Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Davidsoniella_20virescens_20[genbank_20GCA_5F001513805.1_202016-01-
13] 561 sequences; 33,427,969 total letters
Query= NC_008586.1
Length=131204
Score E
Sequences producing significant alignments: (Bits) Value
seq542 134 1e-26
seq85 95.1 1e-14
>seq542
Length=123657
Score = 134 bits (148), Expect = 1e-26
Identities = 166/227 (73%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
||||| || ||||| || ||| | || || || || |||||||||| || || | ||
Sbjct 107147 ATGCAGATCTTTGTCAAGACTCTCACTGGCAAGACCATCACTCTTGAGGTCGAGTCTTCC 107206
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
|| ||| | ||| | | || || || || ||||||||||||||||| || || |||
Sbjct 107207 GACACCATTGACAACGTGAAGTCCAAGATCCAGGACAAGGAGGGTATTCCCCCGGACCAA 107266
Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398
|| ||||| || || || || || ||| | ||||| |||||| | ||||| ||||||
Sbjct 107267 CAGCGTCTCATCTTCGCTGGTAAGCAGCTGGAGGACGGTCGCACCCTATCCGACTACAAC 107326
Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445
|||||||| || || ||| ||||| | ||| |||| |||| || ||
Sbjct 107327 ATTCAAAAGGAGTCGACCCTACATCTGGTTCTGCGTCTGCGTGGTGG 107373
Score = 123 bits (136), Expect = 2e-23
Identities = 151/206 (73%), Gaps = 0/206 (0%)
Strand=Plus/Plus
Query 22241 TAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAAC 22300
||||||| || || |||| || || || || | |||||||| | ||| || ||||
Sbjct 106423 TAACCGGCAAGACTATCACCCTCGAGGTTGAGTCATCCGATACCATCGACAATGTCAAGT 106482
Query 22301 AAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCA 22360
|| ||||| ||||||||||| || || || || || |||||||| || || |||||||
Sbjct 106483 CCAAGATTCAGGACAAGGAGGGCATCCCTCCGGACCAGCAACGTCTGATTTTCGCCGGCA 106542
Query 22361 AACAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATAC 22420
| || | ||||| ||||||| |||| ||||||||||| ||||| || ||||| | |
Sbjct 106543 AGCAACTCGAGGACGGCCGCACCCTCTCTGATTACAACATCCAAAAGGAGTCCACTCTCC 106602
Query 22421 ATTTAGTTTTGCGATTGCGCGGAGGT 22446
| || || | || |||| || |||
Sbjct 106603 ACTTGGTCCTCCGTCTGCGTGGTGGT 106628
Score = 105 bits (116), Expect = 6e-18
Identities = 160/228 (70%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
||||| || ||||| || ||| | || || || || ||||||| || || ||| | |
Sbjct 106919 ATGCAGATCTTTGTCAAGACTCTCACTGGCAAGACCATCACTCTCGAGGTTGAATCTTCA 106978
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
|||||| | ||| | | || || ||||| ||||||||||||||||| || || ||
Sbjct 106979 GATACCATTGACAACGTGAAGTCCAAGATTCAGGACAAGGAGGGTATTCCTCCGGACCAG 107038
Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398
|| ||||| || || || || || ||| | ||||| || || | || || ||||||
Sbjct 107039 CAGCGTCTCATTTTCGCTGGTAAGCAGCTGGAGGACGGACGTACTCTGTCTGACTACAAC 107098
Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446
|| || || || || || | ||| | ||| |||| |||| || |||
Sbjct 107099 ATCCAGAAGGAGTCTACTCTGCATCTGGTTCTGCGTCTGCGTGGTGGT 107146
>seq85
Length=153405
Score = 95.1 bits (104), Expect = 1e-14
Identities = 250/381 (66%), Gaps = 3/381 (1%)
Strand=Plus/Minus
Query 130014 TTCGACTCGTTTCATAAACAAATCGGGTACCCACAGGGCGTACAACAAATCTCGCGCTTT 130073
|||||| || ||||| |||| |||||| | |||||| || |||| ||| || ||
Sbjct 95891 TTCGACACGCTTCATGAACAGATCGGGAATCCACAGTGCTAGGAACAGATCACGGGCACG 95832
Query 130074 TCTATCCTCGGCACCCATGTTACGTTTCAGTTCAAGGAAATCGTAAATGTCGGCGTGCCA 130133
| ||||| || ||| ||| |||||||| ||| | | |||||||||||
Sbjct 95831 AATCTCCTCCTTGCCGTGGTTCTTGCGCAGATCAAGGAACTCGAACACATCGGCGTGCCA 95772
Query 130134 CGGTTCAACATAAATTGCCATTGCGCCCTTCCGTTTG---CCCCCTTGGTCAACGTGGCG 130190
||| || | ||||| || | || || || ||| || || ||||| |||| |||
Sbjct 95771 CGGCTCCAGGTAAATGGCAAAGGCACCGGGGCGCTTGTTACCACCCTGGTCGACGTAGCG 95712
Query 130191 CACGGCATTGTTGTAGACTCGCAACATTGCCTCCAATCCGTTGGCCGTGCCGTTTGTGCT 130250
| | |||||| |||| |||| ||| | | | ||||| | ||||||||| ||||
Sbjct 95711 GGCAGTGTTGTTGAAGACACGCAGCATGGGAACAATGCCGTTAGACGTGCCGTTGGTGCC 95652
Query 130251 CTCAATGAAACTGCCACGAGCCCGAACGTTATGAACGCTTAGACCTATGCCGCCGCCAAA 130310
||||| | |||| || || | || ||| | ||||| || |||||| | |
Sbjct 95651 AGCAATGTACGAGCCAGTGGCACGGATACGGTGGACGTTCAGACCGATACCGCCGGCCAT 95592
Query 130311 TTTTGATATCAACGCGCAATCGCGTAGCGTTTCATAAATGCCAACGATACTGTCTTCTTT 130370
|| || |||| || ||| ||||| || || || ||| | || ||||| || ||
Sbjct 95591 CTTGGAGATCATAGCACAAGTCTTCAGCGTATCGTAGATACCATCAATGCTGTCGTCCTT 95532
Query 130371 AATGTTTAGGAGGAAACACGA 130391
|| | | ||||| |||||
Sbjct 95531 CATATCAACTAGGAAGCACGA 95511
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 419725130240965
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |