Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Davidsoniella_20virescens_20[genbank_20GCA_5F001513805.1_202016-01-
13] 561 sequences; 33,427,969 total letters
Query= NC_002593.1
Length=100999
Score E
Sequences producing significant alignments: (Bits) Value
seq542 143 2e-29
seq548 93.3 3e-14
seq94 84.2 1e-11
>seq542
Length=123657
Score = 143 bits (158), Expect = 2e-29
Identities = 168/227 (74%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222
|| || ||||| | ||| ||||| || | |||| || ||||| ||||||||||| |||
Sbjct 107145 CCACCACGCAGACGCAGAACCAGATGCAGAGTAGACTCCTTCTGGATGTTGTAGTCAGAC 107086
Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282
|| ||| |||| |||| |||||| || ||||||||||| ||||||||||| ||
Sbjct 107085 AGAGTACGTCCGTCCTCCAGCTGCTTACCAGCGAAAATGAGACGCTGCTGGTCCGGAGGA 107026
Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342
| | ||||||||| ||||| ||| | | | | || | ||| | ||||| ||
Sbjct 107025 ATACCCTCCTTGTCCTGAATCTTGGACTTCACGTTGTCAATGGTATCTGAAGATTCAACC 106966
Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389
|| | |||||||| ||||| |||||||| || ||||||||||||||
Sbjct 106965 TCGAGAGTGATGGTCTTGCCAGTGAGAGTCTTGACAAAGATCTGCAT 106919
Score = 125 bits (138), Expect = 5e-24
Identities = 164/227 (72%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222
|| || ||||| | ||| ||||| |||| || || || || ||||||||||||||
Sbjct 107373 CCACCACGCAGACGCAGAACCAGATGTAGGGTCGACTCCTTTTGAATGTTGTAGTCGGAT 107314
Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282
|| || |||| |||| |||||| || ||||| ||||| ||||| ||||| |||
Sbjct 107313 AGGGTGCGACCGTCCTCCAGCTGCTTACCAGCGAAGATGAGACGCTGTTGGTCCGGGGGA 107254
Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342
| | ||||||||| ||||| ||| | | | | || | |||| || |||||
Sbjct 107253 ATACCCTCCTTGTCCTGGATCTTGGACTTCACGTTGTCAATGGTGTCGGAAGACTCGACC 107194
Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389
|| | |||||||| ||||| |||||||| || ||||||||||||||
Sbjct 107193 TCAAGAGTGATGGTCTTGCCAGTGAGAGTCTTGACAAAGATCTGCAT 107147
Score = 95.1 bits (104), Expect = 8e-15
Identities = 150/215 (70%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222
|| || ||||| | || ||||| || | |||| || ||||| ||||||||||| |||
Sbjct 106917 CCACCACGCAGACGTAGAACCAGATGCAGAGTAGACTCCTTCTGGATGTTGTAGTCAGAC 106858
Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282
|| ||| | || || | |||||||| |||||||| || |||||||| || ||
Sbjct 106857 AGGGTGCGGCCATCTTCAAGTTGCTTGCCAGCGAAAATCAGACGCTGCTGATCCGGAGGA 106798
Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342
| || |||||| || ||||| ||| | | | | || | ||| | || |||||
Sbjct 106797 ATGCCCTCCTTATCCTGGATCTTGGACTTGACGTTGTCGATAGTATCAGAGGACTCGACT 106738
Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCAC 34377
|| | |||||||| || |||||||| || || ||
Sbjct 106737 TCGAGGGTGATGGTCTTTCCGGTGAGGGTCTTAAC 106703
>seq548
Length=140442
Score = 93.3 bits (102), Expect = 3e-14
Identities = 128/179 (72%), Gaps = 0/179 (0%)
Strand=Plus/Plus
Query 34202 TTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATG 34261
||||| ||||||||||| ||||| |||| | || || | ||||||||| ||||| ||
Sbjct 35074 TTCTGGATGTTGTAGTCAGACAGAGTACGGCCATCCTCAAGCTGCTTGCCAGCGAAGATC 35133
Query 34262 AGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCT 34321
|| ||||||||||| ||| | || ||||||||| ||||| ||| | | | |
Sbjct 35134 AGACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGAATCTTGGACTTGACGTTGTCG 35193
Query 34322 ATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAA 34380
|||| || | || ||||| |||| || ||||| || || || || || || || ||
Sbjct 35194 ATCGTGTCCGAGGACTCGACCTCCAGGGTAATGGTCTTACCCGTCAGGGTCTTGACGAA 35252
>seq94
Length=134607
Score = 84.2 bits (92), Expect = 1e-11
Identities = 132/189 (70%), Gaps = 0/189 (0%)
Strand=Plus/Minus
Query 34202 TTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATG 34261
||||| ||||||||||||||||| ||| | || |||| |||||| || ||||| ||
Sbjct 34138 TTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCCTCCAGCTGCTTACCAGCGAAGATC 34079
Query 34262 AGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCT 34321
|| |||||||| || ||| | || |||||| || ||||| ||| | || | |
Sbjct 34078 AGGCGCTGCTGATCCGGGGGAATGCCCTCCTTATCCTGGATCTTAGACTTGACATTGTCG 34019
Query 34322 ATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAG 34381
|| | || | || || || || | || || || || || || || || || || ||
Sbjct 34018 ATGGTGTCCGAGGACTCAACCTCGAGGGTAATCGTCTTACCCGTCAGGGTCTTGACGAAA 33959
Query 34382 ATCTGCATC 34390
|||||||||
Sbjct 33958 ATCTGCATC 33950
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 323069791096160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |