Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Davidsoniella_20virescens_20[genbank_20GCA_5F001513805.1_202016-01- 13] 561 sequences; 33,427,969 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq7 165 1e-35 seq85 95.1 2e-14 >seq7 Length=77910 Score = 165 bits (182), Expect = 1e-35 Identities = 377/566 (67%), Gaps = 6/566 (1%) Strand=Plus/Minus Query 42056 AACATCAAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAA 42115 |||| ||| || || ||||| ||||| ||||||||| | || | ||||| || Sbjct 73092 AACAACAAGCAAGCAAAATCTGTGTGCAAACCCTCATCACGGGAGATAAGCTCGTTAGAG 73033 Query 42116 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCA 42175 || || || || ||||| || |||||||| ||||| || ||||| ||||| | ||| Sbjct 73032 AAGGTCAGACCAGGCATCAGACCACGCTTACGTAGCCAGAAGATAGAAGCAAAGGCACCA 72973 Query 42176 GAAAAGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGG---CA 42232 || |||||||| || || || || |||||||||| || | || || | || | Sbjct 72972 GAGAAGAAGATACCCTCGACAGCAGCAAAGGCAACGAGACGCTGGCCGAAGGTGGATTCT 72913 Query 42233 CTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCT 42292 ||||| |||||||| | |||||||| ||||| | || || || || || Sbjct 72912 CTGTCGCAAATCCACTTAAGGGCCCAATCAGCCTTACGGCGGATGCAGGGGATGGTGTCA 72853 Query 42293 ATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGA 42352 ||||| || || || || | | | | || || | || ||||||||||| || Sbjct 72852 ATGGCGTTGAACAGGTATGTGCGCTGAGCAGGCTCCTTGATGTAAGTATCGATCAATAGG 72793 Query 42353 CTATACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCC 42412 || | || || || ||||| || || ||||| || |||||||| || | ||| Sbjct 72792 GAGTAGGTCTCGGAGTGGATGTTCTCCATCATGATCTGGAAACCGTAGAAGCAGCGAGCC 72733 Query 42413 TCGGTAACCTGTACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCA 42472 |||| | ||| || || | | || || ||| | | ||| ||||| || || || ||| Sbjct 72732 TCGGGGATCTGGACCTCACCAGAGAAACGCTCAACCAGATTCTCGTTGACAATACCATCA 72673 Query 42473 CTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCCGGTGTTA---AT 42529 ||| ||||| || |||| | || || || |||| |||||| |||| Sbjct 72672 GAGGCAGCAAAGAAAGCCAGGATGTGGGAGATGAAGTATTGCTCGTCCTTGGTTAGACGG 72613 Query 42530 TTATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCT 42589 || ||||| || | || ||| || |||| ||| | || || | |||||||| ||||| Sbjct 72612 TTGTTCCAGTCGTGGAGATCCTTGGATAGATCAATCTCCTCAGCGGTCCAAAAAGATGCC 72553 Query 42590 TCTGCCTTTTTATACATATTCCAGAT 42615 || ||||| || ||||| | |||||| Sbjct 72552 TCGGCCTTCTTGTACATCTGCCAGAT 72527 >seq85 Length=153405 Score = 95.1 bits (104), Expect = 2e-14 Identities = 127/174 (73%), Gaps = 2/174 (1%) Strand=Plus/Minus Query 70801 GTAAACTGAATGGGAGAGGATGCGGCTTTCGTACGTAGATAGTACATGCCTGTTTTTAGA 70860 || ||||||||||||| | ||||| | |||||||| |||||||| || || || ||| Sbjct 97117 GTGAACTGAATGGGAGCAGCGGCGGCCTGGGTACGTAGGTAGTACATACCGGTCTTGAGA 97058 Query 70861 CCGAGACTCCATCCGTAAAAATGCATACTCGTTA-GTTTGGAATAGCTAGGATCGGCTAT 70919 ||||| |||| ||| ||| ||||| || || | || |||| |||| || || Sbjct 97057 CCGAGCTTCCAGCCGGCAAAGTGCATGCTGGTGATCTTACCCATAG-TAGGGTCCTTCAT 96999 Query 70920 GTGAATATTCATCGACTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCAT 70973 |||||| |||| |||||| || |||||||| || || | || |||||||| Sbjct 96998 GTGAATGTTCAGCGACTGCGACTGGTCGATGAAAGCGCCACGATCGGCAGCCAT 96945 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671134493636360