Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Davidsoniella_20virescens_20[genbank_20GCA_5F001513805.1_202016-01- 13] 561 sequences; 33,427,969 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq542 134 1e-26 seq85 95.1 1e-14 >seq542 Length=123657 Score = 134 bits (148), Expect = 1e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| || ||| | || || || || |||||||||| || || | || Sbjct 107147 ATGCAGATCTTTGTCAAGACTCTCACTGGCAAGACCATCACTCTTGAGGTCGAGTCTTCC 107206 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | ||| | | || || || || ||||||||||||||||| || || ||| Sbjct 107207 GACACCATTGACAACGTGAAGTCCAAGATCCAGGACAAGGAGGGTATTCCCCCGGACCAA 107266 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||||| || || || || || ||| | ||||| |||||| | ||||| |||||| Sbjct 107267 CAGCGTCTCATCTTCGCTGGTAAGCAGCTGGAGGACGGTCGCACCCTATCCGACTACAAC 107326 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 |||||||| || || ||| ||||| | ||| |||| |||| || || Sbjct 107327 ATTCAAAAGGAGTCGACCCTACATCTGGTTCTGCGTCTGCGTGGTGG 107373 Score = 123 bits (136), Expect = 2e-23 Identities = 151/206 (73%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 22241 TAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAAC 22300 ||||||| || || |||| || || || || | |||||||| | ||| || |||| Sbjct 106423 TAACCGGCAAGACTATCACCCTCGAGGTTGAGTCATCCGATACCATCGACAATGTCAAGT 106482 Query 22301 AAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCA 22360 || ||||| ||||||||||| || || || || || |||||||| || || ||||||| Sbjct 106483 CCAAGATTCAGGACAAGGAGGGCATCCCTCCGGACCAGCAACGTCTGATTTTCGCCGGCA 106542 Query 22361 AACAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATAC 22420 | || | ||||| ||||||| |||| ||||||||||| ||||| || ||||| | | Sbjct 106543 AGCAACTCGAGGACGGCCGCACCCTCTCTGATTACAACATCCAAAAGGAGTCCACTCTCC 106602 Query 22421 ATTTAGTTTTGCGATTGCGCGGAGGT 22446 | || || | || |||| || ||| Sbjct 106603 ACTTGGTCCTCCGTCTGCGTGGTGGT 106628 Score = 105 bits (116), Expect = 6e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| || ||| | || || || || ||||||| || || ||| | | Sbjct 106919 ATGCAGATCTTTGTCAAGACTCTCACTGGCAAGACCATCACTCTCGAGGTTGAATCTTCA 106978 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | ||| | | || || ||||| ||||||||||||||||| || || || Sbjct 106979 GATACCATTGACAACGTGAAGTCCAAGATTCAGGACAAGGAGGGTATTCCTCCGGACCAG 107038 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||||| || || || || || ||| | ||||| || || | || || |||||| Sbjct 107039 CAGCGTCTCATTTTCGCTGGTAAGCAGCTGGAGGACGGACGTACTCTGTCTGACTACAAC 107098 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || || || || || || | ||| | ||| |||| |||| || ||| Sbjct 107099 ATCCAGAAGGAGTCTACTCTGCATCTGGTTCTGCGTCTGCGTGGTGGT 107146 >seq85 Length=153405 Score = 95.1 bits (104), Expect = 1e-14 Identities = 250/381 (66%), Gaps = 3/381 (1%) Strand=Plus/Minus Query 130014 TTCGACTCGTTTCATAAACAAATCGGGTACCCACAGGGCGTACAACAAATCTCGCGCTTT 130073 |||||| || ||||| |||| |||||| | |||||| || |||| ||| || || Sbjct 95891 TTCGACACGCTTCATGAACAGATCGGGAATCCACAGTGCTAGGAACAGATCACGGGCACG 95832 Query 130074 TCTATCCTCGGCACCCATGTTACGTTTCAGTTCAAGGAAATCGTAAATGTCGGCGTGCCA 130133 | ||||| || ||| ||| |||||||| ||| | | ||||||||||| Sbjct 95831 AATCTCCTCCTTGCCGTGGTTCTTGCGCAGATCAAGGAACTCGAACACATCGGCGTGCCA 95772 Query 130134 CGGTTCAACATAAATTGCCATTGCGCCCTTCCGTTTG---CCCCCTTGGTCAACGTGGCG 130190 ||| || | ||||| || | || || || ||| || || ||||| |||| ||| Sbjct 95771 CGGCTCCAGGTAAATGGCAAAGGCACCGGGGCGCTTGTTACCACCCTGGTCGACGTAGCG 95712 Query 130191 CACGGCATTGTTGTAGACTCGCAACATTGCCTCCAATCCGTTGGCCGTGCCGTTTGTGCT 130250 | | |||||| |||| |||| ||| | | | ||||| | ||||||||| |||| Sbjct 95711 GGCAGTGTTGTTGAAGACACGCAGCATGGGAACAATGCCGTTAGACGTGCCGTTGGTGCC 95652 Query 130251 CTCAATGAAACTGCCACGAGCCCGAACGTTATGAACGCTTAGACCTATGCCGCCGCCAAA 130310 ||||| | |||| || || | || ||| | ||||| || |||||| | | Sbjct 95651 AGCAATGTACGAGCCAGTGGCACGGATACGGTGGACGTTCAGACCGATACCGCCGGCCAT 95592 Query 130311 TTTTGATATCAACGCGCAATCGCGTAGCGTTTCATAAATGCCAACGATACTGTCTTCTTT 130370 || || |||| || ||| ||||| || || || ||| | || ||||| || || Sbjct 95591 CTTGGAGATCATAGCACAAGTCTTCAGCGTATCGTAGATACCATCAATGCTGTCGTCCTT 95532 Query 130371 AATGTTTAGGAGGAAACACGA 130391 || | | ||||| ||||| Sbjct 95531 CATATCAACTAGGAAGCACGA 95511 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419725130240965