Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Davidsoniella_20virescens_20[genbank_20GCA_5F001513805.1_202016-01-
13] 561 sequences; 33,427,969 total letters
Query= NC_001973.1
Length=161046
Score E
Sequences producing significant alignments: (Bits) Value
seq7 259 5e-64
seq542 131 2e-25
seq94 114 1e-20
seq548 109 6e-19
>seq7
Length=77910
Score = 259 bits (286), Expect = 5e-64
Identities = 506/738 (69%), Gaps = 15/738 (2%)
Strand=Plus/Plus
Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695
|| |||| |||||||| ||||||||||| || || ||||||| |||||| | || ||
Sbjct 72527 ATCTGGCAGATGTACAAGAAGGCCGAGGCATCTTTTTGGACCGCTGAGGAGATTGATCTA 72586
Query 116696 TCCAAGGA-CACGAGCGACTGGGAG---CGCTTGAACGACAACGAGCGCCATTTCATCAA 116751
|||||||| | | | ||||||| | || | | | | |||||| | ||||||
Sbjct 72587 TCCAAGGATCTCCA-CGACTGGAACAACCGTCTAACCAAGGACGAGCAATACTTCATCTC 72645
Query 116752 GCACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCG 116811
||| | ||||| || || || ||| || || || ||||||||||||||||| |||||
Sbjct 72646 CCACATCCTGGCTTTCTTTGCTGCCTCTGATGGTATTGTCAACGAGAATCTGGTTGAGCG 72705
Query 116812 TTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCAT 116871
|||| || ||||| ||| | ||||||| || ||||||||||| || |||||| ||
Sbjct 72706 TTTCTCTGGTGAGGTCCAGATCCCCGAGGCTCGCTGCTTCTACGGTTTCCAGATCATGAT 72765
Query 116872 GGAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTACGT----GCGCTCTT 116927
||||||| | ||||| || | || || | ||||| || ||| | | || ||
Sbjct 72766 GGAGAACATCCACTCCGAGACCTACTCCCTATTGATCGATACTTACATCAAGGAGC-CTG 72824
Query 116928 CGGAGGAGAAGCTCCGTTTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGG 116987
| | | | | | | |||| |||||||| || || || || ||| || ||||
Sbjct 72825 CTCA-GCGCACATAC--CTGTTCAACGCCATTGACACCATCCCCTGCATCCGCCGTAAGG 72881
Query 116988 CCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGG 117047
| || ||||| || ||||| || |||||| || |||||||| |||| || || |
Sbjct 72882 CTGATTGGGCCCTTAAGTGGATTTGCGACAGAGAATCCACCTTCGGCCAGCGTCTCGTTG 72941
Query 117048 CCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCA 117107
|||| || || |||||||| ||||||| || || || || | || || |||||
Sbjct 72942 CCTTTGCTGCTGTCGAGGGTATCTTCTTCTCTGGTGCCTTTGCTTCTATCTTCTGGCTAC 73001
Query 117108 AGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGG 117167
|| || || || ||||| || ||||| ||| |||||||| |||||| | || ||||
Sbjct 73002 GTAAGCGTGGTCTGATGCCTGGTCTGACCTTCTCTAACGAGCTTATCTCCCGTGATGAGG 73061
Query 117168 GTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTGGTGCAGCGACCGAGCGCGG 117227
|| |||| || ||||| || ||| ||||| ||| ||| | || || ||| ||
Sbjct 73062 GTTTGCACACAGATTTTGCTTGCTTGTTGTTCTCGCACTTGAACAACCGTCCTAGCAAGG 73121
Query 117228 CGCGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTCACCGAAG 117287
| ||| |||| |||| || || || | ||||||| || ||| | || || |
Sbjct 73122 AACTGGTCGAAAAGATTATCACTGATGCTGTTGTCATCGAGAAGGAGTTCTTAACTGAGG 73181
Query 117288 CGCTGCCGGTGC-GTCTGCTGGGACTCAATTGCGAAACGATGTCGCAATACATCGAGTTC 117346
| || || ||| ||||||| || | || ||| |||| ||| ||||| ||||||
Sbjct 73182 CTCTTCC-TTGCGGTCTGCTAGGCATGAACGCCGATCTGATGAAGCAGTACATTGAGTTC 73240
Query 117347 GTCGCCGACAGGCTGCTG 117364
|| || ||| | || |||
Sbjct 73241 GTTGCTGACCGTCTCCTG 73258
>seq542
Length=123657
Score = 131 bits (144), Expect = 2e-25
Identities = 168/229 (73%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || || || || || ||||| ||||| |||||||| | || ||||| | ||
Sbjct 107147 ATGCAGATCTTTGTCAAGACTCTCACTGGCAAGACCATCACTCTTGAGGTCGAGTCTTCC 107206
Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808
|||| | | | |||| | ||| || || | ||||| ||||| || ||| |||||||
Sbjct 107207 GACACCATTGACAACG-TGAAGTCCAAGATCCAGGACAAGGAGGGTATTCCCCCGGACCA 107265
Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868
|| || ||||||| ||| || || |||||||| |||| |||||||| |||||||||
Sbjct 107266 ACAGCGTCTCATCTTCGCTGGTAAGCAGCTGGAGGACGGTCGCACCCTATCCGACTACAA 107325
Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917
||| || |||||| | || || ||||| || |||| || | || |||
Sbjct 107326 CATTCAAAAGGAGTCGACCCTACATCTGGTTCTGCGTCTGCGTGGTGGC 107374
Score = 125 bits (138), Expect = 7e-24
Identities = 159/216 (74%), Gaps = 2/216 (1%)
Strand=Plus/Plus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || || || || || ||||| ||||| |||||||| |||| || ||| | |
Sbjct 106919 ATGCAGATCTTTGTCAAGACTCTCACTGGCAAGACCATCACTCTCGAGGTTGAATCTTCA 106978
Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808
|| | | | | |||| | ||| || |||| ||||| ||||| || || |||||||
Sbjct 106979 GATACCATTGACAACG-TGAAGTCCAAGATTCAGGACAAGGAGGGTATTCCTCCGGACCA 107037
Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868
||| || ||||| | ||| || || |||||||| |||| || || || ||||||||
Sbjct 107038 GCAGCGTCTCATTTTCGCTGGTAAGCAGCTGGAGGACGGACGTACTCTGTCTGACTACAA 107097
Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904
||||||||||||| | || |||||||| || ||||
Sbjct 107098 CATCCAGAAGGAGTCTACTCTGCATCTGGTTCTGCG 107133
Score = 113 bits (124), Expect = 5e-20
Identities = 149/204 (73%), Gaps = 2/204 (1%)
Strand=Plus/Plus
Query 40696 ATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGC 40755
||| |||| || || ||||| || || ||||||||| |||| ||||| || | || |
Sbjct 106697 ATAGTCGTTAAGACCCTCACCGGAAAGACCATCACCCTCGAAGTCGAGTCCTCTGATACT 106756
Query 40756 GTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACG 40814
| | |||| ||||| || || | || || |||||||| || |||| ||||| ||
Sbjct 106757 ATCGACAACG-TCAAGTCCAAGATCCAGGATAAGGAGGGCATTCCTCCGGATCAGCAGCG 106815
Query 40815 ACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCA 40874
|| || | ||| ||||| || || || || | |||||||| ||||||||||||||
Sbjct 106816 TCTGATTTTCGCTGGCAAGCAACTTGAAGATGGCCGCACCCTGTCTGACTACAACATCCA 106875
Query 40875 GAAGGAGGCCACGCTGCATCTAGT 40898
||||||| | || |||||||| ||
Sbjct 106876 GAAGGAGTCTACTCTGCATCTGGT 106899
Score = 111 bits (122), Expect = 2e-19
Identities = 132/179 (74%), Gaps = 0/179 (0%)
Strand=Plus/Plus
Query 40714 ACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCAAACGCTCAAGGAA 40773
|| ||||| || |||||| |||| || || | |||| | | | | | |||||
Sbjct 106425 ACCGGCAAGACTATCACCCTCGAGGTTGAGTCATCCGATACCATCGACAATGTCAAGTCC 106484
Query 40774 AAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAA 40833
|| |||| ||||| ||||||||||| ||||||||||||| || || | ||| |||||
Sbjct 106485 AAGATTCAGGACAAGGAGGGCATCCCTCCGGACCAGCAACGTCTGATTTTCGCCGGCAAG 106544
Query 40834 CAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCA 40892
|| || || |||| ||||||||| || ||||||||||| |||||| |||| || ||
Sbjct 106545 CAACTCGAGGACGGCCGCACCCTCTCTGATTACAACATCCAAAAGGAGTCCACTCTCCA 106603
>seq94
Length=134607
Score = 114 bits (126), Expect = 1e-20
Identities = 141/193 (73%), Gaps = 0/193 (0%)
Strand=Plus/Plus
Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746
|| ||||| || ||||| || || || ||||| || || || ||| |||| || || ||
Sbjct 33948 AAGATGCAGATTTTCGTCAAGACCCTGACGGGTAAGACGATTACCCTCGAGGTTGAGTCC 34007
Query 40747 ACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806
| |||| | | | | ||||| || || | || || |||||||| ||| ||||
Sbjct 34008 TCGGACACCATCGACAATGTCAAGTCTAAGATCCAGGATAAGGAGGGCATTCCCCCGGAT 34067
Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866
||||| || || |||| ||| || || |||||||| || | |||||||| |||||||
Sbjct 34068 CAGCAGCGCCTGATCTTCGCTGGTAAGCAGCTGGAGGATGGCCGCACCCTGTCCGACTAC 34127
Query 40867 AACATCCAGAAGG 40879
|||||||||||||
Sbjct 34128 AACATCCAGAAGG 34140
>seq548
Length=140442
Score = 109 bits (120), Expect = 6e-19
Identities = 135/182 (74%), Gaps = 2/182 (1%)
Strand=Plus/Minus
Query 40699 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTG 40758
||||| || || || ||||| || ||||| ||| | || ||||| || | |||| |
Sbjct 35252 TTCGTCAAGACCCTGACGGGTAAGACCATTACCCTGGAGGTCGAGTCCTCGGACACGATC 35193
Query 40759 CA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACT 40817
| |||| ||||| || |||| ||||| |||||||| ||| |||||||||| || ||
Sbjct 35192 GACAACG-TCAAGTCCAAGATTCAGGACAAGGAGGGCATTCCCCCGGACCAGCAGCGTCT 35134
Query 40818 CATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAA 40877
|||| ||| ||||| ||||| || || | || || || |||||||||||||||||
Sbjct 35133 GATCTTCGCTGGCAAGCAGCTTGAGGATGGCCGTACTCTGTCTGACTACAACATCCAGAA 35074
Query 40878 GG 40879
||
Sbjct 35073 GG 35072
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 515215587025360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |