Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Davidsoniella_20virescens_20[genbank_20GCA_5F001513805.1_202016-01-
13] 561 sequences; 33,427,969 total letters
Query= NC_008168.1
Length=104710
Score E
Sequences producing significant alignments: (Bits) Value
seq134 131 1e-25
seq277 118 7e-22
seq542 89.7 3e-13
>seq134
Length=8570
Score = 131 bits (144), Expect = 1e-25
Identities = 86/95 (91%), Gaps = 5/95 (5%)
Strand=Plus/Minus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
||||||||||||||||||||||||||||||||| |||||||||| || ||||||||
Sbjct 6144 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATGGTAGATAGGGACAGTGGGAATCTCGT 6085
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
| |||| ||||||||||||||||||||||||||||
Sbjct 6084 TGATCCATTCATGCGCGTCACTAATTAGATGACGA 6050
>seq277
Length=489393
Score = 118 bits (130), Expect = 7e-22
Identities = 234/344 (68%), Gaps = 8/344 (2%)
Strand=Plus/Plus
Query 6200 GTTCTACCGCTACAAAATGCCGCGCATCTGCGCCAAGGTCGAGGGTAAGGGAAACGGTAT 6259
||||||||| ||||| ||||| || || |||| | ||||||||||| ||||||||
Sbjct 449822 GTTCTACCGTTACAAGATGCCCCGTCTCCAAACCAAAATTGAGGGTAAGGGTAACGGTAT 449881
Query 6260 TAAAACCGTCATTGTCAACATGCCTGAAGTCGCTAAGGCGCTCGGACGCCCTGCCACCTA 6319
|| || ||||||||||| || ||| ||||| || |||| | ||||||| | |
Sbjct 449882 CAAGACTGTCATTGTCAATCTGTCTGCCGTCGCCCAGTCGCTGGCTCGCCCTGGTGCTCA 449941
Query 6320 CCCGACGAAATATTTCGGGTGCGAACTTGGCGCTCAGACGCAGTTTGATCACAAAAACGA 6379
|| || || || || || | ||| || || |||||||| | |||| | | ||
Sbjct 449942 CCTGATCAAGTACTTTGGCTTCGAGCTGGGTGCTCAGACCAACATTGACCCTCCGGATGA 450001
Query 6380 GCGCTTCATCGTTAACGGATCGCATAACTCTGCCAAGCTGCAGGACTTAC-TTGACGGCT 6438
|| | ||| | ||||| ||||| || || ||||||||||| | || | ||||||
Sbjct 450002 CCGTTGGATCATCAACGGCTCGCACGACACTAAGAAGCTGCAGGA-TCACGTCTACGGCT 450060
Query 6439 TTATTCGCAAGTTTGTGCTGTGTCGGGAATGCGATAACCCGGAGACCGAGCTTATTGTGT 6498
| ||| |||||| || || || | | ||| | ||||| ||||| | ||||
Sbjct 450061 TCATTGTCAAGTTCGTTCTCTGCAAGAAGTGCAAGAACCCCGAGAC------TGTTGTAA 450114
Query 6499 CTACCAAGAGAAACACCATCTCTCAGGGCTGCAAAGCGTGCGGT 6542
|| |||| || |||| || || |||||| || ||||||
Sbjct 450115 TTATCAAGGACGACCACATCATTCTGGACTGCAAGGCCTGCGGT 450158
>seq542
Length=123657
Score = 89.7 bits (98), Expect = 3e-13
Identities = 121/169 (72%), Gaps = 0/169 (0%)
Strand=Plus/Minus
Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148
||||||| | || ||| | ||||| || |||||| ||||||||| || ||||||||||
Sbjct 106629 TACCACCACGCAGACGGAGGACCAAGTGGAGAGTGGACTCCTTTTGGATGTTGTAATCAG 106570
Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208
| | || |||| || | ||| || ||||| || || || ||||| || || | |
Sbjct 106569 AGAGGGTGCGGCCGTCCTCGAGTTGCTTGCCGGCGAAAATCAGACGTTGCTGGTCCGGAG 106510
Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATC 38257
||| ||| || |||||| ||| || ||| ||||| | || |||||
Sbjct 106509 GGATGCCCTCCTTGTCCTGAATCTTGGACTTGACATTGTCGATGGTATC 106461
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 334944909903191
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |