Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Davidsoniella_20virescens_20[genbank_20GCA_5F001513805.1_202016-01-
13] 561 sequences; 33,427,969 total letters
Query= NC_003102.1
Length=139342
Score E
Sequences producing significant alignments: (Bits) Value
seq85 369 3e-97
seq7 167 2e-36
seq542 102 7e-17
>seq85
Length=153405
Score = 369 bits (408), Expect = 3e-97
Identities = 1228/1889 (65%), Gaps = 37/1889 (2%)
Strand=Plus/Minus
Query 22104 TCTTG-TCCACTGTAAACTGTATGGCGTTTGCGGCCGGTTTGGTGCGAAGATAATACATG 22162
||||| || || || ||||| |||| ||||| | | ||| || || || |||||
Sbjct 97129 TCTTGGTCGACAGTGAACTGAATGGGAGCAGCGGCGGCCTGGGTACGTAGGTAGTACATA 97070
Query 22163 CCCGTCTTCAGACCCATCTTCCACGCGTAAAAATGTATCGACGTCAATTTTCCATAACTC 22222
|| ||||| ||||| | |||||| || ||| || || || | || || | |
Sbjct 97069 CCGGTCTTGAGACCGAGCTTCCAGCCGGCAAAGTGCATGCTGGTGATCTTACCCATAGTA 97010
Query 22223 GGCAAGTCCATGTACACATTGAACGACTGACTCTGATCGATAAACGCTCCTCGATCGGCG 22282
|| | ||||| | || | |||||| ||| ||||| || || || ||||||||
Sbjct 97009 GGGTCCTTCATGTGAATGTTCAGCGACTGCGACTGGTCGATGAAAGCGCCACGATCGGCA 96950
Query 22283 GCCATATTTATCAATGTACGCATCGACATTTCCCATACGGTCTTGTACAGTTGCCTGATC 22342
||||| | | | |||||| || || ||||| |||||||||||||| | ||||
Sbjct 96949 GCCATCTGCACAACGGTACGCTGAGAAATCTCCCAGACGGTCTTGTACAGGGCCTTGATG 96890
Query 22343 TCTAACGGTATCGATTCG--ATCCTCTGGACGGACCCGTTATTGTGTATGATCAAATTTT 22400
|| || || ||| | || | ||||| || ||||||| ||||| || |
Sbjct 96889 TCGGCGGGGAT--ATTAGGGATGTTTTGGACCGAACCGTTATCCGCAATGATACGGTTCT 96832
Query 22401 TAATCGTATCGTTCCACAAACCGATGGCGGTCAAATCTTTGACCAGATGACGGTTCACCA 22460
| || || ||| ||||| || | || || || | || |||| || |
Sbjct 96831 TCATGGTGTCGGACCACAGGCCAAGATCGACCAGGTCACGCAGCAACCAGGGGTTAACAA 96772
Query 22461 CTTGAAACTCGCCGGACAAGACGCGGCGTTGGTAAATGTTGGATGTGAACGGTTCGAAAG 22520
| || ||||| || | || || ||||| ||||| ||||| || ||| | || |||||
Sbjct 96771 CCTGGAACTCACCAGCCAGCACACGGCGCTGGTAGATGTTCGAGGTGTAAGGCTCGAAGC 96712
Query 22521 ATTCATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCATCGGCGCCAACAGTAGCG 22580
| || ||||| || || ||||||| |||||| || || ||||| || |||| |||||||
Sbjct 96711 ACTCGTTGTTGCCTAGGATCTGAGAGGTCGAGGCAGTTGGCATAGGAGCCAGGAGTAGCG 96652
Query 22581 AGTTTCTCAAGCCGTGCT--TTGAAATTTTACTCTTGAGCATCGACCAGTCCCACAGATC 22638
|||| | || |||||||| |||| | || || ||||| | |||||||||||| ||
Sbjct 96651 AGTTGCGCACGCCGTGCTGCTTGATCTGTTCCT--TGAGCGAGGCCCAGTCCCACAGGTC 96594
Query 22639 GGACGGCGTCACATTGTCCCACATATCGTATTGCAACACGCCGCGACTCGCCGGGCTGCC 22698
|| || || || |||||| ||| | |||| | || || | || ||
Sbjct 96593 ACTAGGGGTAACGTT---CCACATGTCGAACTGCAGGATACCCTGAGATACAGGCGAACC 96537
Query 22699 TTCGTACGTTTCGTACGGACCATATATCGCGGCAAGTTCGCAGCTCGCCTCCAACGCGCC 22758
|| || || ||| | ||| | | |||| ||||| || || || |
Sbjct 96536 CTCATAGGTGGAGTAAGTACCCTCGGTTTGAGCAATCTCGCACGAGGCAGTCAGGGCAGC 96477
Query 22759 GTAATATATAGTCTCGAAGATTTTCTTGTTCAA--TTCGG-CGGCGGC-GACGCTTTCGT 22814
|| || || ||||||||||| | |||||||| | ||| | |||| ||| |||
Sbjct 96476 GTGGTAGATGGTCTCGAAGATCTGCTTGTTCAGAGTGCGGGCCTCGGCAGAC----TCGA 96421
Query 22815 ACGGCATACGCATCATCACGAACGCGTCCGCCATACCCTGAACGCCTATACCGATCGGTC 22874
| ||||| || | | ||| || || || | |||||| || || | ||| || || |
Sbjct 96420 AAGGCATGCGTAGGGCTAGGAAAGCATCGGCTAGACCCTGGACACCAACACCAATGGGGC 96361
Query 22875 GGTTTTTCAGATTCGACACTTTTG--CCTCGGGCAAAGGATACCAATTCGAATCGATTGT 22932
| | || || | || || |||| |||| ||| || || |||||| |
Sbjct 96360 GATGACGCATGTTG--CTGTTGTGAGCCTCAGGCACAGGGTAGTGGTTGACATCGATAAT 96303
Query 22933 TCTGTTCAAGTTTCTGGTCACAATTTTCGTTATNNNNNNNNNNNNNTCAAAGTCGTAAAC 22992
| |||| ||| | || | || || || | || ||||| |
Sbjct 96302 GCGATTCAGGTTACGCACGACCACCTTGGTGATCTCGTGCAGCTTCTGGAAATCGTACTC 96243
Query 22993 GCCCGA-TTGTA--CAACAAACT-TGTTGACGGCGATCGAGGCAAGATTGCATACGGCCA 23048
|| ||||| | ||||| || | | ||| | |||||| || ||||||||||| |
Sbjct 96242 TCCTTTGTTGTAGTCGACAAAGGATGGT-AGGGCTAGCGAGGCTAGGTTGCATACGGCAA 96184
Query 23049 CCTCGTCTTTGGA-CGT-GTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGT 23106
|||| || ||| || |||||| | ||||| || ||||||||| | || ||
Sbjct 96183 CCTCATCG--GGAGCGCAGTACTCGATGATTTCAGTGCATAGATTGGAGCTGCGGATAGT 96126
Query 23107 GCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGT 23166
||| | || |||||||||| || ||||| | |||||||| |||||| | || |
Sbjct 96125 GCCTAGGTTTTTCTGGTTGCTCTTCTTGTTGCAGGCGTCCTTGTACAGCATGAATGGGTT 96066
Query 23167 GCCCGTCTCGACCTGCGACTCGATGATCGCTCGCCACATAGTCTGAGCGTGAACACGTCG 23226
||| |||||| ||| | ||||| || || ||||| |||| || | | ||
Sbjct 96065 GCCGGTCTCGGTCTGGGCCTCGAGAATGGCGTACCACAGCTTCTGGGCCTTGATG-GTAA 96007
Query 23227 CACGTAC-CTGCCTTCTTCCTCGTACTTTTGGTACAACGCGTCAAATTCGGCACCGTAAC 23285
||| | | |||||| ||||||||| | |||| || || || || | ||||| |
Sbjct 96006 GACGGCCACGGCCTTCACTCTCGTACTTCTCATACAGAGCCTCGAACTCCTCGCCGTAGC 95947
Query 23286 AGTCGGCCAGGCCGGGCGATTGCATCGGACACATGAGACTCCACATTGAGTCATTTTCAA 23345
| || || || || || | | | || |||||||| |||| | | || ||||| |
Sbjct 95946 AATCAGCTAGTCCAGGGCACTCATTAGGGCACATGAGTGTCCAGTTGGCGTTCTTTTCGA 95887
Query 23346 CGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCGCACCT 23405
| || |||| || ||||| || ||||| || || |||||| || ||||| || | ||
Sbjct 95886 CACGCTTCATGAACAGATCGGGAATCCACAGTGCTAGGAACAGATCACGGGCACGAATCT 95827
Query 23406 CCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCACGGCT 23465
|||| |||||| |||||| || ||| | || || ||||| || || ||||||||||
Sbjct 95826 CCTCCTTGCCGTGGTTCTTGCGCAGATCAAGGAACTCGAACACATCGGCGTGCCACGGCT 95767
Query 23466 CGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTGCCGCCCTGATCGACGTAACGGGCCG 23525
| ||||||| |||||| || || || | ||| || || ||||| |||||||| ||||| |
Sbjct 95766 CCAGGTAAATGGCAAAGGCACCGGGGCGCTTGTTACCACCCTGGTCGACGTAGCGGGCAG 95707
Query 23526 TGTTGTTGTACACTCTTAGCATCGGCACGAGACCGTTGGACGCGCCGCCTACGCCCGCCA 23585
|||||||| | || | ||||| || || | ||||| |||| |||| ||| || |
Sbjct 95706 TGTTGTTGAAGACACGCAGCATGGGAACAATGCCGTTAGACGTGCCGTTGGTGCCAGCAA 95647
Query 23586 CACTCGAACCTTTTGCTCGAACGTTGTGAACGTGGAAACCTATGCCTCCGCCCGATTTCG 23645
||| || | || || | ||| |||| | ||| || || ||| || || |
Sbjct 95646 TGTACGAGCCAGTGGCACGGATACGGTGGACGTTCAGACCGATACCGCCGGCCATCTTGG 95587
Query 23646 ATATCATCGCGCATTGTTTCAGAGTGTCGTAGATGCCCTCGATGCTGTCCTCTTTGGTCG 23705
| ||||| || || ||||| || |||||||| || || |||||||| || || |
Sbjct 95586 AGATCATAGCACAAGTCTTCAGCGTATCGTAGATACCATCAATGCTGTCGTCCTTCATAT 95527
Query 23706 CGACCAAGAAACACGAAGACATTTGCGCTTTGGGCGTAGCGGCCGAGAACAGTGTCGGGC 23765
| || | ||| ||||| || | || || | || || | || ||| || || ||
Sbjct 95526 CAACTAGGAAGCACGACGATAGCTGGGCCTGCGGTGTGCCAGCGTTGAATAGCGTGGGCG 95467
Query 23766 TGGCGTGCGTAAAGTATCCATTCGACAT-TAGATTGTACGTGTCGATGGCGGCATCAATG 23824
|||||| || ||| | | ||||| ||| ||||| || |||| | |||| |
Sbjct 95466 AGGCGTGTGTGAAGAACTTGCTTGACATGTAG-TTGTAAGTCTCGAGCACACGGTCAACG 95408
Query 23825 TCCTCTCCGTGTATACCGATGGCGACGCGCATCATCATGTATTGAGGTCTCTCGACCGTG 23884
|| || || || | ||| || ||||| ||||||| || || | |||||| |
Sbjct 95407 CGGTCACCCCAGATGCCAACGGCCACACGCATGATCATGTGCTGCGGACGCTCGACAATC 95348
Query 23885 ACGCCGTTAATTTTGAACAGATATGAACGTTGCATCGTTTTAAATCCAAAATAGTCATAG 23944
||||| | || | ||| || ||||| | | || || || ||||| || | |||
Sbjct 95347 TTGCCGTCTAGCTTAAGCAGGTACGAACGCTCTAGGGTCTTGAAGCCAAAGTACTGGTAG 95288
Query 23945 TTAAAGTCACGATCGTGCACTATGGCCGA 23973
|| ||||||||||||| ||| ||||| ||
Sbjct 95287 TTGAAGTCACGATCGTACACAATGGCAGA 95259
>seq7
Length=77910
Score = 167 bits (184), Expect = 2e-36
Identities = 484/732 (66%), Gaps = 21/732 (3%)
Strand=Plus/Plus
Query 57570 ATTTGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGACCTG 57629
|| ||| | |||||||| ||||| || ||||| |||||||||| || || | || ||
Sbjct 72527 ATCTGGCAGATGTACAAGAAGGCCGAGGCATCTTTTTGGACCGCTGAGGAGATTGATCTA 72586
Query 57630 TCTAAGGATCTGAGCGATTGGGATTCCC-TCAAAGAATCTGAGAGAAAT--TTTATTAAA 57686
|| |||||||| ||| ||| | || || || | ||| ||| || ||
Sbjct 72587 TCCAAGGATCTCCACGACTGGAACAACCGTCTAACCAAGGACGAGCAATACTTCATCTCC 72646
Query 57687 CACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAGA 57746
||| | |||| || || || || || ||||||||||| ||||||||| |||| || |
Sbjct 72647 CACATCCTGGCTTTCTTTGCTGCCTCTGATGGTATTGTCAACGAGAATCTGGTTGAGCGT 72706
Query 57747 TTTTCACAAGAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCATT 57806
|| || || || || | | ||||| | ||||| ||||| || || | ||
Sbjct 72707 TTCTCTGGTGAGGTCCAGATCCCCGAGGCTCGCTGCTTCTACGGTTTCCAGATCATGATG 72766
Query 57807 GAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAAGGACAACGAC 57866
|| ||| | || || || | || || ||| | |||||||| ||| | ||||| |
Sbjct 72767 GAGAACATCCACTCCGAGACCTACTCCCTATTGATCGATACTTACATCAAGGAGCCTGCT 72826
Query 57867 GAG-AAACGTAGACTGTTCAACGCGATCGAAACAATGCCCGCGATCGCCAAGAAGGCAGA 57925
|| || || ||||||||||| || || || || ||| ||| | ||||| ||
Sbjct 72827 CAGCGCACATA-CCTGTTCAACGCCATTGACACCATCCCCTGCATCCGCCGTAAGGCTGA 72885
Query 57926 GTGGTCAATCAAATGGATAAAAAGCGCCACGG---CCACGTTCGCCGAGAGGCTAATCGC 57982
||| | | || ||||| ||| || | |||| |||| | || | || | ||
Sbjct 72886 TTGGGCCCTTAAGTGGAT---TTGCGACAGAGAATCCACCTTCGGCCAGCGTCTCGTTGC 72942
Query 57983 GTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTTTGGATGAA 58042
|| || || ||||| ||||| ||||| || || |||||| | || || ||| |
Sbjct 72943 CTTTGCTGCTGTCGAGGGTATCTTCTTCTCTGGTGCCTTTGCTTCTATCTTCTGGCTACG 73002
Query 58043 GAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGACGAGGG 58102
|| || || |||||||| || ||||| || |||||| | || || || || |||||
Sbjct 73003 TAAGCGTGGTCTGATGCCTGGTCTGACCTTCTCTAACGAGCTTATCTCCCGTGATGAGGG 73062
Query 58103 TCTCCATACTGATTTTGCGTGCCTAATGTACTCTCACATTGTCAATAAACCGAC---GC- 58158
| | || || |||||||| ||| | ||| ||| ||| ||| | ||||| | ||
Sbjct 73063 TTTGCACACAGATTTTGCTTGCTTGTTGTTCTCGCAC-TTG---AACAACCGTCCTAGCA 73118
Query 58159 GGGATCGCATCTTGGACATTATCACCGAGGCGGTCGCGATCGAAAATGAGTTTGTCACCG 58218
||| | || | |||||||| || || || | ||||| || ||||| | || |
Sbjct 73119 AGGAACTGGTCGAAAAGATTATCACTGATGCTGTTGTCATCGAGAAGGAGTTCTTAACTG 73178
Query 58219 AAGCCCTACC-GGTGGCCATGCTCGGTATGAACAATGATTTGATGTCAAAGTACATTGAG 58277
| || || || | || | |||| || |||||| ||| ||||| |||||||||||
Sbjct 73179 AGGCTCTTCCTTGCGGTC-TGCTAGGCATGAACGCCGATCTGATGAAGCAGTACATTGAG 73237
Query 58278 TTTGTTGCCGAC 58289
|| ||||| |||
Sbjct 73238 TTCGTTGCTGAC 73249
>seq542
Length=123657
Score = 102 bits (112), Expect = 7e-17
Identities = 160/229 (70%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
||||| || || || |||||||| || ||||| || ||||| |||| |||||| | ||
Sbjct 106919 ATGCAGATCTTTGTCAAGACTCTCACTGGCAAGACCATCACTCTCGAGGTTGAATCTTCA 106978
Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312
|| | | || | || || | || ||||||||| || | || || ||||||
Sbjct 106979 GATACCATTGACAACGTGAAGTCCAAGATTCAGGACAAGGAGGGTATTCCTCCGGACCAG 107038
Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372
|||||||| || |||||||| || ||| |||| ||| ||| || || || |||
Sbjct 107039 CAGCGTCTCATTTTCGCTGGTAAGCAGCTGGAGGACGGACGTACTCTGTCTGACTACAAC 107098
Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421
|| || || || || ||||| |||||||| || | ||| | || ||||
Sbjct 107099 ATCCAGAAGGAGTCTACTCTGCATCTGGTTCTGCGTCTGCGTGGTGGTA 107147
Score = 98.7 bits (108), Expect = 9e-16
Identities = 149/212 (70%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
||||| || || || |||||||| || ||||| || ||||| | || || || | |||
Sbjct 107147 ATGCAGATCTTTGTCAAGACTCTCACTGGCAAGACCATCACTCTTGAGGTCGAGTCTTCC 107206
Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312
|||| | || | || || | || ||||||||| || | || || |||||
Sbjct 107207 GACACCATTGACAACGTGAAGTCCAAGATCCAGGACAAGGAGGGTATTCCCCCGGACCAA 107266
Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372
|||||||| || |||||||| || ||| |||| ||| | || | ||| || |||
Sbjct 107267 CAGCGTCTCATCTTCGCTGGTAAGCAGCTGGAGGACGGTCGCACCCTATCCGACTACAAC 107326
Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404
|||||||| || ||||| || |||||||| ||
Sbjct 107327 ATTCAAAAGGAGTCGACCCTACATCTGGTTCT 107358
Score = 84.2 bits (92), Expect = 2e-11
Identities = 150/219 (68%), Gaps = 0/219 (0%)
Strand=Plus/Plus
Query 31203 TCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCCGACAGTGTCG 31262
|||| ||||| || || || || || |||||| |||| || || | || || | | |||
Sbjct 106701 TCGTTAAGACCCTCACCGGAAAGACCATCACCCTCGAAGTCGAGTCCTCTGATACTATCG 106760
Query 31263 AAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCTAA 31322
| | ||||| | || ||| ||||| ||| | || || || ||||||||||| |
Sbjct 106761 ACAACGTCAAGTCCAAGATCCAGGATAAGGAGGGCATTCCTCCGGATCAGCAGCGTCTGA 106820
Query 31323 TATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAACATTCAAAAAG 31382
| ||||||||||| || | ||||| || || || || ||||| || || |
Sbjct 106821 TTTTCGCTGGCAAGCAACTTGAAGATGGCCGCACCCTGTCTGACTACAACATCCAGAAGG 106880
Query 31383 AATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421
| || ||||| |||||||| || | ||| | || ||||
Sbjct 106881 AGTCTACTCTGCATCTGGTTCTACGTCTGCGTGGTGGTA 106919
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 445763274063120
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