Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Davidsoniella_20virescens_20[genbank_20GCA_5F001513805.1_202016-01-
13] 561 sequences; 33,427,969 total letters
Query= NC_002331.1
Length=178733
Score E
Sequences producing significant alignments: (Bits) Value
seq542 132 6e-26
seq548 95.1 1e-14
seq94 82.4 9e-11
>seq542
Length=123657
Score = 132 bits (146), Expect = 6e-26
Identities = 161/217 (74%), Gaps = 2/217 (1%)
Strand=Plus/Minus
Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027
||||| |||| ||||| || |||||| || || ||||| |||| |||||| || |
Sbjct 107134 ACGCAGAACCAGATGCAGAGTAGACTCCTTCTGGATGTTGTAGTCAGACAGAGTACGTCC 107075
Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087
||| || ||||||||||||||||| ||||| ||||||||||| | || | | ||||||
Sbjct 107074 GTCCTCCAGCTGCTTACCAGCGAAAATGAGACGCTGCTGGTCCGGAGGAATACCCTCCTT 107015
Query 43088 GTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGA 43146
|||| ||| | || | | ||| | | | || || ||||| || |||| ||||
Sbjct 107014 GTCC-TGAATCTTGGACTTCACGTTGTCAATGGTATCTGAAGATTCAACCTCGAGAGTGA 106956
Query 43147 TGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183
|||| ||||| || || ||||| |||||||| |||||
Sbjct 106955 TGGTCTTGCCAGTGAGAGTCTTGACAAAGATCTGCAT 106919
Score = 118 bits (130), Expect = 1e-21
Identities = 158/217 (73%), Gaps = 2/217 (1%)
Strand=Plus/Minus
Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027
||||| |||| ||| | || |||||||||||| ||||| || | || || || |
Sbjct 107362 ACGCAGAACCAGATGTAGGGTCGACTCCTTTTGAATGTTGTAGTCGGATAGGGTGCGACC 107303
Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087
||| || ||||||||||||||||| ||||| ||||| ||||| | || | | ||||||
Sbjct 107302 GTCCTCCAGCTGCTTACCAGCGAAGATGAGACGCTGTTGGTCCGGGGGAATACCCTCCTT 107243
Query 43088 GTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGA 43146
|||| ||| || || | ||| | | | |||||| || || || || | ||||
Sbjct 107242 GTCCTGGATCTTGGACTTCA-CGTTGTCAATGGTGTCGGAAGACTCGACCTCAAGAGTGA 107184
Query 43147 TGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183
|||| ||||| || || ||||| |||||||| |||||
Sbjct 107183 TGGTCTTGCCAGTGAGAGTCTTGACAAAGATCTGCAT 107147
>seq548
Length=140442
Score = 95.1 bits (104), Expect = 1e-14
Identities = 134/183 (73%), Gaps = 4/183 (2%)
Strand=Plus/Plus
Query 42994 CCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATA 43053
|||| || || ||||| |||| |||||| || | || || |||||||| |||||||| |
Sbjct 35072 CCTTCTGGATGTTGTAGTCAGACAGAGTACGGCCATCCTCAAGCTGCTTGCCAGCGAAGA 35131
Query 43054 TGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTC 43112
| || ||||||||||| | || | || |||||||||| ||| | || | |||| |||
Sbjct 35132 TCAGACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCC-TGAATCTTGGACTTGA-CGTT 35189
Query 43113 G-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 43171
| | | |||||| || || || || | || ||||| || ||||| || ||||| ||
Sbjct 35190 GTCGATCGTGTCCGAGGACTCGACCTCCAGGGTAATGGTCTTACCCGTCAGGGTCTTGAC 35249
Query 43172 AAA 43174
||
Sbjct 35250 GAA 35252
>seq94
Length=134607
Score = 82.4 bits (90), Expect = 9e-11
Identities = 134/193 (69%), Gaps = 0/193 (0%)
Strand=Plus/Minus
Query 42994 CCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATA 43053
|||| || || ||||| || | ||| || || | || || ||||||||||||||||| |
Sbjct 34140 CCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCCTCCAGCTGCTTACCAGCGAAGA 34081
Query 43054 TGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG 43113
| || |||||||| || | || | || |||||| ||| ||| || |||| |
Sbjct 34080 TCAGGCGCTGCTGATCCGGGGGAATGCCCTCCTTATCCTGGATCTTAGACTTGACATTGT 34021
Query 43114 CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAA 43173
| | ||||| || || || |||| || || || || ||||| || ||||| || |
Sbjct 34020 CGATGGTGTCCGAGGACTCAACCTCGAGGGTAATCGTCTTACCCGTCAGGGTCTTGACGA 33961
Query 43174 AGATTTGCATTTT 43186
| || ||||| ||
Sbjct 33960 AAATCTGCATCTT 33948
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 571813590129080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |