Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daldinia_20sp._20EC12_20[genbank_20GCA_5F002120325.1_202017-05-11] 398 sequences; 37,551,009 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq16 170 2e-37 seq39 140 4e-28 seq24 134 2e-26 seq12 93.3 5e-14 >seq16 Length=747318 Score = 170 bits (188), Expect = 2e-37 Identities = 176/228 (77%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| |||||||| || || |||||||| || || |||||||| ||||| Sbjct 127383 ATGCAGATCTTCGTCAAGACCCTCACTGGCAAGACCATCACCCTTGAGGTGGAGTCCTCC 127442 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | ||| | || | || |||||||| ||||| || |||||||| |||||| Sbjct 127443 GACACCATCGACAATGTCAAATCGAAGATTCAGGATAAGGAAGGCATTCCTCCTGACCAG 127502 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCT-AGCAGACTATAA 27584 ||||| | ||||| ||||| |||||||||||||| | ||| || || ||| ||||| || Sbjct 127503 CAGCGATTGATTTTCGCTGGAAAGCAACTCGAGGACGGTCGCACTCTGAGC-GACTACAA 127561 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | || ||||| ||||| || ||||| ||| | ||||| || ||||| Sbjct 127562 CATTCAGAAGGAGTCCACCCTCCATCTCGTCCTTCGTCTACGTGGTGG 127609 Score = 167 bits (184), Expect = 3e-36 Identities = 176/229 (77%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| ||||| || ||||||||||| || || | ||||| ||||| Sbjct 127902 ATGCAGATCTTTGTGAAGACTCTGACCGGCAAGACCATCACCTTAGAGGTCGAGTCGTCA 127961 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | ||| ||||| || ||||||||||||||||| ||||| || ||||| Sbjct 127962 GACACCATCGATAATGTGAAGAGCAAGATTCAGGACAAGGAGGGTATTCCCCCCGACCAA 128021 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCT-AGCAGACTATAA 27584 ||||| || || ||||| |||||||| || || || | || ||||| ||| ||||| || Sbjct 128022 CAGCGACTTATCTTTGCGGGTAAGCAGCTGGAAGACGGCCGAACCCTCAGC-GACTACAA 128080 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGA 27633 | |||| |||||||| || |||||||| || | || || || |||||| Sbjct 128081 TATCCAGAAGGAATCTACCCTTCATCTCGTTCTCCGACTACGTGGTGGA 128129 Score = 136 bits (150), Expect = 5e-27 Identities = 159/215 (74%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 27418 GTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCA 27477 |||||||| |||||||| ||||| || || || ||||| ||||| || | || | Sbjct 127686 GTCAAGACCCTTACCGGAAAGACCATCACCCTCGAGGTGGAGTCTTCGGACACGATCGAC 127745 Query 27478 AATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATT 27537 || | ||| | || || || ||||||||||| || ||||| ||||| ||||| | ||| Sbjct 127746 AACGTCAAGTCGAAGATCCAAGACAAGGAGGGTATCCCTCCCGACCAACAGCGATTGATT 127805 Query 27538 TTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAA 27597 || || || ||||| || ||||||| || |||||| | ||||| || | || ||||| Sbjct 127806 TTCGCCGGCAAGCAGCTTGAGGATGGCCGAACCCTATCCGACTACAACATTCAGAAGGAG 127865 Query 27598 TCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 || ||||| || || ||| | ||||| || ||||| Sbjct 127866 TCTACTCTCCACCTTGTCCTCCGTCTCCGTGGTGG 127900 Score = 131 bits (144), Expect = 2e-25 Identities = 168/232 (72%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| ||||| |||||||| | || || ||||| || ||||| || ||||| ||| Sbjct 128129 AATGCAGATCTTCGTCAAGACCTTGACAGGAAAGACGATCACTCTGGAAGTTGAATCATC 128188 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 || | |||| || | ||| || || ||||||||||| || ||||| || ||||| Sbjct 128189 GGACACGATTGACAACGTCAAGAGCAAGATCCAGGACAAGGAAGGTATTCCCCCTGACCA 128248 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 || || || || || ||||||||||| | ||||||| || || ||| ||||| || Sbjct 128249 ACAACGACTTATCTTCGCTGGTAAGCAGTTGGAGGATGGCCGCACTCTAAGCGACTACAA 128308 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGACAA 27636 |||| ||||| || || || || | || | ||||| || ||||||||| Sbjct 128309 CATCCAGAAGGAGTCGACGCTGCACTTGGTGCTTCGTCTCCGTGGTGGACAA 128360 >seq39 Length=331608 Score = 140 bits (154), Expect = 4e-28 Identities = 169/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 27403 ATAATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCA 27462 || ||||| || || |||||||| || || || |||||||| || |||||||| ||||| Sbjct 20754 ATCATGCAGATTTTCGTCAAGACCCTCACGGGTAAGACTATCACCCTTGAGGTGGAGTCT 20813 Query 27463 GGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGAC 27522 | || | || | ||| | ||| | || |||||||||||||||||||| || || ||| Sbjct 20814 AGCGACACTATCGACAATGTCAAGTCCAAGATTCAGGACAAGGAGGGAATCCCCCCCGAC 20873 Query 27523 CAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTAT 27582 || ||||| |||| || || || ||||| ||||| || | || ||||| | ||||| Sbjct 20874 CAACAGCGATTAATCTTCGCCGGCAAGCAGCTCGAAGACGGCCGAACCCTCTCCGACTAC 20933 Query 27583 AATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 || |||| ||||| ||| || || || || | || || || ||||| Sbjct 20934 AACATCCAGAAGGAGAGCACCCTCCACCTTGTGCTCCGCCTACGTGGTGG 20983 >seq24 Length=497866 Score = 134 bits (148), Expect = 2e-26 Identities = 161/219 (74%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 27414 CTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCAT 27473 ||| || ||||| || || |||||||| || || || ||||| ||||| || | ||| Sbjct 474050 CTTCGTGAAGACCCTGACGGGCAAGACCATCACCCTCGAGGTGGAGTCTTCCGACACCAT 474109 Query 27474 TGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCT 27533 | ||| | ||| | || || |||||||||||||| || || || ||||| ||||| || Sbjct 474110 CGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGTATCCCCCCCGACCAACAGCGCCT 474169 Query 27534 AATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAA 27593 || || || || ||||| |||||||| | || ||||| | ||||| || |||| || Sbjct 474170 GATCTTCGCCGGAAAGCAGCTCGAGGACGGCCGAACCCTCTCCGACTACAACATCCAGAA 474229 Query 27594 GGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 ||| || || || || || ||| | ||||| || ||||| Sbjct 474230 GGAGTCTACCCTCCACCTGGTCCTCCGTCTCCGTGGTGG 474268 >seq12 Length=989740 Score = 93.3 bits (102), Expect = 5e-14 Identities = 206/308 (67%), Gaps = 6/308 (2%) Strand=Plus/Minus Query 31959 CAAGCGGTCCATTCCACACGTGGCGGACGGCCTCAAGCCTTCACAGCGCAAGGTGATATA 32018 || |||||| ||||| || | |||||||| || || ||||| ||||| ||||| Sbjct 206433 CATGCGGTCTATTCCCTCGGTTGTTGACGGCCTAAAACCCGGTCAGCGAAAGGTCATATA 206374 Query 32019 CGCCTGCCTCAAGAAGAACCTGTCGAGTGACATGAAGGTGGCGCAGCTGTCGGGCTACGT 32078 ||| || || ||| |||||| | | |||| |||||| | || || | || || || Sbjct 206373 CGCTTGTCTGAAGCGAAACCTGACCAAAGACAAGAAGGTCGTTGAGTTGGCTGGTTATGT 206314 Query 32079 GGCAGAGCAAACGGCCTATCACCACGGCGAGG---CGTCGCTCCAGGGCACCATTGTCAA 32135 | ||||| ||| | || || || || || ||| || |||| || ||| || Sbjct 206313 ATCTGAGCAGACGTCATACCATCATGGTGAAATATCGTTGCACCAG---ACTATTATCGG 206257 Query 32136 CCTTGCTCAGAACTTTGTCGGTGCAAATAACCTGAACTTACTCGAGCCATCTGGACAGTT 32195 ||||||||||||||| ||||| | || || | |||| |||||||| || | || Sbjct 206256 CCTTGCTCAGAACTTCGTCGGCTCCAACAATGTCAACTGTCTCGAGCCGAGCGGTAACTT 206197 Query 32196 TGGGACCCGGCTCGCCGGTGGCAAGGATGCTGCGAGCTCCCGTTACATCTTCACCCGTCT 32255 || |||| || ||||| ||||| || ||| | ||||| ||| ||| || || Sbjct 206196 CGGTTCCCGACTTCAAGGTGGTTCAGATGCCGCTAGCCCTCGTTATATCCACACTCGCCT 206137 Query 32256 CGCACCTT 32263 | |||| Sbjct 206136 TTCTCCTT 206129 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570307562705760