Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daldinia_20sp._20EC12_20[genbank_20GCA_5F002120325.1_202017-05-11] 398 sequences; 37,551,009 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq10 223 5e-53 seq1 96.9 5e-15 >seq10 Length=1071462 Score = 223 bits (246), Expect = 5e-53 Identities = 746/1151 (65%), Gaps = 24/1151 (2%) Strand=Plus/Minus Query 71698 GCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCGGCATATTGTATAATTTCA 71757 |||| ||| |||| || || ||||||||||||| | | | | || | ||||||||| Sbjct 417932 GCAAGAGACGCCAAGTTGCAGACGGCTACCTCATCGGGAGCCGAGTACTCGATAATTTCA 417873 Query 71758 GTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACAC 71817 ||||| | || || || ||||| | || | || || ||||| |||||| Sbjct 417872 GTGCACAAGTTGGAACTGCGAATAGTTCCAAGGTTCTTCTGGTTGCTCTTGCGGTTACAG 417813 Query 71818 GCATCCTTATAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTC 71877 |||||| ||||| || || ||| | || || || |||| | || | ||| || | | Sbjct 417812 TGATCCTTGTAAAGCATGAAGGGATTTCCGGTCTCGGTCTGGGCCTCCAGAATGGCGTAC 417753 Query 71878 CAGACGACTCGAGCCTTTATTATATTCTTGT-ATCTCTT--TTCTCTTTCGTATTGTGTA 71934 || | | || | | ||| | |||| | | | | |||| || || | Sbjct 417752 CATA-GCTTCTGGGCCTTA--ACCTTCTGGCGACCACGACCTTCTGCCTCATACTTCTCG 417696 Query 71935 TATAATCGTTCGAACTCGTCTCCCCAAGCATTGTCTAATCCAGGACATTCATTCGGACAC 71994 || || ||| || || || || | ||| | | | || || || ||| | || ||| Sbjct 417695 TACAAGGCTTCAAATTCATCACCGTACACATCGGCAAGACCCGGGCACTCACTAGGGCAC 417636 Query 71995 ATCAATGACCACTCTCCATCATCATTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGA 72054 || | | ||| || || | | | || || ||||| || ||||| |||||||| ||| Sbjct 417635 ATGAGGGTCCATTCGCCGTTCTTCTCAACACGCTTCATGAAAAGATCGGGAATCCAGAGA 417576 Query 72055 GCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGG 72114 || | || ||||| | | | ||| || || || ||||| |||||| ||| Sbjct 417575 GCAAGGAAAAGATCGCGAGCACGGACCTCTTCTTTACCGTGGTTCTTGCGAAGATCAAGG 417516 Query 72115 AACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGCCGTTTG 72174 ||| | | | ||| ||||| ||||| | || || || | | || |||| ||| Sbjct 417515 AACTCGAAGACATCCTGGTGCCAGGGTTCGAGATAGATAGCAAAGGCACCGGGCCTCTTG 417456 Query 72175 TTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATA 72234 || || ||||| || | |||||| |||||||| || |||||| |||||| || | ||| Sbjct 417455 TTACCACCCTGGTCAACGTATCTGGCGGTGTTGTTGAAAACTCGCAACATGGGTACGATA 417396 Query 72235 CCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTGCTAATT 72294 ||||| || | |||||| || |||| ||| || ||| ||||||| || | ||| Sbjct 417395 CCATTAGAGGTACCATTCGTACCGGCGATGTATGAGCCAGTGGCACGGATGCGGTGAATG 417336 Query 72295 GATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAG 72354 ||||| || || || || | || ||||| | || || || | || || ||| Sbjct 417335 TTGAGACCGATACCTCCAGCTGTCTTGGAGATCATGGCACAGGTCTTGAGTGTGTCGTAG 417276 Query 72355 ATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGA 72414 |||||||| ||||| || ||| |||||| | || || ||| | || || || Sbjct 417275 ATGCCCTCAATACTGTCTTCCTTCATGTCGACTAAGAAGCAGGATGCCAGCTG----CGC 417220 Query 72415 CT----AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAG 72470 || ||||| ||||| || | |||||||||||||| || || |||| |||| Sbjct 417219 CTGGGGTGTTCCAGCATTGAAAAGAGTAGGAGAAGCGTGGGTGAAATATTTGCTGGACAT 417160 Query 72471 TAGATTGTACGTCTCAATAGCTGATTCTA---TATC-CCATTGATGTATTCCTACCGCGA 72526 || ||||| |||| ||| || |||| |||| || |||| || || || | Sbjct 417159 AAGGTTGTAGGTCTGAATGACTTTCTCTACATTATCGCCCCAGATG----CCAACAGCCA 417104 Query 72527 CACGCATTAACATATGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAGG 72586 ||||||| | ||| ||||| |||||||| |||||||| | ||| | || | | || | Sbjct 417103 CACGCATGATCATGTGCTGTGGTCTTTCTACGATCTTCTCATTGAGCTTTAGTAGATAAG 417044 Query 72587 ATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAA 72646 | | ||||| || || || ||||| || | ||| |||||||| ||||| | ||| Sbjct 417043 ACCTCTCCAAGGTCTTGAAGCCAAAGTATTGGTAGTTGAAGTCTCGGTCGTAGACAATTG 416984 Query 72647 CCGAATTGAGTTTATCCTTATATTTGTTAACTATATCCATGGTGATACTT-GAAATAATC 72705 | || | | | ||||| | | | | || | || | | | ||| || || || Sbjct 416983 CGGAGTCAAAGTCCTCCTTGTGTCTCATGAC-ACATTCGTATGTCTCCTTGGAGATCATA 416925 Query 72706 GGAGAATGTTTCCCATTTTTAGGATTAACATAGTTGAATAAATCCTCCATCACTTCACTA 72765 ||||| | ||| || ||||| |||||||||| | | | ||| || || | Sbjct 416924 GGAGAGGGCTTCATGTTCTTAGGGTTAACATAGTGGTAGAGATCGCTAATGACAGAAGAC 416865 Query 72766 AATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAATGGCA 72825 || | || || |||| |||||| || || || ||||| || | ||||| || || ||| Sbjct 416864 CATTGCTTCTTCGTTTGCTTGTGGAGGTTGGACACGGCAATACGTGCGGCAAGGATAGCA 416805 Query 72826 TAATCTGGATG 72836 ||||| || || Sbjct 416804 TAATCCGGGTG 416794 Score = 95.1 bits (104), Expect = 2e-14 Identities = 320/495 (65%), Gaps = 5/495 (1%) Strand=Plus/Minus Query 70831 GTACGTAGATAGTACATGCCTGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTC 70890 ||||| |||||||||||||| || || ||||| || |||| ||| |||||||| || Sbjct 418808 GTACGGAGATAGTACATGCCAGTCTTCAGACCAAGCTTCCAGCCGGTGAAATGCATGCTG 418749 Query 70891 GTTAGTTTG-GAATAGCTAGGATCGGCTATGTGAATATTCATCGACTGACTTTGATCGAT 70949 || | ||| |||| | || || |||||||| || | ||||| |||||||| Sbjct 418748 GTAATCTTGCCCATAG-TGGGCTCTCTCATGTGAATGTTTAGTGACTGGGATTGATCGAC 418690 Query 70950 GAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGT 71009 ||||| || | ||| || ||||| | | ||| || || | |||||||||| || Sbjct 418689 AAAGGCACCACGGTCAGCGGCCATCTGGACGATGGTTCGCTGAGAGATTTCCCAAACGGT 418630 Query 71010 TTTATAAACTCGCTTAATATCTTCTGGAAGGTTTG---TATTCTGAATGGATCCACCATC 71066 || |||| || | || |||| ||||| | |||||||| || ||||| || Sbjct 418629 CTTGTAAAGAGCTTTGAGGTCCGAAGGAATGTTTGGAATGTTCTGAATTGAACCACCTTC 418570 Query 71067 TGCAATAATCCTATTTTTGATCTCTTCATTCCATAATTTTCTCTCGGTTAAAACTCTAAG 71126 ||||| || | || || || ||| ||| | | || | || | || Sbjct 418569 GGCAATGATGCGGTTCTTCATGCTGTCAGACCAGAGACCCATGTCAACAAGGTCTTTGAG 418510 Query 71127 GAGATGAGGATTAACTACTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACT 71186 | ||| ||||| ||||| || || |||| | || | ||||| ||| || || Sbjct 418509 CAACCAAGGGTTAACAACTTGGAACTCGCCAGCAAGGACACGACGAGAGTAGATGTTCGA 418450 Query 71187 GGTATACGGTTCCACTGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCAT 71246 || || || || | | || || || |||| ||| || | ||| ||||| ||||| Sbjct 418449 CGTGTAGGGCTCGAAGCATTCGTTGTTACCCAGAATCTGGGAAGTGCTAGCAGTGGGCAT 418390 Query 71247 AGGTGCCACCAATAGACTATTTCTAAGACCATGTGATCGGATTTTATCTTTTAGAGATTC 71306 ||| || || || | || |||| | ||||||| ||||| || || || | Sbjct 418389 AGGAGCAACTAACAAGCTGTTTCGTACACCATGTTGCTTGATTTGCTCCTTAAGGCTAGC 418330 Query 71307 CCAATTCCAAAGATC 71321 ||||| ||| ||||| Sbjct 418329 CCAATCCCAGAGATC 418315 >seq1 Length=2525816 Score = 96.9 bits (106), Expect = 5e-15 Identities = 147/209 (70%), Gaps = 3/209 (1%) Strand=Plus/Plus Query 42065 CATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGT 42124 || ||||| || ||| ||||||||||| | | || | |||||||| || ||||| Sbjct 592368 CAAGCGAAGTCAGTGTGTAGACCCTCATCACGAGAGATGAGCTCGTTGGAGAAGGTGAGA 592427 Query 42125 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAG 42184 |||||||| || |||||||| || | ||| || || || || |||| ||| |||||| Sbjct 592428 CCGGGCATCAGACCACGCTTCTTCAACCAGAAGATGGAGGCGAATGCACCACTGAAGAAG 592487 Query 42185 ATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGG---CACTGTCATGT 42241 || || || || || || |||||||| || | || || | || ||||| Sbjct 592488 ATACCCTCGACAGCAGCGAAGGCAATGAGACGCTGAGCAAAGGTGGAGTTCTTGTCAGAA 592547 Query 42242 ATCCACTTTTGAGCCCAATCGGCCTTCTT 42270 ||||| | ||||||| ||||||||||| Sbjct 592548 ATCCATTGCAGAGCCCAGTCGGCCTTCTT 592576 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671135861082480