Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Davidsoniella_20virescens_20[genbank_20GCA_5F001513805.1_202016-01-
13] 561 sequences; 33,427,969 total letters
Query= NC_002169.1
Length=135611
Score E
Sequences producing significant alignments: (Bits) Value
seq94 123 2e-23
seq542 113 4e-20
seq548 104 2e-17
>seq94
Length=134607
Score = 123 bits (136), Expect = 2e-23
Identities = 140/188 (74%), Gaps = 0/188 (0%)
Strand=Plus/Minus
Query 118551 TTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATG 118610
|| || |||||||| ||| || ||||| |||||| ||||| || |||||| ||||
Sbjct 34138 TTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCCTCCAGCTGCTTACCAGCGAAGATC 34079
Query 118611 AGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCG 118670
|| ||||||||||| || || ||||||||||| || || || || || | |||
Sbjct 34078 AGGCGCTGCTGATCCGGGGGAATGCCCTCCTTATCCTGGATCTTAGACTTGACATTGTCG 34019
Query 118671 ACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAA 118730
| |||||||| | ||| ||||||| ||| | ||| || || ||||| || || || |||
Sbjct 34018 ATGGTGTCCGAGGACTCAACCTCGAGGGTAATCGTCTTACCCGTCAGGGTCTTGACGAAA 33959
Query 118731 ATCTGCAT 118738
||||||||
Sbjct 33958 ATCTGCAT 33951
>seq542
Length=123657
Score = 113 bits (124), Expect = 4e-20
Identities = 143/197 (73%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601
|| ||||| |||||||||||||| ||| | ||||| ||||| ||||| || |||
Sbjct 107343 GTCGACTCCTTTTGAATGTTGTAGTCGGATAGGGTGCGACCGTCCTCCAGCTGCTTACCA 107284
Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661
||| ||||||||||||| || || || || || ||||||||||| || || ||
Sbjct 107283 GCGAAGATGAGACGCTGTTGGTCCGGGGGAATACCCTCCTTGTCCTGGATCTTGGACTTC 107224
Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721
|| | || | |||||| | ||||||||| | || | || ||||| || |||||
Sbjct 107223 ACGTTGTCAATGGTGTCGGAAGACTCGACCTCAAGAGTGATGGTCTTGCCAGTGAGAGTC 107164
Query 118722 TTTACAAAAATCTGCAT 118738
|| ||||| ||||||||
Sbjct 107163 TTGACAAAGATCTGCAT 107147
Score = 107 bits (118), Expect = 2e-18
Identities = 142/197 (72%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601
|||||||| || || |||||||| || || ||| || ||||| ||||| || |||
Sbjct 107115 GTAGACTCCTTCTGGATGTTGTAGTCAGACAGAGTACGTCCGTCCTCCAGCTGCTTACCA 107056
Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661
||| | |||||||||||||| || ||||| || ||||||||||| ||| || ||
Sbjct 107055 GCGAAAATGAGACGCTGCTGGTCCGGAGGAATACCCTCCTTGTCCTGAATCTTGGACTTC 106996
Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721
|| | || | ||| || | || ||||||| || | || ||||| || |||||
Sbjct 106995 ACGTTGTCAATGGTATCTGAAGATTCAACCTCGAGAGTGATGGTCTTGCCAGTGAGAGTC 106936
Query 118722 TTTACAAAAATCTGCAT 118738
|| ||||| ||||||||
Sbjct 106935 TTGACAAAGATCTGCAT 106919
Score = 104 bits (114), Expect = 2e-17
Identities = 134/185 (72%), Gaps = 0/185 (0%)
Strand=Plus/Minus
Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589
|||||||||| || ||||| ||||| ||||||||||| | ||||| ||||||
Sbjct 106609 ACCAAGTGGAGAGTGGACTCCTTTTGGATGTTGTAATCAGAGAGGGTGCGGCCGTCCTCG 106550
Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649
|| || || || ||| | || ||||| ||||| || ||||| |||||||||||||| |
Sbjct 106549 AGTTGCTTGCCGGCGAAAATCAGACGTTGCTGGTCCGGAGGGATGCCCTCCTTGTCCTGA 106490
Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709
|| || || || | |||| ||| || | ||| ||||||| ||| | || |||
Sbjct 106489 ATCTTGGACTTGACATTGTCGATGGTATCGGATGACTCAACCTCGAGGGTGATAGTCTTG 106430
Query 118710 CCGGT 118714
|||||
Sbjct 106429 CCGGT 106425
Score = 91.5 bits (100), Expect = 1e-13
Identities = 131/185 (71%), Gaps = 0/185 (0%)
Strand=Plus/Minus
Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601
|||||||| || || |||||||| || || ||||| ||| || || || || |||
Sbjct 106887 GTAGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCTTCAAGTTGCTTGCCA 106828
Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661
||| | || |||||||||||||| ||||| ||||||||||| || || || ||
Sbjct 106827 GCGAAAATCAGACGCTGCTGATCCGGAGGAATGCCCTCCTTATCCTGGATCTTGGACTTG 106768
Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721
|| | |||| || || | | |||||| |||| ||| | || || ||||| || ||
Sbjct 106767 ACGTTGTCGATAGTATCAGAGGACTCGACTTCGAGGGTGATGGTCTTTCCGGTGAGGGTC 106708
Query 118722 TTTAC 118726
|| ||
Sbjct 106707 TTAAC 106703
>seq548
Length=140442
Score = 104 bits (114), Expect = 2e-17
Identities = 131/180 (73%), Gaps = 0/180 (0%)
Strand=Plus/Plus
Query 118551 TTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATG 118610
|| || |||||||| || || ||| || |||||| ||||| || |||||| ||||
Sbjct 35074 TTCTGGATGTTGTAGTCAGACAGAGTACGGCCATCCTCAAGCTGCTTGCCAGCGAAGATC 35133
Query 118611 AGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCG 118670
||||||||||| || || || |||||||||||||| ||| || || || | |||
Sbjct 35134 AGACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGAATCTTGGACTTGACGTTGTCG 35193
Query 118671 ACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAA 118730
| ||||||| | ||||||||| | ||| | || || || ||||| || || || |||
Sbjct 35194 ATCGTGTCCGAGGACTCGACCTCCAGGGTAATGGTCTTACCCGTCAGGGTCTTGACGAAA 35253
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 433827433820212
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |