Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Davidsoniella_20virescens_20[genbank_20GCA_5F001513805.1_202016-01-
13] 561 sequences; 33,427,969 total letters
Query= NC_005839.2
Length=131680
Score E
Sequences producing significant alignments: (Bits) Value
seq542 107 2e-18
>seq542
Length=123657
Score = 107 bits (118), Expect = 2e-18
Identities = 139/192 (72%), Gaps = 0/192 (0%)
Strand=Plus/Minus
Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTA 48594
|||||| || |||||||| |||| || || ||||||||||||||||||| || |
Sbjct 107110 CTCCTTCTGGATGTTGTAGTCAGACAGAGTACGTCCGTCCTCCAGCTGCTTACCAGCGAA 107051
Query 48595 AATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGA 48654
||| | ||||||||| ||| || | || ||||||||| ||| || ||| |
Sbjct 107050 AATGAGACGCTGCTGGTCCGGAGGAATACCCTCCTTGTCCTGAATCTTGGACTTCACGTT 106991
Query 48655 CGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCAC 48714
| |||||||| | ||| || ||||| || ||||| || || |||||||| || ||
Sbjct 106990 GTCAATGGTATCTGAAGATTCAACCTCGAGAGTGATGGTCTTGCCAGTGAGAGTCTTGAC 106931
Query 48715 AAAAATCTGCAT 48726
||| ||||||||
Sbjct 106930 AAAGATCTGCAT 106919
Score = 95.1 bits (104), Expect = 1e-14
Identities = 136/192 (71%), Gaps = 0/192 (0%)
Strand=Plus/Minus
Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTA 48594
|||||||||||||||||| || | | || ||||||||||||||||||| || |
Sbjct 107338 CTCCTTTTGAATGTTGTAGTCGGATAGGGTGCGACCGTCCTCCAGCTGCTTACCAGCGAA 107279
Query 48595 AATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGA 48654
|| | |||||| || ||| || | || ||||||||| || || ||| |
Sbjct 107278 GATGAGACGCTGTTGGTCCGGGGGAATACCCTCCTTGTCCTGGATCTTGGACTTCACGTT 107219
Query 48655 CGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCAC 48714
| ||||| |||| |||||| ||| | || ||||| || || |||||||| || ||
Sbjct 107218 GTCAATGGTGTCGGAAGACTCGACCTCAAGAGTGATGGTCTTGCCAGTGAGAGTCTTGAC 107159
Query 48715 AAAAATCTGCAT 48726
||| ||||||||
Sbjct 107158 AAAGATCTGCAT 107147
Score = 82.4 bits (90), Expect = 6e-11
Identities = 129/185 (70%), Gaps = 0/185 (0%)
Strand=Plus/Minus
Query 48518 ACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCC 48577
|| || || || ||| ||||||||| ||||||||||||| | || |||||||
Sbjct 106609 ACCAAGTGGAGAGTGGACTCCTTTTGGATGTTGTAATCAGAGAGGGTGCGGCCGTCCTCG 106550
Query 48578 AGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATA 48637
|| ||||| ||| || |||| | ||| ||||| ||| || | | ||||||||| |
Sbjct 106549 AGTTGCTTGCCGGCGAAAATCAGACGTTGCTGGTCCGGAGGGATGCCCTCCTTGTCCTGA 106490
Query 48638 ATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTA 48697
|| || ||||| | | |||||||||| ||||| ||||| || || || ||
Sbjct 106489 ATCTTGGACTTGACATTGTCGATGGTATCGGATGACTCAACCTCGAGGGTGATAGTCTTG 106430
Query 48698 CCGGT 48702
|||||
Sbjct 106429 CCGGT 106425
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 421248319826561
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |