Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Davidsoniella_20virescens_20[genbank_20GCA_5F001513805.1_202016-01- 13] 561 sequences; 33,427,969 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq94 123 2e-23 seq542 113 4e-20 seq548 104 2e-17 >seq94 Length=134607 Score = 123 bits (136), Expect = 2e-23 Identities = 140/188 (74%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 118551 TTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATG 118610 || || |||||||| ||| || ||||| |||||| ||||| || |||||| |||| Sbjct 34138 TTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCCTCCAGCTGCTTACCAGCGAAGATC 34079 Query 118611 AGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCG 118670 || ||||||||||| || || ||||||||||| || || || || || | ||| Sbjct 34078 AGGCGCTGCTGATCCGGGGGAATGCCCTCCTTATCCTGGATCTTAGACTTGACATTGTCG 34019 Query 118671 ACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAA 118730 | |||||||| | ||| ||||||| ||| | ||| || || ||||| || || || ||| Sbjct 34018 ATGGTGTCCGAGGACTCAACCTCGAGGGTAATCGTCTTACCCGTCAGGGTCTTGACGAAA 33959 Query 118731 ATCTGCAT 118738 |||||||| Sbjct 33958 ATCTGCAT 33951 >seq542 Length=123657 Score = 113 bits (124), Expect = 4e-20 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 || ||||| |||||||||||||| ||| | ||||| ||||| ||||| || ||| Sbjct 107343 GTCGACTCCTTTTGAATGTTGTAGTCGGATAGGGTGCGACCGTCCTCCAGCTGCTTACCA 107284 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 ||| ||||||||||||| || || || || || ||||||||||| || || || Sbjct 107283 GCGAAGATGAGACGCTGTTGGTCCGGGGGAATACCCTCCTTGTCCTGGATCTTGGACTTC 107224 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721 || | || | |||||| | ||||||||| | || | || ||||| || ||||| Sbjct 107223 ACGTTGTCAATGGTGTCGGAAGACTCGACCTCAAGAGTGATGGTCTTGCCAGTGAGAGTC 107164 Query 118722 TTTACAAAAATCTGCAT 118738 || ||||| |||||||| Sbjct 107163 TTGACAAAGATCTGCAT 107147 Score = 107 bits (118), Expect = 2e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 |||||||| || || |||||||| || || ||| || ||||| ||||| || ||| Sbjct 107115 GTAGACTCCTTCTGGATGTTGTAGTCAGACAGAGTACGTCCGTCCTCCAGCTGCTTACCA 107056 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 ||| | |||||||||||||| || ||||| || ||||||||||| ||| || || Sbjct 107055 GCGAAAATGAGACGCTGCTGGTCCGGAGGAATACCCTCCTTGTCCTGAATCTTGGACTTC 106996 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721 || | || | ||| || | || ||||||| || | || ||||| || ||||| Sbjct 106995 ACGTTGTCAATGGTATCTGAAGATTCAACCTCGAGAGTGATGGTCTTGCCAGTGAGAGTC 106936 Query 118722 TTTACAAAAATCTGCAT 118738 || ||||| |||||||| Sbjct 106935 TTGACAAAGATCTGCAT 106919 Score = 104 bits (114), Expect = 2e-17 Identities = 134/185 (72%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||||||||| || ||||| ||||| ||||||||||| | ||||| |||||| Sbjct 106609 ACCAAGTGGAGAGTGGACTCCTTTTGGATGTTGTAATCAGAGAGGGTGCGGCCGTCCTCG 106550 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 || || || || ||| | || ||||| ||||| || ||||| |||||||||||||| | Sbjct 106549 AGTTGCTTGCCGGCGAAAATCAGACGTTGCTGGTCCGGAGGGATGCCCTCCTTGTCCTGA 106490 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || || || | |||| ||| || | ||| ||||||| ||| | || ||| Sbjct 106489 ATCTTGGACTTGACATTGTCGATGGTATCGGATGACTCAACCTCGAGGGTGATAGTCTTG 106430 Query 118710 CCGGT 118714 ||||| Sbjct 106429 CCGGT 106425 Score = 91.5 bits (100), Expect = 1e-13 Identities = 131/185 (71%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 |||||||| || || |||||||| || || ||||| ||| || || || || ||| Sbjct 106887 GTAGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCTTCAAGTTGCTTGCCA 106828 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 ||| | || |||||||||||||| ||||| ||||||||||| || || || || Sbjct 106827 GCGAAAATCAGACGCTGCTGATCCGGAGGAATGCCCTCCTTATCCTGGATCTTGGACTTG 106768 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721 || | |||| || || | | |||||| |||| ||| | || || ||||| || || Sbjct 106767 ACGTTGTCGATAGTATCAGAGGACTCGACTTCGAGGGTGATGGTCTTTCCGGTGAGGGTC 106708 Query 118722 TTTAC 118726 || || Sbjct 106707 TTAAC 106703 >seq548 Length=140442 Score = 104 bits (114), Expect = 2e-17 Identities = 131/180 (73%), Gaps = 0/180 (0%) Strand=Plus/Plus Query 118551 TTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATG 118610 || || |||||||| || || ||| || |||||| ||||| || |||||| |||| Sbjct 35074 TTCTGGATGTTGTAGTCAGACAGAGTACGGCCATCCTCAAGCTGCTTGCCAGCGAAGATC 35133 Query 118611 AGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCG 118670 ||||||||||| || || || |||||||||||||| ||| || || || | ||| Sbjct 35134 AGACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGAATCTTGGACTTGACGTTGTCG 35193 Query 118671 ACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAA 118730 | ||||||| | ||||||||| | ||| | || || || ||||| || || || ||| Sbjct 35194 ATCGTGTCCGAGGACTCGACCTCCAGGGTAATGGTCTTACCCGTCAGGGTCTTGACGAAA 35253 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433827433820212