Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Davidsoniella_20virescens_20[genbank_20GCA_5F001513805.1_202016-01- 13] 561 sequences; 33,427,969 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq85 351 2e-91 seq7 288 2e-72 >seq85 Length=153405 Score = 351 bits (388), Expect = 2e-91 Identities = 1222/1884 (65%), Gaps = 61/1884 (3%) Strand=Plus/Minus Query 243741 TGAACTGGACGGGTGCGACGGCGGCCTTGGTCCTCAGGTAGTACATGCCGGTCTTGAGTC 243800 ||||||| | ||| || ||||||||| ||| | ||||||||||| ||||||||||| | Sbjct 97116 TGAACTGAATGGGAGCAGCGGCGGCCTGGGTACGTAGGTAGTACATACCGGTCTTGAGAC 97057 Query 243801 CACTGGACCAGGCGTGGAGGTGCATGGCCGTCAGCTTCTTCATCTTGAGCTTTGGGTCGT 243860 | |||| || | ||||||| || | ||| ||| || | ||||| | Sbjct 97056 CGAGCTTCCAGCCGGCAAAGTGCATGCTGGTGATCTTACCCAT----AG--TAGGGTCCT 97003 Query 243861 CCTCGCACAGAAAGAGGTTGAGGGACTGGCTCTGGTCGACGAAGGGCGCC-CGCTCTGCG 243919 | | ||| | || || ||||| |||||||| ||| | |||| || || || Sbjct 97002 TCATGT---GAATG---TTCAGCGACTGCGACTGGTCGATGAAAG-CGCCACGATCGGCA 96950 Query 243920 GCCATGGTGATGA-GGTCCTTCTGAGATATCTCATACGCCGTCTTGTAGATGGGCTTGAG 243978 ||||| | | ||| | |||||| ||||| | | |||||||| | || ||||| Sbjct 96949 GCCATCTGCACAACGGTACG-CTGAGAAATCTCCCAGACGGTCTTGTACAGGGCCTTGAT 96891 Query 243979 GTGCTCGGGGAACCCTTCGATGTTCTGCACCGAGCCCTTGTGGACGATGAGCTGGGTGCG 244038 || |||||| |||||| || ||||| || || | | |||| || | Sbjct 96890 GTCGGCGGGGATATTAGGGATGTTTTGGACCGAACCGTTATCCGCAATGATACGGTTCTT 96831 Query 244039 CATGTTATCGTTCCACAGGCCCA-AGCGCTCCAG----CGCCTCGACCAGGTGCCTGTTC 244093 |||| | ||| ||||||||| | | || |||| ||| | |||||| | || Sbjct 96830 CATGGTGTCGGACCACAGGCCAAGATCGA-CCAGGTCACGCAGCAACCAGGGG----TTA 96776 Query 244094 ACCACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGGCTCG 244153 || ||||| ||||| || | |||||| ||||||||||||| ||| | || |||||| Sbjct 96775 ACAACCTGGAACTCACCAGCCAGCACACGGCGCTGGTAGATGTTCGAGGTGTAAGGCTCG 96716 Query 244154 ATGCTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGACACCAGC 244213 | || ||| ||||||| || ||||| | || ||||| ||||| || | || || Sbjct 96715 AAGCACTCGTTGTTGCCTAGGATCTGAGAGGTCGAGGCAGTTGGCATAGGAGCCAGGAGT 96656 Query 244214 AGACTGTTCCTCACGCCGTGCCTCTGGATGCGGAGTCTGAGCTCGTTCCAGTCCCACATG 244273 || ||| | |||||||||| || ||| | ||||| | ||||||||||| | Sbjct 96655 AGCGAGTTGCGCACGCCGTGCTGCTTGATCTGTTCCTTGAGCGAGGCCCAGTCCCACAGG 96596 Query 244274 CC-CGAGAGGTCCTCGCGTTTGAGGCCCCACATGTCAAACTGCAGCAGCCCCTTGCTGAC 244332 | | || ||| |||| ||||||||| |||||||| | |||| || Sbjct 96595 TCACTAGGGGTAA---CGTT-------CCACATGTCGAACTGCAGGATACCCTGAGATAC 96546 Query 244333 GGGGCTGCCCTCGTAGGTCGGGTAGGGACCGTCGCGCTGGGCCAGCTTACAGCTCTC-GT 244391 || ||||| ||||| | ||| | ||| ||| || || | || || | || Sbjct 96545 AGGCGAACCCTCATAGGTGGAGTAAGTACCCTCGGTTTGAGCAATCTCGCACGAGGCAGT 96486 Query 244392 CGAGGGCGGCGTAGTAGATGGTCTCGAAGATCATCTTGTTCATGTCGCGGGCCTTGCCGC 244451 | ||||| |||| ||||||||||||||||||| |||||||| |||||||| | | Sbjct 96485 C-AGGGCAGCGTGGTAGATGGTCTCGAAGATCTGCTTGTTCAGAGTGCGGGCCTCGGCAG 96427 Query 244452 AGGTGAAGGGGATGCCCATCATCATGAAGACGTCGGCCAGTCCCTGCACGCCGATGCCGA 244511 | ||| || |||| | | ||| | ||||| || ||||| || || | || | Sbjct 96426 ACTCGAAAGGCATGCGTAGGGCTAGGAAAGCATCGGCTAGACCCTGGACACCAACACCAA 96367 Query 244512 TGGGTCTGTGTCGCTTGTTGGAGCGCATGGCTTCGGGCACGGGGTAAAAGTTGCCGTCGA 244571 |||| | || ||| ||||| | || || ||||| ||||| |||| | |||| Sbjct 96366 TGGGGCGATGACGCATGTTGCTGTTGTGAGCCTCAGGCACAGGGTAGTGGTTGACATCGA 96307 Query 244572 TCACCTTGTTGAGGTTGCGGGTGATCATGCGGACGACGTCGGCCAGCAGCTGAAAGTCGT 244631 | | || ||||| || || || | || ||| |||| ||| || |||| Sbjct 96306 TAATGCGATTCAGGTTACGCACGACCACCTTGGTGATCTCGTGCAGCTTCTGGAAATCGT 96247 Query 244632 ACTCGTAGGGATCCTCGGCGATGGTGATCCTCACAAACTCGTTGAGGGCGACGCTGGCCA 244691 |||| |||| | | || || || | | || ||||| | ||| | Sbjct 96246 ACTC-------TCCTTTG---TTGTAGTCGACAAAGGATGGT--AGGGCTAGCGAGGCTA 96199 Query 244692 GGTTGCAGACGGCCACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGAGGTTAC 244751 ||||||| ||||| ||||| || | | ||||| || || || ||||| || || Sbjct 96198 GGTTGCATACGGCAACCTCATCGGGAGCGCAGTACTCGATGATTTCAGTGCATAGATTGG 96139 Query 244752 TGCACTTGATGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCTTGTAGA 244811 || ||| ||||| |||| | || ||| ||| |||||||||||||||||| | Sbjct 96138 AGCTGCGGATAGTGCCTAGGTTTTTCTGGTTGCTCTTCTTGTTGCAGGCGTCCTTGTACA 96079 Query 244812 GCATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGACGCTGTTCCAGAGGTCCCTAG 244871 ||||||| || ||||||||| |||||| |||| | | || ||| || | | | Sbjct 96078 GCATGAATGGGTTGCCGGTCTCGGTCTGGGCCTCGAGAATGGCGTACCACAGCTTCTGGG 96019 Query 244872 CCTTGACCGTCCTGCGAGCCTTGCCCTCTGCCTCGTAGCGGGTGTACAGGGCCTCGAACT 244931 |||||| || || | ||| || |||||| ||||| |||||||||| Sbjct 96018 CCTTGATGGTAAGACGGCCACGGCCTTCACTCTCGTACTTCTCATACAGAGCCTCGAACT 95959 Query 244932 CGGGGCCCCAGACCTCGTCTAGGCCGGGGCACGACGCCGGGCACATGAGACTCCACTCGC 244991 | ||| || || |||| || |||||| ||||||||||| |||| | | Sbjct 95958 CCTCGCCGTAGCAATCAGCTAGTCCAGGGCACTCATTAGGGCACATGAGTGTCCAGTTGG 95899 Query 244992 CGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGAGGTCCC 245051 || | | ||| | || |||||| || ||||| ||||| || || |||| || || | Sbjct 95898 CGTTCTTTTCGACACGCTTCATGAACAGATCGGGAATCCACAGTGCTAGGAACAGATCAC 95839 Query 245052 TGGTCCTCTGCTCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGACGTCGA 245111 || | ||| ||| ||| |||||| | ||| || | || || || || ||| Sbjct 95838 GGGCACGAATCTCCTCCTTGCCGTGGTTCTTGCGCAGATCAAGGAACTCGAACACATCGG 95779 Query 245112 CGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCCGCTTGTTGCCTCCCTGGTCCA 245171 ||||||| ||||||| ||| | || | ||| ||||| |||||||| || |||||||| | Sbjct 95778 CGTGCCACGGCTCCAGGTAAATGGCAAAGGCACCGGGGCGCTTGTTACCACCCTGGTCGA 95719 Query 245172 CCATCCTCTCGAGCG-CGTTGAAGATGCGCAGGGTAGGCACTATGCCGTTAGAGTGGCCG 245230 | | | || | |||||||| ||||| | || || ||||||||||| |||| Sbjct 95718 CGTAGCGGGC-AGTGTTGTTGAAGACACGCAGCATGGGAACAATGCCGTTAGACGTGCCG 95660 Query 245231 TTGGTGCCCTTGATGTAGGCGCCCTTGCCCCTGAGGTTGCTGATGGACATGCCTAGTCCG 245290 |||||||| ||||| | ||| || | | || | || | || || | ||| Sbjct 95659 TTGGTGCCAGCAATGTACGAGCCAGTGGCACGGATACGGTGGACGTTCAGACCGATACCG 95600 Query 245291 CCGGCGTGCTTGGAGATGAGGGCGCAGCTCTTGATGGTGTCTGCTATGCCCTCCATGCTG 245350 ||||| ||||||||| | || || |||| | || || || || || |||||| Sbjct 95599 CCGGCCATCTTGGAGATCATAGCACAAGTCTTCAGCGTATCGTAGATACCATCAATGCTG 95540 Query 245351 TCCGACTTCATGTTGAGCAGAAAGCAGGAGGACAGCTGGGGCTTGGGGCTGCACGAGTTG 245410 || |||||| | | || ||||| || || ||||||| || || ||| | |||| Sbjct 95539 TCGTCCTTCATATCAACTAGGAAGCACGACGATAGCTGGGCCTGCGGTGTGCCAGCGTTG 95480 Query 245411 AACAGAGTGGGGCTGGCGTGGGTAAAGTAGCGGCTCGAGAGGAACCCGTACGTCTGGAGC 245470 || || ||||| |||||| || ||| | ||| || | | | ||| |||| |||| Sbjct 95479 AATAGCGTGGGCGAGGCGTGTGTGAAGAACTTGCTTGACATGTAGTTGTAAGTCTCGAGC 95420 Query 245471 AGAGCGTCGATGTTGTCGCCGTGGATCTGCAGGGCGCAC-CTCATGAGGGTGTGCTGGGG 245529 | | ||| | | ||| || ||| | ||| ||| | ||||| ||||||| || Sbjct 95419 ACACGGTCAACGCGGTCACCCCAGATGCCAACGGC-CACACGCATGATCATGTGCTGCGG 95361 Query 245530 CGTCTCG---ATGGGTCCCTCGGGTCCCTTGAGCATGTAGGAGCGCTCGAGCGTCTTGAA 245586 |||| || || || | ||| |||| ||| || ||||| || |||||||| Sbjct 95360 ACGCTCGACAATCTTGCCGTC---TAGCTTAAGCAGGTACGAACGCTCTAGGGTCTTGAA 95304 Query 245587 CCCAAAGTACGAGTAGCCAAAGTC 245610 ||||||||| |||| ||||| Sbjct 95303 GCCAAAGTACTGGTAGTTGAAGTC 95280 >seq7 Length=77910 Score = 288 bits (318), Expect = 2e-72 Identities = 589/861 (68%), Gaps = 32/861 (4%) Strand=Plus/Plus Query 42300 ATCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCCGAGGAGATTGACCTG 42359 |||||| |||||||||||||| || || |||||||| ||||||||||| || Sbjct 72527 ATCTGGCAGATGTACAAGAAGGCCGAGGCATCTTTTTGGACCGCTGAGGAGATTGATCTA 72586 Query 42360 GCCAAGGACACGGCCGGCTGGGAGTCACTGTCTGA----GAACGAAAAGTTTTTCCTCAA 42415 ||||||| || |||| | || |||| | | |||| | | ||| || Sbjct 72587 TCCAAGGATCTCCACGACTGGAACA-ACCGTCTAACCAAGGACGAGCAATACTTCATCTC 72645 Query 42416 AAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAG 42475 |||| ||||| ||||| || |||||||| || || ||||| ||||| |||| | Sbjct 72646 CCACATCCTGGCTTTCTTTGCTGCCTCTGATGGTATTGTCAACGAGAATCTGGTTGAGCG 72705 Query 42476 GTTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCAT 42535 ||| ||||| ||| | ||||| |||||||||||||| |||||||| || Sbjct 72706 TTTCTCTGGTGAGGTCCAGATCCCCGAGGCTCGCTGCTTCTACGGTTTCCAGATCATGAT 72765 Query 42536 AGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCCCGT 42595 |||||| | ||||| ||| ||| || | || || | || |||||| ||| || | Sbjct 72766 GGAGAACATCCACTCCGAGACCTACTCCCTATTGATCGATACTTACATCAAGGAGCCTGC 72825 Query 42596 CGAGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGA 42655 |||| | |||||||| ||||| || || || ||||||||| ||||| || Sbjct 72826 TCAGCGCACATACCTGTTCAACGCCATTGACACCATCCCCTGCATCCGCCGTAAGGCTGA 72885 Query 42656 CTGGGCGCTCAACTGGAT---CGAGAGTCCCGACGCAACGTTCGGCGAGAGGCTGGTAGC 42712 ||||| || || ||||| ||| || || | || |||||| || | || || || Sbjct 72886 TTGGGCCCTTAAGTGGATTTGCGACAG---AGAATCCACCTTCGGCCAGCGTCTCGTTGC 72942 Query 42713 CTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAA 42772 |||| | || |||||||| ||||||||||| || ||||| || || ||||||||||| | Sbjct 72943 CTTTGCTGCTGTCGAGGGTATCTTCTTCTCTGGTGCCTTTGCTTCTATCTTCTGGCT-AC 73001 Query 42773 GCAGAAGGTGTC-GATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGG 42831 | | | ||| |||||| || || |||||||| ||||| || ||| | | || |||| Sbjct 73002 GTAAGCGTGGTCTGATGCCTGGTCTGACCTTCTCTAACGAGCTTATCTCCCGTGATGAGG 73061 Query 42832 GGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAA--GCCCTC 42889 | |||| | || ||||| ||| | |||||||| ||| | | |||| | ||| Sbjct 73062 GTTTGCACACAGATTTTGCTTGCTTGTTGTTCTCG---CACTT---GAACAACCGTCCTA 73115 Query 42890 G-AAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCA 42948 | ||||| | |||| || ||||| || || || | ||||||||||||||| | | Sbjct 73116 GCAAGGAACTGGTCGAAAAGATTATCACTGATGCTGTTGTCATCGAGAAGGAGTTCTTAA 73175 Query 42949 CGCAGTCGCTGCC---CGTGTCCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACA 43005 | || | || || || || ||| | ||||||||| ||| || ||| |||||| Sbjct 73176 CTGAGGCTCTTCCTTGCG-GT--CTGCTAGGCATGAACGCCGATCTGATGAAGCAGTACA 73232 Query 43006 TCCAGTACGTCGCCGACCATCTCCTG--TGCCAGATGGGTCTCAGCCGCCTCTACAACAC 43063 | ||| ||| || |||| ||||||| |||| | || | | | ||| | Sbjct 73233 TTGAGTTCGTTGCTGACCGTCTCCTGGTTGCC--CTTGGCAACGACAAAGTGTACCGTGC 73290 Query 43064 GCCGTGCCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGA 43123 | |||||||||||| ||||||||||| || ||| |||||||||||||| || || Sbjct 73291 TACAAACCCCTTCGACTTCATGGAGAACATTTCTCTGGGAGGCAAGACCAACTTCTTTGA 73350 Query 43124 GAAGCGCGTCGCCGACTACCA 43144 |||||| || | |||||||| Sbjct 73351 GAAGCGTGTTGGTGACTACCA 73371 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944332577821360