Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Davidsoniella_20virescens_20[genbank_20GCA_5F001513805.1_202016-01- 13] 561 sequences; 33,427,969 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq542 120 7e-22 seq94 111 4e-19 >seq542 Length=123657 Score = 120 bits (132), Expect = 7e-22 Identities = 159/221 (72%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || || | || || ||||| | || || || ||||| || ||||| | Sbjct 106917 CCACCACGCAGACGTAGAACCAGATGCAGAGTAGACTCCTTCTGGATGTTGTAGTCAGAC 106858 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || ||||| || ||||| | ||| || || ||||| ||||||||||| ||| || Sbjct 106857 AGGGTGCGGCCATCTTCAAGTTGCTTGCCAGCGAAAATCAGACGCTGCTGATCCGGAGGA 106798 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || || || ||||||||||| || | || ||||| || |||| ||| || || ||| Sbjct 106797 ATGCCCTCCTTATCCTGGATCTTGGACTTGACGTTGTCGATAGTATCAGAGGACTCGACT 106738 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATAT 288467 ||||| ||||| ||||| ||||| || ||||| |||| ||| Sbjct 106737 TCGAGGGTGATGGTCTTTCCGGTGAGGGTCTTAACGACTAT 106697 Score = 120 bits (132), Expect = 7e-22 Identities = 167/233 (72%), Gaps = 6/233 (3%) Strand=Plus/Minus Query 288244 TGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCG 288303 || ||||| || || | || || ||||| | || || ||||| || || |||||| Sbjct 107376 TGGCCACCACGCAGACGCAGAACCAGATGTAGGGTCGACTCCTTTTGAATGTTGTAGTCG 107317 Query 288304 GCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT 288363 | || ||||| ||||| || | || || || |||||||| ||||||||||| || Sbjct 107316 GATAGGGTGCGACCGTCCTCCAGCTGCTTACCAGCGAAGATGAGACGCTGTTGG---TCC 107260 Query 288364 GGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGAT 288420 ||| || || || || |||||||| || | |||||||| || || | ||| || Sbjct 107259 GGGGGAATACCCTCCTTGTCCTGGATCTTGGACTTCACGTTGTCAATGGTGTCGGAAGAC 107200 Query 288421 TCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || || ||||| ||||| || || ||||||||||| || |||||||| Sbjct 107199 TCGACCTCAAGAGTGATGGTCTTGCCAGTGAGAGTCTTGACAAAGATCTGCAT 107147 Score = 107 bits (118), Expect = 5e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || || | || || ||||| | || || || ||||| || ||||| | Sbjct 107145 CCACCACGCAGACGCAGAACCAGATGCAGAGTAGACTCCTTCTGGATGTTGTAGTCAGAC 107086 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || |||||||| || | || || || ||||| || |||||||| || || Sbjct 107085 AGAGTACGTCCGTCCTCCAGCTGCTTACCAGCGAAAATGAGACGCTGCTGGTCCGGAGGA 107026 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || || || || ||||| || || | |||||||| || || | ||| ||||| || Sbjct 107025 ATACCCTCCTTGTCCTGAATCTTGGACTTCACGTTGTCAATGGTATCTGAAGATTCAACC 106966 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| ||||| ||||| || || ||||||||||| || |||||||| Sbjct 106965 TCGAGAGTGATGGTCTTGCCAGTGAGAGTCTTGACAAAGATCTGCAT 106919 >seq94 Length=134607 Score = 111 bits (122), Expect = 4e-19 Identities = 140/191 (73%), Gaps = 6/191 (3%) Strand=Plus/Minus Query 288286 TTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATC 288345 || ||||| || ||||||| || ||||| || || || | || || || ||||||||| Sbjct 34138 TTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCCTCCAGCTGCTTACCAGCGAAGATC 34079 Query 288346 AGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 || ||||| ||| || ||| || || || ||||||||||| || | || || || Sbjct 34078 AGGCGCTGCTGA---TCCGGGGGAATGCCCTCCTTATCCTGGATCTTAGACTTGACATTG 34022 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | || || || || ||||| || |||||||| || ||||| ||||||||| Sbjct 34021 TCGATGGTGTCCGAGGACTCAACCTCGAGGGTAATCGTCTTACCCGTCAGGGTCTTGACG 33962 Query 288463 AATATCTGCAT 288473 || |||||||| Sbjct 33961 AAAATCTGCAT 33951 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179645920865358