Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Davidsoniella_20virescens_20[genbank_20GCA_5F001513805.1_202016-01- 13] 561 sequences; 33,427,969 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq85 109 8e-19 >seq85 Length=153405 Score = 109 bits (120), Expect = 8e-19 Identities = 304/461 (66%), Gaps = 4/461 (1%) Strand=Plus/Plus Query 96876 CAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGGCACGCGGAC 96935 ||||| || || || || || || || | ||| | ||| |||| || |||||||| || Sbjct 95724 CAGGGTGGTAACAAGCGCCCCGGTGCCTTTGCCATTTACCTGGAGCCGTGGCACGCCGAT 95783 Query 96936 GTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACGAGCCAGGGAC 96995 || || || || | || ||||||| ||| ||| || ||| || ||| | || Sbjct 95784 GTGTTCGAGTTCCTTGATCTGCGCAAGAACCACGGCAAGGAGGAGATTCGTGCCCGTGAT 95843 Query 96996 TTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAACGACGGTGGCTAC 97055 |||| ||||| ||| | || ||| ||||||||||||| ||| | | | | || Sbjct 95844 CTGTTCCTAGCACTGTGGATTCCCGATCTGTTCATGAAGCGTGTCGAAAAGAACGCCAAC 95903 Query 97056 TGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGGGCGAAGAGTTT 97115 |||| || |||||||| | || || || || | ||||||| ||||| ||||| Sbjct 95904 TGGACACTCATGTGCCCTAATGAGTGCCCTGGACTAGCTGATTGCTACGGCGAGGAGTTC 95963 Query 97116 GAGGCCAAGTACACGGCCTACGAGCAAGAGGGCCG-ATACGTGAGACGAGTCGATGCACG 97174 ||||| ||| | |||||| || ||||| ||| || | || | || | Sbjct 95964 GAGGCTCTGTATGAGAAGTACGAGAGTGAAGGCCGTGGCCGTCTTACCA-TCAAGGC-CC 96021 Query 97175 AGAA-CTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTCCGTACATTCTCT 97233 |||| |||||| | ||||| | ||| ||| ||||| || | || | ||| || | Sbjct 96022 AGAAGCTGTGGTACGCCATTCTCGAGGCCCAGACCGAGACCGGCAACCCATTCATGCTGT 96081 Query 97234 ACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCATCAAGGGCTCCA 97293 ||||||| || || || |||||||| || | ||||| ||| |||||| Sbjct 96082 ACAAGGACGCCTGCAACAAGAAGAGCAACCAGAAAAACCTAGGCACTATCCGCAGCTCCA 96141 Query 97294 ATCTGTGCACGGAAATTGTAGAGTACGCCTCTCCGGACGAG 97334 |||| ||||| ||||| | |||||| | |||| || ||| Sbjct 96142 ATCTATGCACTGAAATCATCGAGTACTGCGCTCCCGATGAG 96182 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741054003322360