Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Davidsoniella_20virescens_20[genbank_20GCA_5F001513805.1_202016-01- 13] 561 sequences; 33,427,969 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq85 345 1e-89 >seq85 Length=153405 Score = 345 bits (382), Expect = 1e-89 Identities = 1065/1630 (65%), Gaps = 32/1630 (2%) Strand=Plus/Plus Query 363547 TTCACGCACGCCACGCCAACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCT 363606 ||||| |||||| |||| || | | ||| ||||| || | | | ||| | || || Sbjct 95454 TTCACACACGCCTCGCCCACGCTATTCAACGCTGGCACACCGCAGGCCCAGCTATCGTCG 95513 Query 363607 TGCTTTCTTCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAAT 363666 ||||| || | | ||||||||||| ||| || ||||||| || || || |||| | Sbjct 95514 TGCTTCCTAGTTGATATGAAGGACGACAGCATTGATGGTATCTACGATACGCTGAAGACT 95573 Query 363667 TGTGCTCTTATTTCCAAGAATGCAGGCGGAATTGGTGT-ATCGATCCACAATGTTCGTGC 363725 |||||| | || ||||||| || ||||| || ||| | | || ||||| | | ||||| Sbjct 95574 TGTGCTATGATCTCCAAGATGGCCGGCGGTATCGGTCTGAACG-TCCACCGTATCCGTGC 95632 Query 363726 -ACAGAACAGTTACATTCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTC 363784 || | || ||||| ||||| || || || || | ||||||||||| | Sbjct 95633 CACTGGCTCGT-ACATTGCTGGCACCAACGGCACGTCTAACGGCATTGTTCCCATGCTGC 95691 Query 363785 GTGTGTTTGACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGT 363844 |||| || |||| ||||| | ||||||||||||||||| |||||| || || | Sbjct 95692 GTGTCTTCAACAACACTGCCCGCTACGTCGACCAGGGTGGTAACAAGCGCCCCGGTGCCT 95751 Query 363845 TTGCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAA 363904 |||| || || || ||||| || |||||| | || ||||| ||||| || || || | Sbjct 95752 TTGCCATTTACCTGGAGCCGTGGCACGCCGATGTGTTCGAGTTCCTTGATCTGCGCAAGA 95811 Query 363905 ACACGGGAAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACC 363964 || || || ||||| | ||||| |||||||||||| ||||| ||| || | || | Sbjct 95812 ACCACGGCAAGGAGGAGATTCGTGCCCGTGATCTGTTCCTAGCACTGTGGATTCCCGATC 95871 Query 363965 ATTTTATGAAGCGCGTGGAGGCAGGTAAG--AATTGGTCACTCTTTTGCCCACACGAATG 364022 || |||||||| || || | | | | || ||| ||||| | ||||| | || || Sbjct 95872 TGTTCATGAAGCGTGTCGA--AAAGAACGCCAACTGGACACTCATGTGCCCTAATGAGTG 95929 Query 364023 TCCAGGTCTTTCCGATGTATGGGGTGACGACTATGTTGCTCTATACGAAAAGTATGA-AT 364081 || || || | ||| | || || || | | ||||| || || ||||| || | Sbjct 95930 CCCTGGACTAGCTGATTGCTACGGCGAGGAGTTCGAGGCTCTGTATGAGAAGTACGAGAG 95989 Query 364082 CGGAGGGAAAGGCTCGTAAGACAATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATT 364141 | ||| ||| ||| || || || |||||||| |||| ||||| | || Sbjct 95990 TGAAGGCCGTGGC-CGTCTTACCATCAAGGCCCAGAAGCTGTGGTACGCCATTCTCGAGG 96048 Query 364142 CGCAGATTGAGACAGGAACACCCTATATGTTGTACAAAGATTCGTGCAACCGCAAGTCCA 364201 | |||| ||||| || | || | ||| ||||||| || | |||||| ||| || Sbjct 96049 CCCAGACCGAGACCGGCAACCCATTCATGCTGTACAAGGACGCCTGCAACAAGAAGAGCA 96108 Query 364202 ACCAGCAGCACCTTGGTACAATTCAGCAG-AGCAACCTATGTACCGAGATTATTGAATAC 364260 ||||| | |||| || || | || |||| ||| ||||| || || || || || ||| Sbjct 96109 ACCAGAAAAACCTAGGCACTA-TCCGCAGCTCCAATCTATGCACTGAAATCATCGAGTAC 96167 Query 364261 ACCGCTCCCGACGAGACTGCCGTATGTAACCTTGCGTCGATCGCGCTTCCGGCGTTTGT- 364319 ||||||||| ||| ||||||||| ||||| || ||| | || || || | ||||| Sbjct 96168 TGCGCTCCCGATGAGGTTGCCGTATGCAACCTAGCCTCGCTAGCCCTACCATCCTTTGTC 96227 Query 364320 ---------AAAAGATGGTACTTTTGACCACCAGCATCTTTATGACGTAACCTATCATGC 364370 ||| || |||| || |||| | || | || | ||| | || Sbjct 96228 GACTACAACAAAGGAGAGTAC----GATTTCCAGAAGCTGCACGAGATCACC-AAGGTGG 96282 Query 364371 TACTTGC--AATCTCGACAAGGTTATCGACAAGAATTATTATCCAATTCCTGAAGCCGAG 364428 | | ||| || || | ||||||| || | || || | ||||| || | Sbjct 96283 T-CGTGCGTAACCTGAATCGCATTATCGATGTCAACCACTACCCTGTGCCTGAGGCTCAC 96341 Query 364429 CGTTCTAATATGCGTCATCGCCCGATTGGTCTTGGTGTACAGGGCCTCGCTGACGTTTTT 364488 || |||||||||||||| |||||| ||||||| ||||| || || || | ||| Sbjct 96342 AACAGCAACATGCGTCATCGCCCCATTGGTGTTGGTGTCCAGGGTCTAGCCGATGCTTTC 96401 Query 364489 ATGATGCTCAAGATGGCATTTGATTCGCCTGACGCTCGTGTTCTAAATAAGGAGATCTTT 364548 | || ||| | || || || | || || || ||| || ||| ||||||| Sbjct 96402 CTAGCCCTACGCATGCCTTTCGAGTCTGCCGAGGCCCGCACTCTGAACAAGCAGATCTTC 96461 Query 364549 GAAACAATGTATTTTGCCGCAATGACTGCTTCGTGTGATTTGGCAAAAACCAAGGGAAAG 364608 || || || || || || ||||||| ||||| || | || ||||| |||| | Sbjct 96462 GAGACCATCTACCACGCTGCCCTGACTGCCTCGTGCGAGATTGCTCAAACCGAGGGTACT 96521 Query 364609 TACTCTACTTATGAGGGGTCCCCTCTTTCGCAGGGAAAATTCCAGTTTGATCTATGGAAT 364668 ||||| || |||||||| || ||| | || ||||| | | ||||| || | ||||| Sbjct 96522 TACTCCACCTATGAGGGTTCGCCTGTATCTCAGGGTATCCTGCAGTTCGACATGTGGAAC 96581 Query 364669 GTCACGCCATCTGTCCGATGGAACTGGGATACGCT-ACGTTCCAACGTTAAGAAGCATGG 364727 || || || || || ||| |||||| |||| | | | | | ||| |||| || Sbjct 96582 GTTACCCCTAGTGACCTGTGGGACTGGGCCTCGCTCAAGGAAC-AGATCAAGCAGCACGG 96640 Query 364728 TACTCGCAACTCCCTCGTTACAGCGCCCATGCCCACGGCTTCTACTGCACAGATCCTCGG 364787 |||||||| || | || || ||||| || || || || | |||||||| || Sbjct 96641 CGTGCGCAACTCGCTACTCCTGGCTCCTATGCCAACTGCCTCGACCTCTCAGATCCTAGG 96700 Query 364788 AAACAACGAGTGCTTCGAACCGTTTACAAGCAATCTTTATTCACGCCGGGTTCTTTCCGG 364847 ||||||||||||||||| || | || || | || ||||| || || | || Sbjct 96701 CAACAACGAGTGCTTCGAGCCTTACACCTCGAACATCTACCAGCGCCGTGTGCTGGCTGG 96760 Query 364848 AGAATTTCCGGTAGTTAATAAGTACCTAGTCAAGGATCTTTCCGACCGCGGGCTGTGGGG 364907 || || | ||| ||||| | | | || || ||| | || |||||| Sbjct 96761 TGAGTTCCAGGTTGTTAACCCCTGGTTGCTGCGTGACCTGGTCGATCTTGGCCTGTGGTC 96820 Query 364908 TGACAGCATGAAGAACTATATCATCGCCGCTAATGGTTCTGTGCAGAACATTCCAGGATT 364967 |||| |||||||||| |||||| || | ||| ||||| || || ||||| || | Sbjct 96821 CGACACCATGAAGAACCGTATCATTGCGGATAACGGTTCGGTCCAAAACATCCCTAATAT 96880 Query 364968 TCCAGAAGATCTGAAGCCTATTTACAAAACCGTATGGGAAATTTCCATGCGAACTCTCAT 365027 || | || | ||| | | ||||| ||||| ||||| ||||| ||| || | | Sbjct 96881 CCCCGCCGACATCAAGGCCCTGTACAAGACCGTCTGGGAGATTTCTCAGCGTACCGTTGT 96940 Query 365028 TGATATGGCGGCCGATCGCGGTGCTTTTATCTGTCAGAGCCAGTCGTTTAACGTATTCAT 365087 | ||||| |||||||| || ||||| ||| ||| |||||| | ||| | ||| Sbjct 96941 GCAGATGGCTGCCGATCGTGGCGCTTTCATCGACCAGTCGCAGTCGCTGAACATTCACAT 97000 Query 365088 GACTCAGCCAACCTCCGCCAAGCTTACATCCATGCATTTCTACGGGTGGAAATCCGGTCT 365147 || | || || | ||| | || |||||| || ||| ||||| |||||| Sbjct 97001 GAAGGACCCTACTATGGGTAAGATCACCAGCATGCACTTTGCCGGCTGGAAGCTCGGTCT 97060 Query 365148 TAAGACAGGT 365157 ||||| ||| Sbjct 97061 CAAGACCGGT 97070 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303344231738702