Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Davidsoniella_20virescens_20[genbank_20GCA_5F001513805.1_202016-01- 13] 561 sequences; 33,427,969 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq542 107 2e-18 >seq542 Length=123657 Score = 107 bits (118), Expect = 2e-18 Identities = 139/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTA 48594 |||||| || |||||||| |||| || || ||||||||||||||||||| || | Sbjct 107110 CTCCTTCTGGATGTTGTAGTCAGACAGAGTACGTCCGTCCTCCAGCTGCTTACCAGCGAA 107051 Query 48595 AATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGA 48654 ||| | ||||||||| ||| || | || ||||||||| ||| || ||| | Sbjct 107050 AATGAGACGCTGCTGGTCCGGAGGAATACCCTCCTTGTCCTGAATCTTGGACTTCACGTT 106991 Query 48655 CGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCAC 48714 | |||||||| | ||| || ||||| || ||||| || || |||||||| || || Sbjct 106990 GTCAATGGTATCTGAAGATTCAACCTCGAGAGTGATGGTCTTGCCAGTGAGAGTCTTGAC 106931 Query 48715 AAAAATCTGCAT 48726 ||| |||||||| Sbjct 106930 AAAGATCTGCAT 106919 Score = 95.1 bits (104), Expect = 1e-14 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTA 48594 |||||||||||||||||| || | | || ||||||||||||||||||| || | Sbjct 107338 CTCCTTTTGAATGTTGTAGTCGGATAGGGTGCGACCGTCCTCCAGCTGCTTACCAGCGAA 107279 Query 48595 AATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGA 48654 || | |||||| || ||| || | || ||||||||| || || ||| | Sbjct 107278 GATGAGACGCTGTTGGTCCGGGGGAATACCCTCCTTGTCCTGGATCTTGGACTTCACGTT 107219 Query 48655 CGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCAC 48714 | ||||| |||| |||||| ||| | || ||||| || || |||||||| || || Sbjct 107218 GTCAATGGTGTCGGAAGACTCGACCTCAAGAGTGATGGTCTTGCCAGTGAGAGTCTTGAC 107159 Query 48715 AAAAATCTGCAT 48726 ||| |||||||| Sbjct 107158 AAAGATCTGCAT 107147 Score = 82.4 bits (90), Expect = 6e-11 Identities = 129/185 (70%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 48518 ACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCC 48577 || || || || ||| ||||||||| ||||||||||||| | || ||||||| Sbjct 106609 ACCAAGTGGAGAGTGGACTCCTTTTGGATGTTGTAATCAGAGAGGGTGCGGCCGTCCTCG 106550 Query 48578 AGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATA 48637 || ||||| ||| || |||| | ||| ||||| ||| || | | ||||||||| | Sbjct 106549 AGTTGCTTGCCGGCGAAAATCAGACGTTGCTGGTCCGGAGGGATGCCCTCCTTGTCCTGA 106490 Query 48638 ATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTA 48697 || || ||||| | | |||||||||| ||||| ||||| || || || || Sbjct 106489 ATCTTGGACTTGACATTGTCGATGGTATCGGATGACTCAACCTCGAGGGTGATAGTCTTG 106430 Query 48698 CCGGT 48702 ||||| Sbjct 106429 CCGGT 106425 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421248319826561