Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Davidsoniella_20virescens_20[genbank_20GCA_5F001513805.1_202016-01- 13] 561 sequences; 33,427,969 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq7 188 9e-43 >seq7 Length=77910 Score = 188 bits (208), Expect = 9e-43 Identities = 558/851 (66%), Gaps = 12/851 (1%) Strand=Plus/Minus Query 33291 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTT 33350 |||||||| ||||| ||||| || || || || || || || ||| ||| || || || Sbjct 73374 TTTTGGTAGTCACCAACACGCTTCTCAAAGAAGTTGGTCTTGCCTCCCAGAGAAATGTTC 73315 Query 33351 TCCATGAAATCAAACGGATTGGTAACATTGTAAAtttttttAAATCCCAATTCAGAAATC 33410 |||||||| || || || || ||| || ||| | ||| | || | || | Sbjct 73314 TCCATGAAGTCGAAGGGGTTTGTAGCACGGTACACTTTGTCGTTGCCAAGGGCAACCAGG 73255 Query 33411 AATCTATCTGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATGAGT 33470 | | || || ||||| || || || ||||||| || ||||| |||| || Sbjct 73254 AGACGGTCAGCAACGAACTCAATGTACTGCTTCATCAGATCGGCGTTCATGCCTAGCAGA 73195 Query 33471 TTAACTGGAAGAGCCACAGT-AAGAAATTCTTGTTCAATGGATACCGCATTTGTTATAAT 33529 ||||||||| |||| ||||| | ||| | | ||| || |||| || ||||| Sbjct 73194 CCGCAAGGAAGAGCCTCAGTTAAGAACTCCTTCT-CGATGACAACAGCATCAGTGATAAT 73136 Query 33530 AAAT-CTAACGGTTTCTTCACTCGGT-GGATGTAATAAATGTTTAAACATCAAACATGCG 33587 | | | | ||| ||| || || || ||| || || |||| ||| || || Sbjct 73135 CTTTTCGACCAGTTCCTTG-CTAGGACGGTTGTTC-AAGTGCGAGAACAACAAGCAAGCA 73078 Query 33588 AAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGC 33647 ||||| ||||| |||||| || | || | |||||||| || || || || ||| Sbjct 73077 AAATCTGTGTGCAAACCCTCATCACGGGAGATAAGCTCGTTAGAGAAGGTCAGACCAGGC 73018 Query 33648 ATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCT 33707 || || |||||||| ||||| || || ||||| || | || || |||||||| || Sbjct 73017 ATCAGACCACGCTTACGTAGCCAGAAGATAGAAGCAAAGGCACCAGAGAAGAAGATACCC 72958 Query 33708 TCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGG---CGCTGTCATGTATCCAC 33764 || || ||||||||||||| || | || || | || | ||||| |||||| Sbjct 72957 TCGACAGCAGCAAAGGCAACGAGACGCTGGCCGAAGGTGGATTCTCTGTCGCAAATCCAC 72898 Query 33765 TTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGA 33824 || | |||||||| ||||| | || || || || || ||||| || || || Sbjct 72897 TTAAGGGCCCAATCAGCCTTACGGCGGATGCAGGGGATGGTGTCAATGGCGTTGAACAGG 72838 Query 33825 TAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAA 33884 || | | | | || || | |||||||||||||| || || | || || Sbjct 72837 TATGTGCGCTGAGCAGGCTCCTTGATGTAAGTATCGATCAATAGGGAGTAGGTCTCGGAG 72778 Query 33885 TGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACT 33944 || ||||| || || ||||| || |||||||| || | |||||||| ||||| || Sbjct 72777 TGGATGTTCTCCATCATGATCTGGAAACCGTAGAAGCAGCGAGCCTCGGGGATCTGGACC 72718 Query 33945 TCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGCTGCAAAAAAC 34004 || | | || || || | | ||| || || || || |||||| ||| ||||| || Sbjct 72717 TCACCAGAGAAACGCTCAACCAGATTCTCGTTGACAATACCATCAGAGGCAGCAAAGAAA 72658 Query 34005 GCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTA---GTTTATTCCAATCATTG 34061 |||| | || || || |||| ||||| |||| | || ||||| || | | Sbjct 72657 GCCAGGATGTGGGAGATGAAGTATTGCTCGTCCTTGGTTAGACGGTTGTTCCAGTCGTGG 72598 Query 34062 ATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATAC 34121 | ||| || |||| ||| | || || | |||||||| |||||||| ||||| || ||| Sbjct 72597 AGATCCTTGGATAGATCAATCTCCTCAGCGGTCCAAAAAGATGCCTCGGCCTTCTTGTAC 72538 Query 34122 ATATTCCAGAT 34132 || | |||||| Sbjct 72537 ATCTGCCAGAT 72527 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629813183404080