query 40872 CCAGAAGGAGGCCACGCTGCATCTAGT 40898 |||||||||| | || || || || || Sbjct 474224 CCAGAAGGAGTCTACCCTCCACCTGGT 474250 >seq16 Length=747318 Score = 125 bits (138), Expect = 7e-24 Identities = 153/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || || || ||||| ||||||||| | || ||||| | | Sbjct 127902 ATGCAGATCTTTGTGAAGACTCTGACCGGCAAGACCATCACCTTAGAGGTCGAGTCGTCA 127961 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | | ||| || |||| ||||| ||||| || ||| | ||||| Sbjct 127962 GACACCATCGATAATGTGAAGAGCAAGATTCAGGACAAGGAGGGTATTCCCCCCGACCAA 128021 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || ||||| |||| ||||| || |||||||| |||| || ||||||| ||||||||| Sbjct 128022 CAGCGACTTATCTTTGCGGGTAAGCAGCTGGAAGACGGCCGAACCCTCAGCGACTACAAT 128081 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 ||||||||||| | || || ||||| || Sbjct 128082 ATCCAGAAGGAATCTACCCTTCATCTCGT 128110 Score = 122 bits (134), Expect = 9e-23 Identities = 158/217 (73%), Gaps = 1/217 (0%) Strand=Plus/Plus Query 40683 CCGAAAA-ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCG 40741 |||| || ||||| || ||||| || || ||||| ||||| ||||||||| | || || | Sbjct 127375 CCGACAACATGCAGATCTTCGTCAAGACCCTCACTGGCAAGACCATCACCCTTGAGGTGG 127434 Query 40742 AAGCCACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCG 40801 | || |||||| | | | | |||| || |||| || || || ||||| || Sbjct 127435 AGTCCTCCGACACCATCGACAATGTCAAATCGAAGATTCAGGATAAGGAAGGCATTCCTC 127494 Query 40802 CGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACG 40861 | |||||||| ||| | || | ||| || || || || || |||| ||||| || | || Sbjct 127495 CTGACCAGCAGCGATTGATTTTCGCTGGAAAGCAACTCGAGGACGGTCGCACTCTGAGCG 127554 Query 40862 ACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 |||||||||| ||||||||| |||| || ||||| || Sbjct 127555 ACTACAACATTCAGAAGGAGTCCACCCTCCATCTCGT 127591 Score = 114 bits (126), Expect = 1e-20 Identities = 150/205 (73%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 |||||| || ||||| || || | || || || || ||||| | || || ||| | | Sbjct 128129 AATGCAGATCTTCGTCAAGACCTTGACAGGAAAGACGATCACTCTGGAAGTTGAATCATC 128188 Query 40749 CGACA-GCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACC 40807 |||| | || |||| ||||| || || | ||||| || || || ||| | |||| Sbjct 128189 GGACACGATTGACAACG-TCAAGAGCAAGATCCAGGACAAGGAAGGTATTCCCCCTGACC 128247 Query 40808 AGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 40867 | |||||||| |||| ||| || || ||| |||| || | ||||| || | |||||||| Sbjct 128248 AACAACGACTTATCTTCGCTGGTAAGCAGTTGGAGGATGGCCGCACTCTAAGCGACTACA 128307 Query 40868 ACATCCAGAAGGAGGCCACGCTGCA 40892 |||||||||||||| | |||||||| Sbjct 128308 ACATCCAGAAGGAGTCGACGCTGCA 128332 Score = 95.1 bits (104), Expect = 1e-14 Identities = 146/206 (71%), Gaps = 2/206 (1%) Strand=Plus/Plus Query 40694 AAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACA 40753 ||| | |||| || || || || || || ||||||||| |||| || || | | |||| Sbjct 127678 AAACAGTCGTCAAGACCCTTACCGGAAAGACCATCACCCTCGAGGTGGAGTCTTCGGACA 127737 Query 40754 GCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAA 40812 | | |||| ||||| || || | ||||| ||||| ||||| | ||||| || Sbjct 127738 CGATCGACAACG-TCAAGTCGAAGATCCAAGACAAGGAGGGTATCCCTCCCGACCAACAG 127796 Query 40813 CGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATC 40872 ||| | || | ||| ||||| ||||| || || | || ||||| |||||||||||| Sbjct 127797 CGATTGATTTTCGCCGGCAAGCAGCTTGAGGATGGCCGAACCCTATCCGACTACAACATT 127856 Query 40873 CAGAAGGAGGCCACGCTGCATCTAGT 40898 ||||||||| | || || || || || Sbjct 127857 CAGAAGGAGTCTACTCTCCACCTTGT 127882 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515216636784480