Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Davidsoniella_20virescens_20[genbank_20GCA_5F001513805.1_202016-01- 13] 561 sequences; 33,427,969 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq7 150 4e-31 seq543 107 4e-18 seq121 93.3 9e-14 >seq7 Length=77910 Score = 150 bits (166), Expect = 4e-31 Identities = 281/406 (69%), Gaps = 14/406 (3%) Strand=Plus/Minus Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622 || ||||| || | |||||| ||||||| || |||||||||||||||||||||||| Sbjct 73350 TCAAAGAAGTTGGTCTTGCCTCCCAGAGAAATGTTCTCCATGAAGTCGAAGGGGTTTGTA 73291 Query 251623 GCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGA 251682 ||| |||| ||| | |||||| || || | || ||||| || || ||||| | Sbjct 73290 GCACGGTACACTTTGTCGTTGCCAAGGGCAACCAGGAGACGGTCAGCAACGAACTCAATG 73231 Query 251683 TACTGTCCCATCAGTTCAGAGTTCATGCCAATCATACGACAAGGAATTGCCTCACAGATG 251742 ||||| |||||| || | ||||||||| | || || ||||||| |||||| | | Sbjct 73230 TACTGCTTCATCAGATCGGCGTTCATGCCTAGCAGACCGCAAGGAAGAGCCTCAGTTAAG 73171 Query 251743 AATTCCTTTTCGTTGGCAACTGCCTCCTCCACAATTGCCTTCACCTG-----TGCCAGAG 251797 || ||||| ||| || |||| || || | ||| | ||| | ||| || | Sbjct 73170 AACTCCTTCTCGATGACAACAGCATCAGTGATAATCTTTTCGACCAGTTCCTTGCTAG-G 73112 Query 251798 ACAGCTTGTTCTCCAGCTTTGAGTAC-AGGAGCTCGCCAAA-CTGTTGGTGCAGACCCTC 251855 || | ||||| || | ||| || | ||| || ||| |||| ||||| |||||| Sbjct 73111 AC-GGTTGTT---CAAGTGCGAGAACAACAAGCAAGCAAAATCTGT--GTGCAAACCCTC 73058 Query 251856 GTCGCGACTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCCACGGTTCCTGAG 251915 || || ||| | |||||| || | ||| |||||||||| ||||| || | || Sbjct 73057 ATCACGGGAGATAAGCTCGTTAGAGAAGGTCAGACCAGGCATCAGACCACGCTTACGTAG 72998 Query 251916 CCAGAAGATTGCGCAAAAGGATCCAGAGAACAGCAGACCCTCGACA 251961 ||||||||| | ||||| |||||||| | | |||||||||| Sbjct 72997 CCAGAAGATAGAAGCAAAGGCACCAGAGAAGAAGATACCCTCGACA 72952 >seq543 Length=133180 Score = 107 bits (118), Expect = 4e-18 Identities = 171/243 (70%), Gaps = 2/243 (1%) Strand=Plus/Plus Query 279324 GCAGAGAAGGAGACTGAGCCAGGTGAGGATCTGTGTGACTGTGATTTCTCGCTCGCATAT 279383 || ||| |||| |||| ||| ||||||||||| |||| |||||| || || || Sbjct 104674 GCTGAGGAGGACGATGAGGAAGGCGAGGATCTGTGCAACTGCACTTTCTCTCTTGCCTAC 104733 Query 279384 GGTGGGAAGATTCTGCTAAACTCTACCCGCCTCAACATCAAGCGTGGCAACCGGTATGGT 279443 |||| |||||||| || ||| || | |||| |||||||||| | || || ||| Sbjct 104734 GGTGCCAAGATTCTTCTTAACCAGACTCACCTCCGTCTCAAGCGTGGTCAGCGCTACGGT 104793 Query 279444 CTCATCGGTCCCAATGGAGCGGGTAAGAGCACTCTAATGCGCGCCATTGCAAACGGTCAG 279503 || |||||||||||| | || ||| || || ||||| ||||| |||| ||| Sbjct 104794 CTTTGCGGTCCCAATGGTTCCGGCAAGTCTACCCTCATGCGTGCCATCAACAACGAGCAG 104853 Query 279504 CTGGAAGGATTTCCTAACGCA-TCTGAGGTAAGGACAGTGTATGTAGAGCACGACATCGA 279562 | | ||| ||||| | ||| ||||| || | ||| || | || ||||||||| | || Sbjct 104854 GTCG-AGGGTTTCCCCAAGCAGTCTGAAGTCAAGACTGTCTTCGTCGAGCACGACCTGGA 104912 Query 279563 CTC 279565 ||| Sbjct 104913 CTC 104915 Score = 104 bits (114), Expect = 5e-17 Identities = 458/707 (65%), Gaps = 45/707 (6%) Strand=Plus/Plus Query 279705 CTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTGCGTGCCGAT 279764 || || ||||||||||||||||||||||| || || ||| | | | | ||||| Sbjct 105058 CTCTCTGGTGGTTGGAAGATGAAGCTGGCTCTGTGCCGTGCCGTCTTTGAGGCTCCCGAT 105117 Query 279765 GTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGCCTGGCTAGTG 279824 |||| || || |||||||| |||||||| |||| | ||||| ||||||| | Sbjct 105118 ATCCTGCTTCTGGATGAGCCTACCAACCATCTGGATGTGAAGAACGTCAAGTGGCTAGAG 105177 Query 279825 TCCTACCTAACCAGT-CTGAAGAATGTTTCTTCCCTCATTGTCTCTCACGACTCTGGCTT 279883 |||||| |||| || || ||||| |||||||||||||||||||||| || Sbjct 105178 GACTACCTGTGCAGTTCTCCT---TGCA-CTTCCATCATTGTCTCTCACGACTCTGGTTT 105233 Query 279884 CCTAGATGCCGTGTGCTCTGCCATCATTCACTATGAGCAAAATCTGAAGCTCTCCAAGC- 279942 ||| || || ||| ||| ||||||| |||| | ||||| ||||| Sbjct 105234 CCTCGACAATGTCTGCCAACATATCGTTCACTACGAGC---GCTTCAAGCT---CAAGCG 105287 Query 279943 --ACATCGGCAACCTGTCTGCTTTCGTGGCAAAGCGCCCTGAGGCGGCCGCCTACTATGA 280000 || || |||||| | | ||||| ||| |||| || ||||||| || Sbjct 105288 TTACCGTGGTAACCTGGCCGAGTTCGTCAAGAAGTGCCCCTCAGCCAAGTCCTACTACGA 105347 Query 280001 CCTGAAGGACGCCACCGCCA---AGTGGGAATTCCCTGAGCCAGGGTTTCTGGAGGGCAT 280057 || | ||| ||| | ||| ||||| ||||| || || || ||||| | Sbjct 105348 ACT---CGGTGCCTCCGAGATGGAGTTCACCTTCCCCGAGCCCGGTTTCCTTGAGGGTGT 105404 Query 280058 CACATCAAAGGATCGCGCAA----TCATG-AAGCTCCGTGGCGTCTCCTTTGC----TTA 280108 || | |||| || | || || | | | || | | ||| | | || Sbjct 105405 CAAGACCAAGGCCAAGGCCATTCTTCGTGCCACCAACATGACCT-TCCAGTACCCTGGTA 105463 Query 280109 TC-CCAATGGCCCCAACATCTTCAGCAGTGTCAACTCGCAGGTTTCTATGAACTCACGGA 280167 | |||| ||||| | || | || || || || ||| || ||| ||| || | Sbjct 105464 CCACCAA--GCCCC-AGATTTCCAACA---TCTCCTTCCAGTGCTCGCTGAGCTCTCGTA 105517 Query 280168 TTGGTGTCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTGGCG 280227 ||| ||||| || ||||| ||||| |||||||| || || ||||| ||||||||||| | Sbjct 105518 TTGCCGTCATCGGTCCCAACGGTGCCGGTAAGTCGACTCTGATCAACGTCCTGACTGGTG 105577 Query 280228 AGACCCAGG---CCACTGAGGGGTCCGTTTGGAAGCATCCCAACATGCGGATGGCTTACG 280284 || | || ||||| || ||| |||| ||||| || || || ||| Sbjct 105578 AG---CTGGTTCCCACTCTCGGTGAGATTTACCAGCACGAGAACATCCGTATTGCCTACA 105634 Query 280285 TCGCTCAGCACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCAATACA 280344 || |||||||||||| ||||||||| |||||||||||| ||| || | | |||| Sbjct 105635 TCAAGCAGCACGCTTTCGCCCACATCGATCACCACCTGGACAAGACCCCCTCCGAGTACA 105694 Query 280345 TTCAGTGGCGCTATGCA-AGTGGGCAGGATCTGGAGTCGGTGGATCG 280390 | |||||||| | | || | ||| |||||| ||| | |||| || Sbjct 105695 TCCAGTGGCG-TTTCCAGACTGGTGAGGATCGTGAGACCATGGACCG 105740 Score = 95.1 bits (104), Expect = 2e-14 Identities = 134/186 (72%), Gaps = 2/186 (1%) Strand=Plus/Plus Query 280702 CTCACTCTCGCATTCGCGGTCTTTCTGGAGGCCAGAAGGTCAAACTTGTCATCGGAGCA- 280760 ||||||||||||| ||||| ||||| || ||| ||||| | ||| | | || Sbjct 106097 CTCACTCTCGCATGAAGGGTCTGTCTGGTGGTCAGCGTGTCAAGGTCGTCCTAGCTGCCT 106156 Query 280761 GCTCTGTGGCAACACCCTCACGTGATCGTTCTCGACGAGCCTACCAACTATCTGGACCGC 280820 |||| ||||||| ||| ||| |||||||||| ||||||||||||||||||||||| || Sbjct 106157 GCTCA-TGGCAACGCCCCCACTTGATCGTTCTTGACGAGCCTACCAACTATCTGGATCGT 106215 Query 280821 GAGAGCCTGGGCGCTCTGAGTGCTGCTCTGGACACATTTGGCGGCGGCGTCGTAGTCATT 280880 || || || |||||| |||||| || || | || || ||| | ||||| Sbjct 106216 GACTCTCTAGGTGCTCTGTCCAAGGCTCTGCGCAAGTTCGAGGGTGGTGTCATCATCATT 106275 Query 280881 TCTCAC 280886 ||||| Sbjct 106276 ACTCAC 106281 >seq121 Length=136078 Score = 93.3 bits (102), Expect = 9e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 279692 GCCAGTAGGTTCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCT 279751 ||| || ||||||||||| ||||||||||||||||||||||| || |||| || || || Sbjct 133175 GCCCGTTGGTTCTCTGTCTGGTGGTTGGAAGATGAAGCTGGCTCTTGCTCGTGCTATGCT 133116 Query 279752 ACTGCGTGCCGATGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGT 279811 | || ||||| || || ||||| || || || |||||| |||| |||| || Sbjct 133115 GCAAAAGGCTGATGTTCTCCTACTTGACGAACCTACTAACCACCTGGATGTTGCCAATGT 133056 Query 279812 AGCCTGGCTAGTGTCCTACCTAACCAGTCTGAAGAATGTTTCTTCCCTCATTGTCTCTCA 279871 ||| | | | | ||| | | || | | | | || || ||||| ||||| Sbjct 133055 GAAGTGGTTGGAGACTTACTTGAAGAGCCACCCCGACATCACCTCGCTGATTGTTTCTCA 132996 Query 279872 CGACTCTGGCTTCCTAGATGCCGTGTGCTCTGCCATCATTCACTATGAG 279920 ||||||||||||| | |||| || ||| |||| |||||| ||| Sbjct 132995 CGACTCTGGCTTCTTGGATGAGGTCACTACTGACATCTATCACTACGAG 132947 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027829412101801