Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daldinia_20sp._20EC12_20[genbank_20GCA_5F002120325.1_202017-05-11] 398 sequences; 37,551,009 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq10 214 2e-50 seq1 100 4e-16 >seq10 Length=1071462 Score = 214 bits (236), Expect = 2e-50 Identities = 745/1153 (65%), Gaps = 20/1153 (2%) Strand=Plus/Minus Query 62939 CAATGCAACAGATGCCAGATTACACACGGCTACCTCATTAGCATCCGCATATTGTATTAT 62998 || ||||| ||| |||| || || ||||||||||||| | | ||| || | || || Sbjct 417936 CAGTGCAAGAGACGCCAAGTTGCAGACGGCTACCTCATCGGGAGCCGAGTACTCGATAAT 417877 Query 62999 CTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTT 63058 |||||||| | || || |||||||| | || | || || ||||| ||| Sbjct 417876 TTCAGTGCACAAGTTGGAACTGCGAATAGTTCCAAGGTTCTTCTGGTTGCTCTTGCGGTT 417817 Query 63059 ACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGC 63118 ||| |||||| ||||| ||||| ||| | || || || |||| | || | ||| || Sbjct 417816 ACAGTGATCCTTGTAAAGCATGAAGGGATTTCCGGTCTCGGTCTGGGCCTCCAGAATGGC 417757 Query 63119 TTTCCAGACGACTC-GAGCCTTTA--TTATAG--ATTTGTATCTCCTTTCTCTTTCGTAT 63173 | ||| | | || | ||||| | || | | | | || || ||| | | | | Sbjct 417756 GTACCATA-GCTTCTGGGCCTTAACCTTCTGGCGACCACGACCTTCTGCCTCATACTTCT 417698 Query 63174 AGAGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCTAGGACATTCATCC 63233 | ||||| ||| || || || || | |||| | | | | || || ||| Sbjct 417697 CG----TACAAGGCTTCAAATTCATCACCGTACACATCGGCAAGACCCGGGCACTCACTA 417642 Query 63234 GGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATC 63293 || ||||| | | ||| || |||| | || || || ||||| || ||||| |||||| Sbjct 417641 GGGCACATGAGGGTCCATTCGCCGTTCTTCTCAACACGCTTCATGAAAAGATCGGGAATC 417582 Query 63294 CAAAGAGCTATAAATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGA 63353 || ||||| | || ||||| | | | || || || || ||||| |||| Sbjct 417581 CAGAGAGCAAGGAAAAGATCGCGAGCACGGACCTCTTCTTTACCGTGGTTCTTGCGAAGA 417522 Query 63354 TCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGC 63413 || |||||| | | | ||| ||||| ||||| | || || || | | || ||| Sbjct 417521 TCAAGGAACTCGAAGACATCCTGGTGCCAGGGTTCGAGATAGATAGCAAAGGCACCGGGC 417462 Query 63414 CGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGA 63473 | ||||| || ||||| || | |||||| |||||||| || |||||| |||||| || Sbjct 417461 CTCTTGTTACCACCCTGGTCAACGTATCTGGCGGTGTTGTTGAAAACTCGCAACATGGGT 417402 Query 63474 ATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAATATTA 63533 | ||||| || || ||||||| ||||||| ||| || ||| ||||||| || Sbjct 417401 ACGATACCATTAGAGGTACCATTCGTACCGGCGATGTATGAGCCAGTGGCACGGATGCGG 417342 Query 63534 CTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTG 63593 ||| ||||| || || || || | || ||||| | || || || | ||| Sbjct 417341 TGAATGTTGAGACCGATACCTCCAGCTGTCTTGGAGATCATGGCACAGGTCTTGAGTGTG 417282 Query 63594 TCATAGATGCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGG 63653 || |||||||| || || || || || |||||| | || || ||| | || || Sbjct 417281 TCGTAGATGCCCTCAATACTGTCTTCCTTCATGTCGACTAAGAAGCAGGATGCCAGCTGC 417222 Query 63654 TGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAA 63713 | | ||||| ||||| || | |||||||||||||| || || |||| || Sbjct 417221 GCCTGGGGTGTTCCAGCATTGAAAAGAGTAGGAGAAGCGTGGGTGAAATATTTGCTGGAC 417162 Query 63714 AGTAGATTGTACGTCTCAATAGCTGAGTCTA---TATC-CCATTGATGAATTCCTACTGC 63769 | || ||||| |||| ||| || |||| |||| || |||| || || || Sbjct 417161 ATAAGGTTGTAGGTCTGAATGACTTTCTCTACATTATCGCCCCAGATG----CCAACAGC 417106 Query 63770 GACACGCATTAACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTA 63829 |||||||| | ||||||||| |||||||| || || || | || | || | | || Sbjct 417105 CACACGCATGATCATGTGCTGTGGTCTTTCTACGATCTTCTCATTGAGCTTTAGTAGATA 417046 Query 63830 GGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 63889 || | ||||| || || || ||||| || | ||| |||||||| ||||| | ||| Sbjct 417045 AGACCTCTCCAAGGTCTTGAAGCCAAAGTATTGGTAGTTGAAGTCTCGGTCGTAGACAAT 416986 Query 63890 AACCGAATTGAGCTTATCCTTATATTTGTTAACTATATCCATGGTAATACTT-GAAATAA 63948 | || | | | ||||| | | | | || | || | | | ||| || || | Sbjct 416985 TGCGGAGTCAAAGTCCTCCTTGTGTCTCATGAC-ACATTCGTATGTCTCCTTGGAGATCA 416927 Query 63949 TCGGAGAATGTTTCCCATTTTTAGGATTAACATAGTTGAATAAATCCTCCATCACTTCAC 64008 | ||||| | ||| || ||||| |||||||||| | | | ||| || || | Sbjct 416926 TAGGAGAGGGCTTCATGTTCTTAGGGTTAACATAGTGGTAGAGATCGCTAATGACAGAAG 416867 Query 64009 TAAATAGtttttttGTTTCCTTGTGTAGATTTGATATGGCTATTCTGGCGGCTAGAATGG 64068 || | || || |||| |||||| || || || | ||| || | ||||| || || | Sbjct 416866 ACCATTGCTTCTTCGTTTGCTTGTGGAGGTTGGACACGGCAATACGTGCGGCAAGGATAG 416807 Query 64069 CATAATCCGGATG 64081 |||||||||| || Sbjct 416806 CATAATCCGGGTG 416794 >seq1 Length=2525816 Score = 100 bits (110), Expect = 4e-16 Identities = 148/209 (71%), Gaps = 3/209 (1%) Strand=Plus/Plus Query 33582 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGT 33641 || ||||| || ||| |||||||| || | | || | ||||| || || ||||| Sbjct 592368 CAAGCGAAGTCAGTGTGTAGACCCTCATCACGAGAGATGAGCTCGTTGGAGAAGGTGAGA 592427 Query 33642 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAG 33701 |||||||| || |||||||| || | ||| || ||||| ||||||| || |||||| Sbjct 592428 CCGGGCATCAGACCACGCTTCTTCAACCAGAAGATGGAGGCGAATGCACCACTGAAGAAG 592487 Query 33702 ATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCT---GTCATGT 33758 || || || || ||||| |||||||| || | || || | || | | |||| Sbjct 592488 ATACCCTCGACAGCAGCGAAGGCAATGAGACGCTGAGCAAAGGTGGAGTTCTTGTCAGAA 592547 Query 33759 ATCCACTTTTGAGCCCAATCGGCCTTCTT 33787 ||||| | ||||||| ||||||||||| Sbjct 592548 ATCCATTGCAGAGCCCAGTCGGCCTTCTT 592576 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629814466657440