Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Davidsoniella_20virescens_20[genbank_20GCA_5F001513805.1_202016-01- 13] 561 sequences; 33,427,969 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq134 131 1e-25 seq277 118 7e-22 seq542 89.7 3e-13 >seq134 Length=8570 Score = 131 bits (144), Expect = 1e-25 Identities = 86/95 (91%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||||||||||| |||||||||| || |||||||| Sbjct 6144 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATGGTAGATAGGGACAGTGGGAATCTCGT 6085 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| |||||||||||||||||||||||||||| Sbjct 6084 TGATCCATTCATGCGCGTCACTAATTAGATGACGA 6050 >seq277 Length=489393 Score = 118 bits (130), Expect = 7e-22 Identities = 234/344 (68%), Gaps = 8/344 (2%) Strand=Plus/Plus Query 6200 GTTCTACCGCTACAAAATGCCGCGCATCTGCGCCAAGGTCGAGGGTAAGGGAAACGGTAT 6259 ||||||||| ||||| ||||| || || |||| | ||||||||||| |||||||| Sbjct 449822 GTTCTACCGTTACAAGATGCCCCGTCTCCAAACCAAAATTGAGGGTAAGGGTAACGGTAT 449881 Query 6260 TAAAACCGTCATTGTCAACATGCCTGAAGTCGCTAAGGCGCTCGGACGCCCTGCCACCTA 6319 || || ||||||||||| || ||| ||||| || |||| | ||||||| | | Sbjct 449882 CAAGACTGTCATTGTCAATCTGTCTGCCGTCGCCCAGTCGCTGGCTCGCCCTGGTGCTCA 449941 Query 6320 CCCGACGAAATATTTCGGGTGCGAACTTGGCGCTCAGACGCAGTTTGATCACAAAAACGA 6379 || || || || || || | ||| || || |||||||| | |||| | | || Sbjct 449942 CCTGATCAAGTACTTTGGCTTCGAGCTGGGTGCTCAGACCAACATTGACCCTCCGGATGA 450001 Query 6380 GCGCTTCATCGTTAACGGATCGCATAACTCTGCCAAGCTGCAGGACTTAC-TTGACGGCT 6438 || | ||| | ||||| ||||| || || ||||||||||| | || | |||||| Sbjct 450002 CCGTTGGATCATCAACGGCTCGCACGACACTAAGAAGCTGCAGGA-TCACGTCTACGGCT 450060 Query 6439 TTATTCGCAAGTTTGTGCTGTGTCGGGAATGCGATAACCCGGAGACCGAGCTTATTGTGT 6498 | ||| |||||| || || || | | ||| | ||||| ||||| | |||| Sbjct 450061 TCATTGTCAAGTTCGTTCTCTGCAAGAAGTGCAAGAACCCCGAGAC------TGTTGTAA 450114 Query 6499 CTACCAAGAGAAACACCATCTCTCAGGGCTGCAAAGCGTGCGGT 6542 || |||| || |||| || || |||||| || |||||| Sbjct 450115 TTATCAAGGACGACCACATCATTCTGGACTGCAAGGCCTGCGGT 450158 >seq542 Length=123657 Score = 89.7 bits (98), Expect = 3e-13 Identities = 121/169 (72%), Gaps = 0/169 (0%) Strand=Plus/Minus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||| | || ||| | ||||| || |||||| ||||||||| || |||||||||| Sbjct 106629 TACCACCACGCAGACGGAGGACCAAGTGGAGAGTGGACTCCTTTTGGATGTTGTAATCAG 106570 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 | | || |||| || | ||| || ||||| || || || ||||| || || | | Sbjct 106569 AGAGGGTGCGGCCGTCCTCGAGTTGCTTGCCGGCGAAAATCAGACGTTGCTGGTCCGGAG 106510 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATC 38257 ||| ||| || |||||| ||| || ||| ||||| | || ||||| Sbjct 106509 GGATGCCCTCCTTGTCCTGAATCTTGGACTTGACATTGTCGATGGTATC 106461 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334944909903191