Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Davidsoniella_20virescens_20[genbank_20GCA_5F001513805.1_202016-01-
13] 561 sequences; 33,427,969 total letters
Query= NC_009898.1
Length=368683
Score E
Sequences producing significant alignments: (Bits) Value
seq542 120 7e-22
seq94 111 4e-19
>seq542
Length=123657
Score = 120 bits (132), Expect = 7e-22
Identities = 159/221 (72%), Gaps = 0/221 (0%)
Strand=Plus/Minus
Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306
||||| || || | || || ||||| | || || || ||||| || ||||| |
Sbjct 106917 CCACCACGCAGACGTAGAACCAGATGCAGAGTAGACTCCTTCTGGATGTTGTAGTCAGAC 106858
Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366
|| ||||| || ||||| | ||| || || ||||| ||||||||||| ||| ||
Sbjct 106857 AGGGTGCGGCCATCTTCAAGTTGCTTGCCAGCGAAAATCAGACGCTGCTGATCCGGAGGA 106798
Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426
|| || || ||||||||||| || | || ||||| || |||| ||| || || |||
Sbjct 106797 ATGCCCTCCTTATCCTGGATCTTGGACTTGACGTTGTCGATAGTATCAGAGGACTCGACT 106738
Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATAT 288467
||||| ||||| ||||| ||||| || ||||| |||| |||
Sbjct 106737 TCGAGGGTGATGGTCTTTCCGGTGAGGGTCTTAACGACTAT 106697
Score = 120 bits (132), Expect = 7e-22
Identities = 167/233 (72%), Gaps = 6/233 (3%)
Strand=Plus/Minus
Query 288244 TGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCG 288303
|| ||||| || || | || || ||||| | || || ||||| || || ||||||
Sbjct 107376 TGGCCACCACGCAGACGCAGAACCAGATGTAGGGTCGACTCCTTTTGAATGTTGTAGTCG 107317
Query 288304 GCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT 288363
| || ||||| ||||| || | || || || |||||||| ||||||||||| ||
Sbjct 107316 GATAGGGTGCGACCGTCCTCCAGCTGCTTACCAGCGAAGATGAGACGCTGTTGG---TCC 107260
Query 288364 GGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGAT 288420
||| || || || || |||||||| || | |||||||| || || | ||| ||
Sbjct 107259 GGGGGAATACCCTCCTTGTCCTGGATCTTGGACTTCACGTTGTCAATGGTGTCGGAAGAC 107200
Query 288421 TCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
|| || || || ||||| ||||| || || ||||||||||| || ||||||||
Sbjct 107199 TCGACCTCAAGAGTGATGGTCTTGCCAGTGAGAGTCTTGACAAAGATCTGCAT 107147
Score = 107 bits (118), Expect = 5e-18
Identities = 160/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306
||||| || || | || || ||||| | || || || ||||| || ||||| |
Sbjct 107145 CCACCACGCAGACGCAGAACCAGATGCAGAGTAGACTCCTTCTGGATGTTGTAGTCAGAC 107086
Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366
|| || |||||||| || | || || || ||||| || |||||||| || ||
Sbjct 107085 AGAGTACGTCCGTCCTCCAGCTGCTTACCAGCGAAAATGAGACGCTGCTGGTCCGGAGGA 107026
Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426
|| || || || ||||| || || | |||||||| || || | ||| ||||| ||
Sbjct 107025 ATACCCTCCTTGTCCTGAATCTTGGACTTCACGTTGTCAATGGTATCTGAAGATTCAACC 106966
Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
||||| ||||| ||||| || || ||||||||||| || ||||||||
Sbjct 106965 TCGAGAGTGATGGTCTTGCCAGTGAGAGTCTTGACAAAGATCTGCAT 106919
>seq94
Length=134607
Score = 111 bits (122), Expect = 4e-19
Identities = 140/191 (73%), Gaps = 6/191 (3%)
Strand=Plus/Minus
Query 288286 TTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATC 288345
|| ||||| || ||||||| || ||||| || || || | || || || |||||||||
Sbjct 34138 TTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCCTCCAGCTGCTTACCAGCGAAGATC 34079
Query 288346 AGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402
|| ||||| ||| || ||| || || || ||||||||||| || | || || ||
Sbjct 34078 AGGCGCTGCTGA---TCCGGGGGAATGCCCTCCTTATCCTGGATCTTAGACTTGACATTG 34022
Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462
|| || | || || || || ||||| || |||||||| || ||||| |||||||||
Sbjct 34021 TCGATGGTGTCCGAGGACTCAACCTCGAGGGTAATCGTCTTACCCGTCAGGGTCTTGACG 33962
Query 288463 AATATCTGCAT 288473
|| ||||||||
Sbjct 33961 AAAATCTGCAT 33951
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1179645920865358
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |