Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Davidsoniella_20virescens_20[genbank_20GCA_5F001513805.1_202016-01- 13] 561 sequences; 33,427,969 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq7 259 5e-64 seq542 131 2e-25 seq94 114 1e-20 seq548 109 6e-19 >seq7 Length=77910 Score = 259 bits (286), Expect = 5e-64 Identities = 506/738 (69%), Gaps = 15/738 (2%) Strand=Plus/Plus Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695 || |||| |||||||| ||||||||||| || || ||||||| |||||| | || || Sbjct 72527 ATCTGGCAGATGTACAAGAAGGCCGAGGCATCTTTTTGGACCGCTGAGGAGATTGATCTA 72586 Query 116696 TCCAAGGA-CACGAGCGACTGGGAG---CGCTTGAACGACAACGAGCGCCATTTCATCAA 116751 |||||||| | | | ||||||| | || | | | | |||||| | |||||| Sbjct 72587 TCCAAGGATCTCCA-CGACTGGAACAACCGTCTAACCAAGGACGAGCAATACTTCATCTC 72645 Query 116752 GCACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCG 116811 ||| | ||||| || || || ||| || || || ||||||||||||||||| ||||| Sbjct 72646 CCACATCCTGGCTTTCTTTGCTGCCTCTGATGGTATTGTCAACGAGAATCTGGTTGAGCG 72705 Query 116812 TTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCAT 116871 |||| || ||||| ||| | ||||||| || ||||||||||| || |||||| || Sbjct 72706 TTTCTCTGGTGAGGTCCAGATCCCCGAGGCTCGCTGCTTCTACGGTTTCCAGATCATGAT 72765 Query 116872 GGAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTACGT----GCGCTCTT 116927 ||||||| | ||||| || | || || | ||||| || ||| | | || || Sbjct 72766 GGAGAACATCCACTCCGAGACCTACTCCCTATTGATCGATACTTACATCAAGGAGC-CTG 72824 Query 116928 CGGAGGAGAAGCTCCGTTTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGG 116987 | | | | | | | |||| |||||||| || || || || ||| || |||| Sbjct 72825 CTCA-GCGCACATAC--CTGTTCAACGCCATTGACACCATCCCCTGCATCCGCCGTAAGG 72881 Query 116988 CCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGG 117047 | || ||||| || ||||| || |||||| || |||||||| |||| || || | Sbjct 72882 CTGATTGGGCCCTTAAGTGGATTTGCGACAGAGAATCCACCTTCGGCCAGCGTCTCGTTG 72941 Query 117048 CCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCA 117107 |||| || || |||||||| ||||||| || || || || | || || ||||| Sbjct 72942 CCTTTGCTGCTGTCGAGGGTATCTTCTTCTCTGGTGCCTTTGCTTCTATCTTCTGGCTAC 73001 Query 117108 AGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGG 117167 || || || || ||||| || ||||| ||| |||||||| |||||| | || |||| Sbjct 73002 GTAAGCGTGGTCTGATGCCTGGTCTGACCTTCTCTAACGAGCTTATCTCCCGTGATGAGG 73061 Query 117168 GTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTGGTGCAGCGACCGAGCGCGG 117227 || |||| || ||||| || ||| ||||| ||| ||| | || || ||| || Sbjct 73062 GTTTGCACACAGATTTTGCTTGCTTGTTGTTCTCGCACTTGAACAACCGTCCTAGCAAGG 73121 Query 117228 CGCGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTCACCGAAG 117287 | ||| |||| |||| || || || | ||||||| || ||| | || || | Sbjct 73122 AACTGGTCGAAAAGATTATCACTGATGCTGTTGTCATCGAGAAGGAGTTCTTAACTGAGG 73181 Query 117288 CGCTGCCGGTGC-GTCTGCTGGGACTCAATTGCGAAACGATGTCGCAATACATCGAGTTC 117346 | || || ||| ||||||| || | || ||| |||| ||| ||||| |||||| Sbjct 73182 CTCTTCC-TTGCGGTCTGCTAGGCATGAACGCCGATCTGATGAAGCAGTACATTGAGTTC 73240 Query 117347 GTCGCCGACAGGCTGCTG 117364 || || ||| | || ||| Sbjct 73241 GTTGCTGACCGTCTCCTG 73258 >seq542 Length=123657 Score = 131 bits (144), Expect = 2e-25 Identities = 168/229 (73%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || ||||| ||||| |||||||| | || ||||| | || Sbjct 107147 ATGCAGATCTTTGTCAAGACTCTCACTGGCAAGACCATCACTCTTGAGGTCGAGTCTTCC 107206 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| | ||| || || | ||||| ||||| || ||| ||||||| Sbjct 107207 GACACCATTGACAACG-TGAAGTCCAAGATCCAGGACAAGGAGGGTATTCCCCCGGACCA 107265 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 || || ||||||| ||| || || |||||||| |||| |||||||| ||||||||| Sbjct 107266 ACAGCGTCTCATCTTCGCTGGTAAGCAGCTGGAGGACGGTCGCACCCTATCCGACTACAA 107325 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 ||| || |||||| | || || ||||| || |||| || | || ||| Sbjct 107326 CATTCAAAAGGAGTCGACCCTACATCTGGTTCTGCGTCTGCGTGGTGGC 107374 Score = 125 bits (138), Expect = 7e-24 Identities = 159/216 (74%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || ||||| ||||| |||||||| |||| || ||| | | Sbjct 106919 ATGCAGATCTTTGTCAAGACTCTCACTGGCAAGACCATCACTCTCGAGGTTGAATCTTCA 106978 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 || | | | | |||| | ||| || |||| ||||| ||||| || || ||||||| Sbjct 106979 GATACCATTGACAACG-TGAAGTCCAAGATTCAGGACAAGGAGGGTATTCCTCCGGACCA 107037 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || ||||| | ||| || || |||||||| |||| || || || |||||||| Sbjct 107038 GCAGCGTCTCATTTTCGCTGGTAAGCAGCTGGAGGACGGACGTACTCTGTCTGACTACAA 107097 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 ||||||||||||| | || |||||||| || |||| Sbjct 107098 CATCCAGAAGGAGTCTACTCTGCATCTGGTTCTGCG 107133 Score = 113 bits (124), Expect = 5e-20 Identities = 149/204 (73%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 40696 ATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGC 40755 ||| |||| || || ||||| || || ||||||||| |||| ||||| || | || | Sbjct 106697 ATAGTCGTTAAGACCCTCACCGGAAAGACCATCACCCTCGAAGTCGAGTCCTCTGATACT 106756 Query 40756 GTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACG 40814 | | |||| ||||| || || | || || |||||||| || |||| ||||| || Sbjct 106757 ATCGACAACG-TCAAGTCCAAGATCCAGGATAAGGAGGGCATTCCTCCGGATCAGCAGCG 106815 Query 40815 ACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCA 40874 || || | ||| ||||| || || || || | |||||||| |||||||||||||| Sbjct 106816 TCTGATTTTCGCTGGCAAGCAACTTGAAGATGGCCGCACCCTGTCTGACTACAACATCCA 106875 Query 40875 GAAGGAGGCCACGCTGCATCTAGT 40898 ||||||| | || |||||||| || Sbjct 106876 GAAGGAGTCTACTCTGCATCTGGT 106899 Score = 111 bits (122), Expect = 2e-19 Identities = 132/179 (74%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 40714 ACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCAAACGCTCAAGGAA 40773 || ||||| || |||||| |||| || || | |||| | | | | | ||||| Sbjct 106425 ACCGGCAAGACTATCACCCTCGAGGTTGAGTCATCCGATACCATCGACAATGTCAAGTCC 106484 Query 40774 AAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAA 40833 || |||| ||||| ||||||||||| ||||||||||||| || || | ||| ||||| Sbjct 106485 AAGATTCAGGACAAGGAGGGCATCCCTCCGGACCAGCAACGTCTGATTTTCGCCGGCAAG 106544 Query 40834 CAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCA 40892 || || || |||| ||||||||| || ||||||||||| |||||| |||| || || Sbjct 106545 CAACTCGAGGACGGCCGCACCCTCTCTGATTACAACATCCAAAAGGAGTCCACTCTCCA 106603 >seq94 Length=134607 Score = 114 bits (126), Expect = 1e-20 Identities = 141/193 (73%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 || ||||| || ||||| || || || ||||| || || || ||| |||| || || || Sbjct 33948 AAGATGCAGATTTTCGTCAAGACCCTGACGGGTAAGACGATTACCCTCGAGGTTGAGTCC 34007 Query 40747 ACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806 | |||| | | | | ||||| || || | || || |||||||| ||| |||| Sbjct 34008 TCGGACACCATCGACAATGTCAAGTCTAAGATCCAGGATAAGGAGGGCATTCCCCCGGAT 34067 Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866 ||||| || || |||| ||| || || |||||||| || | |||||||| ||||||| Sbjct 34068 CAGCAGCGCCTGATCTTCGCTGGTAAGCAGCTGGAGGATGGCCGCACCCTGTCCGACTAC 34127 Query 40867 AACATCCAGAAGG 40879 ||||||||||||| Sbjct 34128 AACATCCAGAAGG 34140 >seq548 Length=140442 Score = 109 bits (120), Expect = 6e-19 Identities = 135/182 (74%), Gaps = 2/182 (1%) Strand=Plus/Minus Query 40699 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTG 40758 ||||| || || || ||||| || ||||| ||| | || ||||| || | |||| | Sbjct 35252 TTCGTCAAGACCCTGACGGGTAAGACCATTACCCTGGAGGTCGAGTCCTCGGACACGATC 35193 Query 40759 CA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACT 40817 | |||| ||||| || |||| ||||| |||||||| ||| |||||||||| || || Sbjct 35192 GACAACG-TCAAGTCCAAGATTCAGGACAAGGAGGGCATTCCCCCGGACCAGCAGCGTCT 35134 Query 40818 CATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAA 40877 |||| ||| ||||| ||||| || || | || || || ||||||||||||||||| Sbjct 35133 GATCTTCGCTGGCAAGCAGCTTGAGGATGGCCGTACTCTGTCTGACTACAACATCCAGAA 35074 Query 40878 GG 40879 || Sbjct 35073 GG 35072 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515215587025360