Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Davidsoniella_20virescens_20[genbank_20GCA_5F001513805.1_202016-01- 13] 561 sequences; 33,427,969 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq542 141 2e-28 seq548 138 2e-27 seq94 132 9e-26 >seq542 Length=123657 Score = 141 bits (156), Expect = 2e-28 Identities = 153/203 (75%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || || | |||||||| || |||||||| ||||||||||| ||||| ||| Sbjct 106627 CCACCACGCAGACGGAGGACCAAGTGGAGAGTGGACTCCTTTTGGATGTTGTAATCAGAG 106568 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || || || | ||||| |||||||| || || | ||| ||||| || || Sbjct 106567 AGGGTGCGGCCGTCCTCGAGTTGCTTGCCGGCGAAAATCAGACGTTGCTGGTCCGGAGGG 106508 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| |||||||| |||||||| | |||||| |||||||| || | ||| || || Sbjct 106507 ATGCCCTCCTTGTCCTGAATCTTGGACTTGACATTGTCGATGGTATCGGATGACTCAACC 106448 Query 68415 TCCAAGGTGATGGTTTTTCCCGT 68437 || | |||||| || || || || Sbjct 106447 TCGAGGGTGATAGTCTTGCCGGT 106425 Score = 138 bits (152), Expect = 2e-27 Identities = 163/221 (74%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || || | |||| || || || ||||| || |||||||| || || || Sbjct 106917 CCACCACGCAGACGTAGAACCAGATGCAGAGTAGACTCCTTCTGGATGTTGTAGTCAGAC 106858 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | |||||||| | ||||| || ||||| || || | || || || || ||| Sbjct 106857 AGGGTGCGGCCATCTTCAAGTTGCTTGCCAGCGAAAATCAGACGCTGCTGATCCGGAGGA 106798 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| ||||| || || ||||| | ||||||| ||||| || || | || || ||| Sbjct 106797 ATGCCCTCCTTATCCTGGATCTTGGACTTGACGTTGTCGATAGTATCAGAGGACTCGACT 106738 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATAT 68455 || | ||||||||| ||||| ||||||||||| |||| ||| Sbjct 106737 TCGAGGGTGATGGTCTTTCCGGTGAGGGTCTTAACGACTAT 106697 >seq548 Length=140442 Score = 138 bits (152), Expect = 2e-27 Identities = 138/179 (77%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 68274 TTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATG 68333 || |||||||| || || || || || | ||||| || | |||||| || ||||| || Sbjct 35074 TTCTGGATGTTGTAGTCAGACAGAGTACGGCCATCCTCAAGCTGCTTGCCAGCGAAGATC 35133 Query 68334 AGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCG 68393 || | || ||||| || |||||||| |||||||| |||||||| | ||||||| ||| Sbjct 35134 AGACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGAATCTTGGACTTGACGTTGTCG 35193 Query 68394 ATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAA 68452 || ||||| | || || || |||| ||| ||||| || ||||| |||||||||||||| Sbjct 35194 ATCGTGTCCGAGGACTCGACCTCCAGGGTAATGGTCTTACCCGTCAGGGTCTTGACGAA 35252 >seq94 Length=134607 Score = 132 bits (146), Expect = 9e-26 Identities = 142/188 (76%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 68274 TTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATG 68333 || |||||||| || ||||| || || | ||||| || | |||||| || ||||| || Sbjct 34138 TTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCCTCCAGCTGCTTACCAGCGAAGATC 34079 Query 68334 AGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCG 68393 || | || || || || |||||||| ||||| || || ||||| | |||||| ||| Sbjct 34078 AGGCGCTGCTGATCCGGGGGAATGCCCTCCTTATCCTGGATCTTAGACTTGACATTGTCG 34019 Query 68394 ATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAAT 68453 |||||||| | || || || || | ||| || || || ||||| |||||||||||||| Sbjct 34018 ATGGTGTCCGAGGACTCAACCTCGAGGGTAATCGTCTTACCCGTCAGGGTCTTGACGAAA 33959 Query 68454 ATCTGCAT 68461 |||||||| Sbjct 33958 ATCTGCAT 33951 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921615937122920