Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Davidsoniella_20virescens_20[genbank_20GCA_5F001513805.1_202016-01-
13] 561 sequences; 33,427,969 total letters
Query= NC_004105.1
Length=209771
Score E
Sequences producing significant alignments: (Bits) Value
seq7 165 1e-35
seq85 95.1 2e-14
>seq7
Length=77910
Score = 165 bits (182), Expect = 1e-35
Identities = 377/566 (67%), Gaps = 6/566 (1%)
Strand=Plus/Minus
Query 42056 AACATCAAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAA 42115
|||| ||| || || ||||| ||||| ||||||||| | || | ||||| ||
Sbjct 73092 AACAACAAGCAAGCAAAATCTGTGTGCAAACCCTCATCACGGGAGATAAGCTCGTTAGAG 73033
Query 42116 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCA 42175
|| || || || ||||| || |||||||| ||||| || ||||| ||||| | |||
Sbjct 73032 AAGGTCAGACCAGGCATCAGACCACGCTTACGTAGCCAGAAGATAGAAGCAAAGGCACCA 72973
Query 42176 GAAAAGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGG---CA 42232
|| |||||||| || || || || |||||||||| || | || || | || |
Sbjct 72972 GAGAAGAAGATACCCTCGACAGCAGCAAAGGCAACGAGACGCTGGCCGAAGGTGGATTCT 72913
Query 42233 CTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCT 42292
||||| |||||||| | |||||||| ||||| | || || || || ||
Sbjct 72912 CTGTCGCAAATCCACTTAAGGGCCCAATCAGCCTTACGGCGGATGCAGGGGATGGTGTCA 72853
Query 42293 ATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGA 42352
||||| || || || || | | | | || || | || ||||||||||| ||
Sbjct 72852 ATGGCGTTGAACAGGTATGTGCGCTGAGCAGGCTCCTTGATGTAAGTATCGATCAATAGG 72793
Query 42353 CTATACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCC 42412
|| | || || || ||||| || || ||||| || |||||||| || | |||
Sbjct 72792 GAGTAGGTCTCGGAGTGGATGTTCTCCATCATGATCTGGAAACCGTAGAAGCAGCGAGCC 72733
Query 42413 TCGGTAACCTGTACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCA 42472
|||| | ||| || || | | || || ||| | | ||| ||||| || || || |||
Sbjct 72732 TCGGGGATCTGGACCTCACCAGAGAAACGCTCAACCAGATTCTCGTTGACAATACCATCA 72673
Query 42473 CTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCCGGTGTTA---AT 42529
||| ||||| || |||| | || || || |||| |||||| ||||
Sbjct 72672 GAGGCAGCAAAGAAAGCCAGGATGTGGGAGATGAAGTATTGCTCGTCCTTGGTTAGACGG 72613
Query 42530 TTATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCT 42589
|| ||||| || | || ||| || |||| ||| | || || | |||||||| |||||
Sbjct 72612 TTGTTCCAGTCGTGGAGATCCTTGGATAGATCAATCTCCTCAGCGGTCCAAAAAGATGCC 72553
Query 42590 TCTGCCTTTTTATACATATTCCAGAT 42615
|| ||||| || ||||| | ||||||
Sbjct 72552 TCGGCCTTCTTGTACATCTGCCAGAT 72527
>seq85
Length=153405
Score = 95.1 bits (104), Expect = 2e-14
Identities = 127/174 (73%), Gaps = 2/174 (1%)
Strand=Plus/Minus
Query 70801 GTAAACTGAATGGGAGAGGATGCGGCTTTCGTACGTAGATAGTACATGCCTGTTTTTAGA 70860
|| ||||||||||||| | ||||| | |||||||| |||||||| || || || |||
Sbjct 97117 GTGAACTGAATGGGAGCAGCGGCGGCCTGGGTACGTAGGTAGTACATACCGGTCTTGAGA 97058
Query 70861 CCGAGACTCCATCCGTAAAAATGCATACTCGTTA-GTTTGGAATAGCTAGGATCGGCTAT 70919
||||| |||| ||| ||| ||||| || || | || |||| |||| || ||
Sbjct 97057 CCGAGCTTCCAGCCGGCAAAGTGCATGCTGGTGATCTTACCCATAG-TAGGGTCCTTCAT 96999
Query 70920 GTGAATATTCATCGACTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCAT 70973
|||||| |||| |||||| || |||||||| || || | || ||||||||
Sbjct 96998 GTGAATGTTCAGCGACTGCGACTGGTCGATGAAAGCGCCACGATCGGCAGCCAT 96945
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 671134493636360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |