Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Davidsoniella_20virescens_20[genbank_20GCA_5F001513805.1_202016-01- 13] 561 sequences; 33,427,969 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq85 369 3e-97 seq7 167 2e-36 seq542 102 7e-17 >seq85 Length=153405 Score = 369 bits (408), Expect = 3e-97 Identities = 1228/1889 (65%), Gaps = 37/1889 (2%) Strand=Plus/Minus Query 22104 TCTTG-TCCACTGTAAACTGTATGGCGTTTGCGGCCGGTTTGGTGCGAAGATAATACATG 22162 ||||| || || || ||||| |||| ||||| | | ||| || || || ||||| Sbjct 97129 TCTTGGTCGACAGTGAACTGAATGGGAGCAGCGGCGGCCTGGGTACGTAGGTAGTACATA 97070 Query 22163 CCCGTCTTCAGACCCATCTTCCACGCGTAAAAATGTATCGACGTCAATTTTCCATAACTC 22222 || ||||| ||||| | |||||| || ||| || || || | || || | | Sbjct 97069 CCGGTCTTGAGACCGAGCTTCCAGCCGGCAAAGTGCATGCTGGTGATCTTACCCATAGTA 97010 Query 22223 GGCAAGTCCATGTACACATTGAACGACTGACTCTGATCGATAAACGCTCCTCGATCGGCG 22282 || | ||||| | || | |||||| ||| ||||| || || || |||||||| Sbjct 97009 GGGTCCTTCATGTGAATGTTCAGCGACTGCGACTGGTCGATGAAAGCGCCACGATCGGCA 96950 Query 22283 GCCATATTTATCAATGTACGCATCGACATTTCCCATACGGTCTTGTACAGTTGCCTGATC 22342 ||||| | | | |||||| || || ||||| |||||||||||||| | |||| Sbjct 96949 GCCATCTGCACAACGGTACGCTGAGAAATCTCCCAGACGGTCTTGTACAGGGCCTTGATG 96890 Query 22343 TCTAACGGTATCGATTCG--ATCCTCTGGACGGACCCGTTATTGTGTATGATCAAATTTT 22400 || || || ||| | || | ||||| || ||||||| ||||| || | Sbjct 96889 TCGGCGGGGAT--ATTAGGGATGTTTTGGACCGAACCGTTATCCGCAATGATACGGTTCT 96832 Query 22401 TAATCGTATCGTTCCACAAACCGATGGCGGTCAAATCTTTGACCAGATGACGGTTCACCA 22460 | || || ||| ||||| || | || || || | || |||| || | Sbjct 96831 TCATGGTGTCGGACCACAGGCCAAGATCGACCAGGTCACGCAGCAACCAGGGGTTAACAA 96772 Query 22461 CTTGAAACTCGCCGGACAAGACGCGGCGTTGGTAAATGTTGGATGTGAACGGTTCGAAAG 22520 | || ||||| || | || || ||||| ||||| ||||| || ||| | || ||||| Sbjct 96771 CCTGGAACTCACCAGCCAGCACACGGCGCTGGTAGATGTTCGAGGTGTAAGGCTCGAAGC 96712 Query 22521 ATTCATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCATCGGCGCCAACAGTAGCG 22580 | || ||||| || || ||||||| |||||| || || ||||| || |||| ||||||| Sbjct 96711 ACTCGTTGTTGCCTAGGATCTGAGAGGTCGAGGCAGTTGGCATAGGAGCCAGGAGTAGCG 96652 Query 22581 AGTTTCTCAAGCCGTGCT--TTGAAATTTTACTCTTGAGCATCGACCAGTCCCACAGATC 22638 |||| | || |||||||| |||| | || || ||||| | |||||||||||| || Sbjct 96651 AGTTGCGCACGCCGTGCTGCTTGATCTGTTCCT--TGAGCGAGGCCCAGTCCCACAGGTC 96594 Query 22639 GGACGGCGTCACATTGTCCCACATATCGTATTGCAACACGCCGCGACTCGCCGGGCTGCC 22698 || || || || |||||| ||| | |||| | || || | || || Sbjct 96593 ACTAGGGGTAACGTT---CCACATGTCGAACTGCAGGATACCCTGAGATACAGGCGAACC 96537 Query 22699 TTCGTACGTTTCGTACGGACCATATATCGCGGCAAGTTCGCAGCTCGCCTCCAACGCGCC 22758 || || || ||| | ||| | | |||| ||||| || || || | Sbjct 96536 CTCATAGGTGGAGTAAGTACCCTCGGTTTGAGCAATCTCGCACGAGGCAGTCAGGGCAGC 96477 Query 22759 GTAATATATAGTCTCGAAGATTTTCTTGTTCAA--TTCGG-CGGCGGC-GACGCTTTCGT 22814 || || || ||||||||||| | |||||||| | ||| | |||| ||| ||| Sbjct 96476 GTGGTAGATGGTCTCGAAGATCTGCTTGTTCAGAGTGCGGGCCTCGGCAGAC----TCGA 96421 Query 22815 ACGGCATACGCATCATCACGAACGCGTCCGCCATACCCTGAACGCCTATACCGATCGGTC 22874 | ||||| || | | ||| || || || | |||||| || || | ||| || || | Sbjct 96420 AAGGCATGCGTAGGGCTAGGAAAGCATCGGCTAGACCCTGGACACCAACACCAATGGGGC 96361 Query 22875 GGTTTTTCAGATTCGACACTTTTG--CCTCGGGCAAAGGATACCAATTCGAATCGATTGT 22932 | | || || | || || |||| |||| ||| || || |||||| | Sbjct 96360 GATGACGCATGTTG--CTGTTGTGAGCCTCAGGCACAGGGTAGTGGTTGACATCGATAAT 96303 Query 22933 TCTGTTCAAGTTTCTGGTCACAATTTTCGTTATNNNNNNNNNNNNNTCAAAGTCGTAAAC 22992 | |||| ||| | || | || || || | || ||||| | Sbjct 96302 GCGATTCAGGTTACGCACGACCACCTTGGTGATCTCGTGCAGCTTCTGGAAATCGTACTC 96243 Query 22993 GCCCGA-TTGTA--CAACAAACT-TGTTGACGGCGATCGAGGCAAGATTGCATACGGCCA 23048 || ||||| | ||||| || | | ||| | |||||| || ||||||||||| | Sbjct 96242 TCCTTTGTTGTAGTCGACAAAGGATGGT-AGGGCTAGCGAGGCTAGGTTGCATACGGCAA 96184 Query 23049 CCTCGTCTTTGGA-CGT-GTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGT 23106 |||| || ||| || |||||| | ||||| || ||||||||| | || || Sbjct 96183 CCTCATCG--GGAGCGCAGTACTCGATGATTTCAGTGCATAGATTGGAGCTGCGGATAGT 96126 Query 23107 GCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGT 23166 ||| | || |||||||||| || ||||| | |||||||| |||||| | || | Sbjct 96125 GCCTAGGTTTTTCTGGTTGCTCTTCTTGTTGCAGGCGTCCTTGTACAGCATGAATGGGTT 96066 Query 23167 GCCCGTCTCGACCTGCGACTCGATGATCGCTCGCCACATAGTCTGAGCGTGAACACGTCG 23226 ||| |||||| ||| | ||||| || || ||||| |||| || | | || Sbjct 96065 GCCGGTCTCGGTCTGGGCCTCGAGAATGGCGTACCACAGCTTCTGGGCCTTGATG-GTAA 96007 Query 23227 CACGTAC-CTGCCTTCTTCCTCGTACTTTTGGTACAACGCGTCAAATTCGGCACCGTAAC 23285 ||| | | |||||| ||||||||| | |||| || || || || | ||||| | Sbjct 96006 GACGGCCACGGCCTTCACTCTCGTACTTCTCATACAGAGCCTCGAACTCCTCGCCGTAGC 95947 Query 23286 AGTCGGCCAGGCCGGGCGATTGCATCGGACACATGAGACTCCACATTGAGTCATTTTCAA 23345 | || || || || || | | | || |||||||| |||| | | || ||||| | Sbjct 95946 AATCAGCTAGTCCAGGGCACTCATTAGGGCACATGAGTGTCCAGTTGGCGTTCTTTTCGA 95887 Query 23346 CGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCGCACCT 23405 | || |||| || ||||| || ||||| || || |||||| || ||||| || | || Sbjct 95886 CACGCTTCATGAACAGATCGGGAATCCACAGTGCTAGGAACAGATCACGGGCACGAATCT 95827 Query 23406 CCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCACGGCT 23465 |||| |||||| |||||| || ||| | || || ||||| || || |||||||||| Sbjct 95826 CCTCCTTGCCGTGGTTCTTGCGCAGATCAAGGAACTCGAACACATCGGCGTGCCACGGCT 95767 Query 23466 CGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTGCCGCCCTGATCGACGTAACGGGCCG 23525 | ||||||| |||||| || || || | ||| || || ||||| |||||||| ||||| | Sbjct 95766 CCAGGTAAATGGCAAAGGCACCGGGGCGCTTGTTACCACCCTGGTCGACGTAGCGGGCAG 95707 Query 23526 TGTTGTTGTACACTCTTAGCATCGGCACGAGACCGTTGGACGCGCCGCCTACGCCCGCCA 23585 |||||||| | || | ||||| || || | ||||| |||| |||| ||| || | Sbjct 95706 TGTTGTTGAAGACACGCAGCATGGGAACAATGCCGTTAGACGTGCCGTTGGTGCCAGCAA 95647 Query 23586 CACTCGAACCTTTTGCTCGAACGTTGTGAACGTGGAAACCTATGCCTCCGCCCGATTTCG 23645 ||| || | || || | ||| |||| | ||| || || ||| || || | Sbjct 95646 TGTACGAGCCAGTGGCACGGATACGGTGGACGTTCAGACCGATACCGCCGGCCATCTTGG 95587 Query 23646 ATATCATCGCGCATTGTTTCAGAGTGTCGTAGATGCCCTCGATGCTGTCCTCTTTGGTCG 23705 | ||||| || || ||||| || |||||||| || || |||||||| || || | Sbjct 95586 AGATCATAGCACAAGTCTTCAGCGTATCGTAGATACCATCAATGCTGTCGTCCTTCATAT 95527 Query 23706 CGACCAAGAAACACGAAGACATTTGCGCTTTGGGCGTAGCGGCCGAGAACAGTGTCGGGC 23765 | || | ||| ||||| || | || || | || || | || ||| || || || Sbjct 95526 CAACTAGGAAGCACGACGATAGCTGGGCCTGCGGTGTGCCAGCGTTGAATAGCGTGGGCG 95467 Query 23766 TGGCGTGCGTAAAGTATCCATTCGACAT-TAGATTGTACGTGTCGATGGCGGCATCAATG 23824 |||||| || ||| | | ||||| ||| ||||| || |||| | |||| | Sbjct 95466 AGGCGTGTGTGAAGAACTTGCTTGACATGTAG-TTGTAAGTCTCGAGCACACGGTCAACG 95408 Query 23825 TCCTCTCCGTGTATACCGATGGCGACGCGCATCATCATGTATTGAGGTCTCTCGACCGTG 23884 || || || || | ||| || ||||| ||||||| || || | |||||| | Sbjct 95407 CGGTCACCCCAGATGCCAACGGCCACACGCATGATCATGTGCTGCGGACGCTCGACAATC 95348 Query 23885 ACGCCGTTAATTTTGAACAGATATGAACGTTGCATCGTTTTAAATCCAAAATAGTCATAG 23944 ||||| | || | ||| || ||||| | | || || || ||||| || | ||| Sbjct 95347 TTGCCGTCTAGCTTAAGCAGGTACGAACGCTCTAGGGTCTTGAAGCCAAAGTACTGGTAG 95288 Query 23945 TTAAAGTCACGATCGTGCACTATGGCCGA 23973 || ||||||||||||| ||| ||||| || Sbjct 95287 TTGAAGTCACGATCGTACACAATGGCAGA 95259 >seq7 Length=77910 Score = 167 bits (184), Expect = 2e-36 Identities = 484/732 (66%), Gaps = 21/732 (3%) Strand=Plus/Plus Query 57570 ATTTGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGACCTG 57629 || ||| | |||||||| ||||| || ||||| |||||||||| || || | || || Sbjct 72527 ATCTGGCAGATGTACAAGAAGGCCGAGGCATCTTTTTGGACCGCTGAGGAGATTGATCTA 72586 Query 57630 TCTAAGGATCTGAGCGATTGGGATTCCC-TCAAAGAATCTGAGAGAAAT--TTTATTAAA 57686 || |||||||| ||| ||| | || || || | ||| ||| || || Sbjct 72587 TCCAAGGATCTCCACGACTGGAACAACCGTCTAACCAAGGACGAGCAATACTTCATCTCC 72646 Query 57687 CACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAGA 57746 ||| | |||| || || || || || ||||||||||| ||||||||| |||| || | Sbjct 72647 CACATCCTGGCTTTCTTTGCTGCCTCTGATGGTATTGTCAACGAGAATCTGGTTGAGCGT 72706 Query 57747 TTTTCACAAGAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCATT 57806 || || || || || | | ||||| | ||||| ||||| || || | || Sbjct 72707 TTCTCTGGTGAGGTCCAGATCCCCGAGGCTCGCTGCTTCTACGGTTTCCAGATCATGATG 72766 Query 57807 GAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAAGGACAACGAC 57866 || ||| | || || || | || || ||| | |||||||| ||| | ||||| | Sbjct 72767 GAGAACATCCACTCCGAGACCTACTCCCTATTGATCGATACTTACATCAAGGAGCCTGCT 72826 Query 57867 GAG-AAACGTAGACTGTTCAACGCGATCGAAACAATGCCCGCGATCGCCAAGAAGGCAGA 57925 || || || ||||||||||| || || || || ||| ||| | ||||| || Sbjct 72827 CAGCGCACATA-CCTGTTCAACGCCATTGACACCATCCCCTGCATCCGCCGTAAGGCTGA 72885 Query 57926 GTGGTCAATCAAATGGATAAAAAGCGCCACGG---CCACGTTCGCCGAGAGGCTAATCGC 57982 ||| | | || ||||| ||| || | |||| |||| | || | || | || Sbjct 72886 TTGGGCCCTTAAGTGGAT---TTGCGACAGAGAATCCACCTTCGGCCAGCGTCTCGTTGC 72942 Query 57983 GTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTTTGGATGAA 58042 || || || ||||| ||||| ||||| || || |||||| | || || ||| | Sbjct 72943 CTTTGCTGCTGTCGAGGGTATCTTCTTCTCTGGTGCCTTTGCTTCTATCTTCTGGCTACG 73002 Query 58043 GAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGACGAGGG 58102 || || || |||||||| || ||||| || |||||| | || || || || ||||| Sbjct 73003 TAAGCGTGGTCTGATGCCTGGTCTGACCTTCTCTAACGAGCTTATCTCCCGTGATGAGGG 73062 Query 58103 TCTCCATACTGATTTTGCGTGCCTAATGTACTCTCACATTGTCAATAAACCGAC---GC- 58158 | | || || |||||||| ||| | ||| ||| ||| ||| | ||||| | || Sbjct 73063 TTTGCACACAGATTTTGCTTGCTTGTTGTTCTCGCAC-TTG---AACAACCGTCCTAGCA 73118 Query 58159 GGGATCGCATCTTGGACATTATCACCGAGGCGGTCGCGATCGAAAATGAGTTTGTCACCG 58218 ||| | || | |||||||| || || || | ||||| || ||||| | || | Sbjct 73119 AGGAACTGGTCGAAAAGATTATCACTGATGCTGTTGTCATCGAGAAGGAGTTCTTAACTG 73178 Query 58219 AAGCCCTACC-GGTGGCCATGCTCGGTATGAACAATGATTTGATGTCAAAGTACATTGAG 58277 | || || || | || | |||| || |||||| ||| ||||| ||||||||||| Sbjct 73179 AGGCTCTTCCTTGCGGTC-TGCTAGGCATGAACGCCGATCTGATGAAGCAGTACATTGAG 73237 Query 58278 TTTGTTGCCGAC 58289 || ||||| ||| Sbjct 73238 TTCGTTGCTGAC 73249 >seq542 Length=123657 Score = 102 bits (112), Expect = 7e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || || || |||||||| || ||||| || ||||| |||| |||||| | || Sbjct 106919 ATGCAGATCTTTGTCAAGACTCTCACTGGCAAGACCATCACTCTCGAGGTTGAATCTTCA 106978 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | | || | || || | || ||||||||| || | || || |||||| Sbjct 106979 GATACCATTGACAACGTGAAGTCCAAGATTCAGGACAAGGAGGGTATTCCTCCGGACCAG 107038 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 |||||||| || |||||||| || ||| |||| ||| ||| || || || ||| Sbjct 107039 CAGCGTCTCATTTTCGCTGGTAAGCAGCTGGAGGACGGACGTACTCTGTCTGACTACAAC 107098 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 || || || || || ||||| |||||||| || | ||| | || |||| Sbjct 107099 ATCCAGAAGGAGTCTACTCTGCATCTGGTTCTGCGTCTGCGTGGTGGTA 107147 Score = 98.7 bits (108), Expect = 9e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || || || |||||||| || ||||| || ||||| | || || || | ||| Sbjct 107147 ATGCAGATCTTTGTCAAGACTCTCACTGGCAAGACCATCACTCTTGAGGTCGAGTCTTCC 107206 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | || | || || | || ||||||||| || | || || ||||| Sbjct 107207 GACACCATTGACAACGTGAAGTCCAAGATCCAGGACAAGGAGGGTATTCCCCCGGACCAA 107266 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 |||||||| || |||||||| || ||| |||| ||| | || | ||| || ||| Sbjct 107267 CAGCGTCTCATCTTCGCTGGTAAGCAGCTGGAGGACGGTCGCACCCTATCCGACTACAAC 107326 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 |||||||| || ||||| || |||||||| || Sbjct 107327 ATTCAAAAGGAGTCGACCCTACATCTGGTTCT 107358 Score = 84.2 bits (92), Expect = 2e-11 Identities = 150/219 (68%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 31203 TCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCCGACAGTGTCG 31262 |||| ||||| || || || || || |||||| |||| || || | || || | | ||| Sbjct 106701 TCGTTAAGACCCTCACCGGAAAGACCATCACCCTCGAAGTCGAGTCCTCTGATACTATCG 106760 Query 31263 AAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCTAA 31322 | | ||||| | || ||| ||||| ||| | || || || ||||||||||| | Sbjct 106761 ACAACGTCAAGTCCAAGATCCAGGATAAGGAGGGCATTCCTCCGGATCAGCAGCGTCTGA 106820 Query 31323 TATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAACATTCAAAAAG 31382 | ||||||||||| || | ||||| || || || || ||||| || || | Sbjct 106821 TTTTCGCTGGCAAGCAACTTGAAGATGGCCGCACCCTGTCTGACTACAACATCCAGAAGG 106880 Query 31383 AATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 | || ||||| |||||||| || | ||| | || |||| Sbjct 106881 AGTCTACTCTGCATCTGGTTCTACGTCTGCGTGGTGGTA 106919 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445763274063120