Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Davidsoniella_20virescens_20[genbank_20GCA_5F001513805.1_202016-01- 13] 561 sequences; 33,427,969 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq542 140 7e-28 seq548 87.8 4e-12 >seq542 Length=123657 Score = 140 bits (154), Expect = 7e-28 Identities = 158/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407 || || ||||| | ||||| || ||||| || || |||||||| ||||| | ||||| Sbjct 107130 AGAACCAGATGCAGAGTAGACTCCTTCTGGATGTTGTAGTCAGACAGAGTACGTCCGTCC 107071 Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467 || || || || ||||| ||||| || | ||| || || ||||| || || || || ||| Sbjct 107070 TCCAGCTGCTTACCAGCGAAAATGAGACGCTGCTGGTCCGGAGGAATACCCTCCTTGTCC 107011 Query 104468 TGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTC 104527 |||||||| | || || || || | |||||| || ||| ||||| || || || ||| Sbjct 107010 TGAATCTTGGACTTCACGTTGTCAATGGTATCTGAAGATTCAACCTCGAGAGTGATGGTC 106951 Query 104528 TTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || ||||| || || || ||||| |||||||| Sbjct 106950 TTGCCAGTGAGAGTCTTGACAAAGATCTGCAT 106919 Score = 91.5 bits (100), Expect = 3e-13 Identities = 124/173 (72%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || || || || || || ||||| || || | ||||| || ||||| || || Sbjct 106597 GTGGACTCCTTTTGGATGTTGTAATCAGAGAGGGTGCGGCCGTCCTCGAGTTGCTTGCCG 106538 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || ||||| || | || || || ||||| || || || || ||||||||||| | || Sbjct 106537 GCGAAAATCAGACGTTGCTGGTCCGGAGGGATGCCCTCCTTGTCCTGAATCTTGGACTTG 106478 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGT 104535 ||||| || | ||||||| | || ||||| || || |||||||| || || Sbjct 106477 ACATTGTCGATGGTATCGGATGACTCAACCTCGAGGGTGATAGTCTTGCCGGT 106425 >seq548 Length=140442 Score = 87.8 bits (96), Expect = 4e-12 Identities = 129/180 (72%), Gaps = 2/180 (1%) Strand=Plus/Plus Query 104372 TTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATT 104431 ||||| || || |||||||| ||||| | || || || || || || ||||| || || Sbjct 35074 TTCTGGATGTTGTAGTCAGACAGAGTACGGCCATCCTCAAGCTGCTTGCCAGCGAAGATC 35133 Query 104432 AGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCT 104491 || | ||| || || || || || || || || ||||||||||| | || || || || Sbjct 35134 AGACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGAATCTTGGACTTGACGTTGTCG 35193 Query 104492 ACGGTATCGCTAGG-TTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAA 104550 | || || | ||| || ||||| || ||||| |||||||| || || || || || || Sbjct 35194 ATCGTGTC-CGAGGACTCGACCTCCAGGGTAATGGTCTTACCCGTCAGGGTCTTGACGAA 35252 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151390123964188