Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Davidsoniella_20virescens_20[genbank_20GCA_5F001513805.1_202016-01-
13] 561 sequences; 33,427,969 total letters
Query= NC_008603.1
Length=321240
Score E
Sequences producing significant alignments: (Bits) Value
seq7 150 4e-31
seq543 107 4e-18
seq121 93.3 9e-14
>seq7
Length=77910
Score = 150 bits (166), Expect = 4e-31
Identities = 281/406 (69%), Gaps = 14/406 (3%)
Strand=Plus/Minus
Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622
|| ||||| || | |||||| ||||||| || ||||||||||||||||||||||||
Sbjct 73350 TCAAAGAAGTTGGTCTTGCCTCCCAGAGAAATGTTCTCCATGAAGTCGAAGGGGTTTGTA 73291
Query 251623 GCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGA 251682
||| |||| ||| | |||||| || || | || ||||| || || ||||| |
Sbjct 73290 GCACGGTACACTTTGTCGTTGCCAAGGGCAACCAGGAGACGGTCAGCAACGAACTCAATG 73231
Query 251683 TACTGTCCCATCAGTTCAGAGTTCATGCCAATCATACGACAAGGAATTGCCTCACAGATG 251742
||||| |||||| || | ||||||||| | || || ||||||| |||||| | |
Sbjct 73230 TACTGCTTCATCAGATCGGCGTTCATGCCTAGCAGACCGCAAGGAAGAGCCTCAGTTAAG 73171
Query 251743 AATTCCTTTTCGTTGGCAACTGCCTCCTCCACAATTGCCTTCACCTG-----TGCCAGAG 251797
|| ||||| ||| || |||| || || | ||| | ||| | ||| || |
Sbjct 73170 AACTCCTTCTCGATGACAACAGCATCAGTGATAATCTTTTCGACCAGTTCCTTGCTAG-G 73112
Query 251798 ACAGCTTGTTCTCCAGCTTTGAGTAC-AGGAGCTCGCCAAA-CTGTTGGTGCAGACCCTC 251855
|| | ||||| || | ||| || | ||| || ||| |||| ||||| ||||||
Sbjct 73111 AC-GGTTGTT---CAAGTGCGAGAACAACAAGCAAGCAAAATCTGT--GTGCAAACCCTC 73058
Query 251856 GTCGCGACTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCCACGGTTCCTGAG 251915
|| || ||| | |||||| || | ||| |||||||||| ||||| || | ||
Sbjct 73057 ATCACGGGAGATAAGCTCGTTAGAGAAGGTCAGACCAGGCATCAGACCACGCTTACGTAG 72998
Query 251916 CCAGAAGATTGCGCAAAAGGATCCAGAGAACAGCAGACCCTCGACA 251961
||||||||| | ||||| |||||||| | | ||||||||||
Sbjct 72997 CCAGAAGATAGAAGCAAAGGCACCAGAGAAGAAGATACCCTCGACA 72952
>seq543
Length=133180
Score = 107 bits (118), Expect = 4e-18
Identities = 171/243 (70%), Gaps = 2/243 (1%)
Strand=Plus/Plus
Query 279324 GCAGAGAAGGAGACTGAGCCAGGTGAGGATCTGTGTGACTGTGATTTCTCGCTCGCATAT 279383
|| ||| |||| |||| ||| ||||||||||| |||| |||||| || || ||
Sbjct 104674 GCTGAGGAGGACGATGAGGAAGGCGAGGATCTGTGCAACTGCACTTTCTCTCTTGCCTAC 104733
Query 279384 GGTGGGAAGATTCTGCTAAACTCTACCCGCCTCAACATCAAGCGTGGCAACCGGTATGGT 279443
|||| |||||||| || ||| || | |||| |||||||||| | || || |||
Sbjct 104734 GGTGCCAAGATTCTTCTTAACCAGACTCACCTCCGTCTCAAGCGTGGTCAGCGCTACGGT 104793
Query 279444 CTCATCGGTCCCAATGGAGCGGGTAAGAGCACTCTAATGCGCGCCATTGCAAACGGTCAG 279503
|| |||||||||||| | || ||| || || ||||| ||||| |||| |||
Sbjct 104794 CTTTGCGGTCCCAATGGTTCCGGCAAGTCTACCCTCATGCGTGCCATCAACAACGAGCAG 104853
Query 279504 CTGGAAGGATTTCCTAACGCA-TCTGAGGTAAGGACAGTGTATGTAGAGCACGACATCGA 279562
| | ||| ||||| | ||| ||||| || | ||| || | || ||||||||| | ||
Sbjct 104854 GTCG-AGGGTTTCCCCAAGCAGTCTGAAGTCAAGACTGTCTTCGTCGAGCACGACCTGGA 104912
Query 279563 CTC 279565
|||
Sbjct 104913 CTC 104915
Score = 104 bits (114), Expect = 5e-17
Identities = 458/707 (65%), Gaps = 45/707 (6%)
Strand=Plus/Plus
Query 279705 CTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTGCGTGCCGAT 279764
|| || ||||||||||||||||||||||| || || ||| | | | | |||||
Sbjct 105058 CTCTCTGGTGGTTGGAAGATGAAGCTGGCTCTGTGCCGTGCCGTCTTTGAGGCTCCCGAT 105117
Query 279765 GTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGCCTGGCTAGTG 279824
|||| || || |||||||| |||||||| |||| | ||||| ||||||| |
Sbjct 105118 ATCCTGCTTCTGGATGAGCCTACCAACCATCTGGATGTGAAGAACGTCAAGTGGCTAGAG 105177
Query 279825 TCCTACCTAACCAGT-CTGAAGAATGTTTCTTCCCTCATTGTCTCTCACGACTCTGGCTT 279883
|||||| |||| || || ||||| |||||||||||||||||||||| ||
Sbjct 105178 GACTACCTGTGCAGTTCTCCT---TGCA-CTTCCATCATTGTCTCTCACGACTCTGGTTT 105233
Query 279884 CCTAGATGCCGTGTGCTCTGCCATCATTCACTATGAGCAAAATCTGAAGCTCTCCAAGC- 279942
||| || || ||| ||| ||||||| |||| | ||||| |||||
Sbjct 105234 CCTCGACAATGTCTGCCAACATATCGTTCACTACGAGC---GCTTCAAGCT---CAAGCG 105287
Query 279943 --ACATCGGCAACCTGTCTGCTTTCGTGGCAAAGCGCCCTGAGGCGGCCGCCTACTATGA 280000
|| || |||||| | | ||||| ||| |||| || ||||||| ||
Sbjct 105288 TTACCGTGGTAACCTGGCCGAGTTCGTCAAGAAGTGCCCCTCAGCCAAGTCCTACTACGA 105347
Query 280001 CCTGAAGGACGCCACCGCCA---AGTGGGAATTCCCTGAGCCAGGGTTTCTGGAGGGCAT 280057
|| | ||| ||| | ||| ||||| ||||| || || || ||||| |
Sbjct 105348 ACT---CGGTGCCTCCGAGATGGAGTTCACCTTCCCCGAGCCCGGTTTCCTTGAGGGTGT 105404
Query 280058 CACATCAAAGGATCGCGCAA----TCATG-AAGCTCCGTGGCGTCTCCTTTGC----TTA 280108
|| | |||| || | || || | | | || | | ||| | | ||
Sbjct 105405 CAAGACCAAGGCCAAGGCCATTCTTCGTGCCACCAACATGACCT-TCCAGTACCCTGGTA 105463
Query 280109 TC-CCAATGGCCCCAACATCTTCAGCAGTGTCAACTCGCAGGTTTCTATGAACTCACGGA 280167
| |||| ||||| | || | || || || || ||| || ||| ||| || |
Sbjct 105464 CCACCAA--GCCCC-AGATTTCCAACA---TCTCCTTCCAGTGCTCGCTGAGCTCTCGTA 105517
Query 280168 TTGGTGTCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTGGCG 280227
||| ||||| || ||||| ||||| |||||||| || || ||||| ||||||||||| |
Sbjct 105518 TTGCCGTCATCGGTCCCAACGGTGCCGGTAAGTCGACTCTGATCAACGTCCTGACTGGTG 105577
Query 280228 AGACCCAGG---CCACTGAGGGGTCCGTTTGGAAGCATCCCAACATGCGGATGGCTTACG 280284
|| | || ||||| || ||| |||| ||||| || || || |||
Sbjct 105578 AG---CTGGTTCCCACTCTCGGTGAGATTTACCAGCACGAGAACATCCGTATTGCCTACA 105634
Query 280285 TCGCTCAGCACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCAATACA 280344
|| |||||||||||| ||||||||| |||||||||||| ||| || | | ||||
Sbjct 105635 TCAAGCAGCACGCTTTCGCCCACATCGATCACCACCTGGACAAGACCCCCTCCGAGTACA 105694
Query 280345 TTCAGTGGCGCTATGCA-AGTGGGCAGGATCTGGAGTCGGTGGATCG 280390
| |||||||| | | || | ||| |||||| ||| | |||| ||
Sbjct 105695 TCCAGTGGCG-TTTCCAGACTGGTGAGGATCGTGAGACCATGGACCG 105740
Score = 95.1 bits (104), Expect = 2e-14
Identities = 134/186 (72%), Gaps = 2/186 (1%)
Strand=Plus/Plus
Query 280702 CTCACTCTCGCATTCGCGGTCTTTCTGGAGGCCAGAAGGTCAAACTTGTCATCGGAGCA- 280760
||||||||||||| ||||| ||||| || ||| ||||| | ||| | | ||
Sbjct 106097 CTCACTCTCGCATGAAGGGTCTGTCTGGTGGTCAGCGTGTCAAGGTCGTCCTAGCTGCCT 106156
Query 280761 GCTCTGTGGCAACACCCTCACGTGATCGTTCTCGACGAGCCTACCAACTATCTGGACCGC 280820
|||| ||||||| ||| ||| |||||||||| ||||||||||||||||||||||| ||
Sbjct 106157 GCTCA-TGGCAACGCCCCCACTTGATCGTTCTTGACGAGCCTACCAACTATCTGGATCGT 106215
Query 280821 GAGAGCCTGGGCGCTCTGAGTGCTGCTCTGGACACATTTGGCGGCGGCGTCGTAGTCATT 280880
|| || || |||||| |||||| || || | || || ||| | |||||
Sbjct 106216 GACTCTCTAGGTGCTCTGTCCAAGGCTCTGCGCAAGTTCGAGGGTGGTGTCATCATCATT 106275
Query 280881 TCTCAC 280886
|||||
Sbjct 106276 ACTCAC 106281
>seq121
Length=136078
Score = 93.3 bits (102), Expect = 9e-14
Identities = 158/229 (69%), Gaps = 0/229 (0%)
Strand=Plus/Minus
Query 279692 GCCAGTAGGTTCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCT 279751
||| || ||||||||||| ||||||||||||||||||||||| || |||| || || ||
Sbjct 133175 GCCCGTTGGTTCTCTGTCTGGTGGTTGGAAGATGAAGCTGGCTCTTGCTCGTGCTATGCT 133116
Query 279752 ACTGCGTGCCGATGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGT 279811
| || ||||| || || ||||| || || || |||||| |||| |||| ||
Sbjct 133115 GCAAAAGGCTGATGTTCTCCTACTTGACGAACCTACTAACCACCTGGATGTTGCCAATGT 133056
Query 279812 AGCCTGGCTAGTGTCCTACCTAACCAGTCTGAAGAATGTTTCTTCCCTCATTGTCTCTCA 279871
||| | | | | ||| | | || | | | | || || ||||| |||||
Sbjct 133055 GAAGTGGTTGGAGACTTACTTGAAGAGCCACCCCGACATCACCTCGCTGATTGTTTCTCA 132996
Query 279872 CGACTCTGGCTTCCTAGATGCCGTGTGCTCTGCCATCATTCACTATGAG 279920
||||||||||||| | |||| || ||| |||| |||||| |||
Sbjct 132995 CGACTCTGGCTTCTTGGATGAGGTCACTACTGACATCTATCACTACGAG 132947
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1027829412101801
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |