Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Davidsoniella_20virescens_20[genbank_20GCA_5F001513805.1_202016-01- 13] 561 sequences; 33,427,969 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq7 105 6e-18 >seq7 Length=77910 Score = 105 bits (116), Expect = 6e-18 Identities = 534/843 (63%), Gaps = 11/843 (1%) Strand=Plus/Minus Query 13581 TTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTT 13640 ||||| || |||| ||| | || ||||||||||| || || ||| |||| || || || Sbjct 73374 TTTTGGTAGTCACCAACACGCTTCTCAAAGAAGTTGGTCTTGCCTCCCAGAGAAATGTTC 73315 Query 13641 TCCATAAAATCAAATGGATTTATTGACATAAACACTTTATCACAACCTAGTTCTAATAGT 13700 ||||| || || || || ||| | | ||||||| || || || | | || Sbjct 73314 TCCATGAAGTCGAAGGGGTTTGTAGCACGGTACACTTTGTCGTTGCCAAGGGCAACCAGG 73255 Query 13701 AATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGT 13760 | | ||||||| |||||||| || || ||| | ||| ||||| |||| || Sbjct 73254 AGACGGTCAGCAACGAACTCAATGTACTGCTTCATCAGATCGGCGTTCATGCCTAGCAGA 73195 Query 13761 TTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACA-CAGCCTCTTTTATAAT 13819 ||||| | ||||| || || || || || |||| |||| || | ||||| Sbjct 73194 CCGCAAGGAAGAGCCTCAGTTAAGAACTCCTTCTCGAT-GACAACAGCATCAGTGATAAT 73136 Query 13820 AATTGTAATAATCTCATTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAACACGCAAA 13879 || | | || || |||| | | || | || || | || || ||||| Sbjct 73135 CTTTTCGACCAGTTCCTTGCTAGGACGGTTGTTCAAGTGCGAGAACAACAAGCAAGCAAA 73076 Query 13880 ATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCAT 13939 ||| || | |||||||| | ||||| ||||| || || || | || ||||| Sbjct 73075 ATCTGTGTGCAAACCCTCATCACGGGAGATAAGCTCGTTAGAGAAGGTCAGACCAGGCAT 73016 Query 13940 CAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCTC 13999 || || || || || ||| || || | |||||| | || || ||||| || ||||| Sbjct 73015 CAGACCACGCTTACGTAGCCAGAAGATAGAAGCAAAGGCACCAGAGAAGAAGATACCCTC 72956 Query 14000 AACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATCCATTT 14059 || |||||||| || | | || | || || | | || | ||| | ||||| || Sbjct 72955 GACAGCAGCAAAGGCAACGAGACGCTGGCCGAAGGTGGATTCTCTGTCGCAAATCCACTT 72896 Query 14060 TCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATAAATA 14119 ||||| |||| || || | || || ||||| || || || | || Sbjct 72895 AAGGGCCCAATCAGCCTTACGGCGGATGCAGGGGATGGTGTCAATGGCGTTGAACAGGTA 72836 Query 14120 TTCCTTCTCTTTAG--TACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAG 14177 | || || | ||||| |||| ||||| || | || | || | || ||| Sbjct 72835 TGTGCGCTGAGCAGGCTCCTTGA--TGTAAGTATCGATCAATAGGGAGTAGGTCTCGGAG 72778 Query 14178 TGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTCCGACCATTGTACT 14237 || ||||| ||||| ||||| ||||| || ||||| | ||| || | || || Sbjct 72777 TGGATGTTCTCCATCATGATCTGGAAACCGTAGAAGCAGCGAGCCTCGGGGATCTGGACC 72718 Query 14238 TC-CGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCAAAAAA 14296 || | || ||| | || ||| ||| || || || ||||||||| || ||||| || Sbjct 72717 TCACCAGAGAAA-CGCTCAACCAGATTCTCGTTGACAATACCATCAGAGGCAGCAAAGAA 72659 Query 14297 TGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGA---GTTTTTTCCAATCGGA 14353 |||| |||| || ||||||||||| || ||| | | | || ||||| ||| Sbjct 72658 AGCCAGGATGTGGGAGATGAAGTATTGCTCGTCCTTGGTTAGACGGTTGTTCCAGTCGTG 72599 Query 14354 TAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGCTTTTTTATA 14413 | |||||| || ||||| | || ||| | ||||||||| || | || || || || Sbjct 72598 GAGATCCTTGGATAGATCAATCTCCTCAGCGGTCCAAAAAGATGCCTCGGCCTTCTTGTA 72539 Query 14414 CAT 14416 ||| Sbjct 72538 CAT 72536 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479724635907400