Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daldinia_20sp._20EC12_20[genbank_20GCA_5F002120325.1_202017-05-11] 398 sequences; 37,551,009 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq25 114 1e-19 seq2 107 1e-17 seq16 102 6e-16 seq3 91.5 1e-12 seq12 86.0 5e-11 >seq25 Length=493543 Score = 114 bits (126), Expect = 1e-19 Identities = 672/1065 (63%), Gaps = 17/1065 (2%) Strand=Plus/Plus Query 281417 TTATCAGCGGCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATT 281476 || ||| | |||| || || | ||||| |||||||| | ||| || ||||| |||||| Sbjct 274349 TTCTCAACAGCAGAGACGTTGATGATACCGTTGGCATCGACATCGAAAGTGACCTCAATT 274408 Query 281477 TGAGGGACCCCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTA 281536 |||||||| || | | ||||||||||| || || | || | || || ||| Sbjct 274409 TGAGGGACACCACGAGGCGCAGGTGGGATACCGGTCAGCTCGAACTTGCCGAGCAGGTTA 274468 Query 281537 TTATCTTTAGTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTA 281596 || || |||||| || || ||||||||| | | ||||||| || | | || || Sbjct 274469 TTGTCCTTAGTGCGTTGACGCTCACCCTCGTAGACTTGGATAAGCACACCGGGCTGGTTG 274528 Query 281597 TCTGAATAAGTTGTAAATACTCTGGATTTTTTACAAGGAATTGTTGTGTTTCTATCAATA 281656 || || | || | || || ||| || || ||||| || ||||||| || Sbjct 274529 TCCGAGAAGGTGGAGAAGACCTCGGACTTCTTGGTGGGAATAGTGGTGTTTCGGGGGATG 274588 Query 281657 ATATTGGTCATAATACCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACT 281716 | |||||||| ||||||||||| || || | ||| | || || || | ||| || | Sbjct 274589 AGCTTGGTCATCATACCACCAGCAGTCTCGATACCGATGGATAGCGGGGCGACGTCGAGA 274648 Query 281717 AGGACAATAT--TTTGAAGTTTTTCATC-AGTTTGACCAACAAGAATAGCTGCTTGAATA 281773 || | || | || | | || | | || | |||| || ||||| || || | Sbjct 274649 AGCAGGATCTCGTTGGTCGACTTGGAGCTGGTGTCACCAGAGAGGATAGCAGCCTGGACG 274708 Query 281774 GCAGCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTG 281833 || ||||| || |||||||| ||||| || || | | || || | | || || ||| Sbjct 274709 GCGGCACCGTAGGCAACAGCCTCATCGGGGTTGATGGATTTGTTGGGCTCCTTGCCGTTG 274768 Query 281834 AAAAAATTTGAAAGAAGTTGTCT-TACCTTAGGAATACGAGATGATCCTCCAACTAATAC 281892 || | | | | || | ||| || || ||||||| || || || || || || Sbjct 274769 AAGTAGTCGGTGATGAGCT-TCTGAACACGGGGGATACGAGTGGAACCACCGACCAAGAC 274827 Query 281893 AATTTCATGCACCTGTGATTTATCCAGTTTTGAATC--CAATAAAACTTTTTCAACGGGT 281950 ||| || || || || || || || | || | || ||| | || || ||||| Sbjct 274828 AATCTCGTGGACTTGAGACTTGTCAATCTTGGCGTCGGCAAGGACAC--GGTCGACGGGC 274885 Query 281951 TCAAGACCAGCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTG 282010 | | | || || | || ||||| || |||||| || | || || | Sbjct 274886 TGGATGGTGGATCGGAAGAGATCCTGGCAAAGCTCCTCGAATCGGGCACGGGT--GATGG 274943 Query 282011 ACAT-TATAA-TCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAG 282068 | | || || ||||| || || || | ||| || | ||||| | || |||| || | Sbjct 274944 AGGTGTAGAAGTCAATACCCTCAAATAGAGAGTCGATCTCAATAGAGGTCTGAGCAGAGG 275003 Query 282069 AAGATAGTGCACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGC-- 282126 | || || | || || ||||| || || || || | || | ||| | || || Sbjct 275004 AGGAAAGAGTGCGCTTGGCACGCTCGCAAGCGGTTCGGAGACGTCGCAGAGCACGGGCGT 275063 Query 282127 TGATTGATTCAAATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAG 282186 || | ||| | ||| | || | || | |||||| || | || | | || || Sbjct 275064 TGGTAGAT--AGATCCTTCTTGTGCTTGCGCTTGAACTCGTTCACGAAGTGGTTGACTAG 275121 Query 282187 ACGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAA 282246 ||| || || || |||||||| ||||| | ||| | || | |||| | || | ||| Sbjct 275122 ACGGTTGTCGAAGTCTTCACCACCCAAGTGAGTGTCACCAGCAGTAGACTTAACCTCGAA 275181 Query 282247 AAGTCCATCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAAT 282306 | || || |||| | | |||| ||||| ||| |||||||| | ||| || || Sbjct 275182 GATACCCTCCTCAATGGTTAGGAGAGACACATCGAAGGTACCACCACCAAGATCGAAGAT 275241 Query 282307 AAGTACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGT 282366 || || || || || || || |||||||| || || | ||||| || || Sbjct 275242 GAGAACGTTGCGCTCACCCTCGGCCTTCTTGTCAAGACCGTAGGCGATGGCAGCGGCTGT 275301 Query 282367 TGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGC 282426 || || || || |||| | || || || |||||||| || || || || || || Sbjct 275302 GGGCTCGTTGATGATTCGGAGGACGTTTAGGCCAGCAATGAGACCGGCGTCCTTGGTAGC 275361 Query 282427 TTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGC 282471 ||| | || || ||||| || || ||||| ||||| || || || Sbjct 275362 TTGACGCTGAGAGTCGTTGAAGTAGGCAGGTACAGTGATGACAGC 275406 >seq2 Length=1866352 Score = 107 bits (118), Expect = 1e-17 Identities = 107/139 (77%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 282335 TTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTA 282394 || ||||||||||| || || ||||||||||| |||||||| | || | | ||| ||| Sbjct 416925 TTCTCAAGACCATAAGCCAAGGCAGCAGCAGTAGGTTCATTGACAACACGGAGAACGTTA 416984 Query 282395 AGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCA 282454 ||||||||||| || || || || || ||||| | ||| || ||||| || || || Sbjct 416985 AGACCAGCAATCTGACCAGCGTCCTTGGTAGCTTGACGTTGGGAGTCGTTGAAGTAGGCG 417044 Query 282455 GGAACAGTAATAACGGCAT 282473 || ||||||| |||||||| Sbjct 417045 GGCACAGTAACAACGGCAT 417063 >seq16 Length=747318 Score = 102 bits (112), Expect = 6e-16 Identities = 207/304 (68%), Gaps = 14/304 (5%) Strand=Plus/Plus Query 282194 TCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCA 282253 || ||||| ||||| ||||| | || | || | || || || | ||| | ||| Sbjct 279449 TCGAAATCCTCACCACCCAAGTGCGTGTCACCAGCGGTGGCCAAGACCTCGAAGACACCA 279508 Query 282254 TCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAA----G 282309 ||||||| ||||| ||| | |||||| || |||||||| | |||| | | | | Sbjct 279509 TCTTCAATAGACAGAAGGGAGACATCAAAAGTACCACCACCAAGATCATAGACGATGATG 279568 Query 282310 T-ACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTG 282368 | || ||| | |||||| |||||||| || || | ||||||||| || | Sbjct 279569 TGACGCTCACCACCG-GTCTTG-------TCAAGACCGTAGGCGATAGCAGCAGCGGTAG 279620 Query 282369 GTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTT 282428 | || |||| ||||| | ||||| ||||||||||| || || || || || || | Sbjct 279621 GCTCGTTAACAATTCGAAGGACATTGAGACCAGCAATGACACCGGCGTCCTTGGTAGCCT 279680 Query 282429 GTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCTGTTA-CTTCTTTT 282487 |||| || ||||| ||||| || || ||||||| ||||||| ||| | |||||| Sbjct 279681 GTCTCTGGTTGTCGTTGAAATAGGCGGGGACAGTAACGACGGCATGTGTAACCTTCTTGC 279740 Query 282488 CCAA 282491 |||| Sbjct 279741 CCAA 279744 >seq3 Length=1726141 Score = 91.5 bits (100), Expect = 1e-12 Identities = 86/110 (78%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 432288 GGTAAAGAAGGTCGTATTAGAGGAAATTTGATGGGAAAGCGTGTCGATATGTCTGCACGT 432347 || || ||||||||| | | || || ||||||||||||||||||||| | || || ||| Sbjct 1580125 GGAAAGGAAGGTCGTTTACGTGGTAACTTGATGGGAAAGCGTGTCGATTTCTCAGCCCGT 1580184 Query 432348 ACAGTTATTACTTCTGATCCTAATATTGCTCTCAATGAAGTTGGTGTTCC 432397 || || || ||| |||| | |||||| | || ||||||| |||||||| Sbjct 1580185 ACTGTCATCACTGGTGATGCAAATATTTCACTTGATGAAGTGGGTGTTCC 1580234 Score = 87.8 bits (96), Expect = 1e-11 Identities = 87/113 (77%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 435127 CCTTTTGAATTTTTCTTCCAAGTAATGGCTGGTCGTGAAGGTATTATTAATACAGCTATT 435186 |||| || ||||||||||| | |||||||||||||||||| ||||| |||| || | Sbjct 1581562 CCTTCGGAGTTTTTCTTCCACGCCATGGCTGGTCGTGAAGGTCTTATTGATACGGCCGTC 1581621 Query 435187 AAAACTGCTGATACTGGTTATATTCAAAGAAAACTTGTCAAGATGCTTGAAGA 435239 ||||| ||||| || |||||||| || | |||||||| |||||||| Sbjct 1581622 AAAACCGCTGAAACCGGTTATATCCAGCGTCGTCTTGTCAAAGCCCTTGAAGA 1581674 >seq12 Length=989740 Score = 86.0 bits (94), Expect = 5e-11 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 131177 GTAGTAGCCACAATAGCATTTGGTATGGGTATTAATAAACCGGATGTTAGAGTTGTTATT 131236 || |||||||| ||||| ||||| ||||| || | ||||| || ||| | ||||||| Sbjct 336151 GTTGTAGCCACTATAGCGTTTGGAATGGGGATCGACAAACCCGACGTTCGTTTTGTTATC 336092 Query 131237 CATTACGGAGCTCCCAAGAATATTGAAGGTTATTATCAAGAAATTGGTAGAGCAGGTCGT 131296 ||| || ||||||| ||||||| ||||||||||| | |||| | || ||||| Sbjct 336091 CATCACTCTATCCCCAAGAGCCTTGAAGGGTATTATCAAGAGACTGGTCGTGCTGGTCGG 336032 Query 131297 GATGG 131301 ||||| Sbjct 336031 GATGG 336027 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3740610859881948