Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Davidsoniella_20virescens_20[genbank_20GCA_5F001513805.1_202016-01- 13] 561 sequences; 33,427,969 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq85 188 7e-43 >seq85 Length=153405 Score = 188 bits (208), Expect = 7e-43 Identities = 443/661 (67%), Gaps = 16/661 (2%) Strand=Plus/Plus Query 93715 AATTACGATTACTTTGCCTTCAAAACTCTGGAGAAGTCGTACCTCCTCAAGATGGATGGC 93774 || ||| | ||||||| |||||| || || ||| |||||||| || ||| | || ||| Sbjct 95286 AACTACCAGTACTTTGGCTTCAAGACCCTAGAGCGTTCGTACCTGCTTAAGCTAGACGGC 95345 Query 93775 AGGGTTTCCGAGCGACCGCACCAGCTGCTGATGCGCGTCGCCATCGGGATTCACGGCCAC 93834 | | || |||||| ||||| || || | ||||| || ||| | || || || || Sbjct 95346 AAGATTGTCGAGCGTCCGCAGCACATGATCATGCGTGTGGCCGTTGGCATCTGGGGTGAC 95405 Query 93835 GACATG--CCGAATGTTTTGCGGGCTTTCAGAGACATGCGGGACAAGAGGTATACCATGG 93892 | | ||| ||| | | ||| || ||||| |||| | || | Sbjct 95406 CGCGTTGACCG--TGTGCTCGAGACTTACAACTACATGTCAAGCAAGTTCTTCACACACG 95463 Query 93893 CCACCCCGACCCTGTTCAACGCGGGGACCCCGGTGCCACAGATGTCTTCGTGTTTCCT-G 93951 || | || || || |||||||| || || ||| | | ||| | || ||||| ||||| | Sbjct 95464 CCTCGCCCACGCTATTCAACGCTGGCACACCGCAGGCCCAGCTATCGTCGTGCTTCCTAG 95523 Query 93952 ATGACGAACAAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGACC 94011 ||| | |||| |||| ||| || || | ||| | || ||| ||||| | Sbjct 95524 TTGAT-ATGAAGGACGACAGCATTGATGGTATCTACGATACGCTGAAGACTTGTGCTATG 95582 Query 94012 ATCTCAAAATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTA--CGTGCCAGGGGTT 94069 ||||| || || || || ||||| | | |||||| |||| ||||||| || | Sbjct 95583 ATCTCCAAGATGGCCGGCGGTATCGGTCTGAACGTCCAC--CGTATCCGTGCCACTGGCT 95640 Query 94070 CCTACATCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCA 94129 | ||||| || ||||| ||||| || |||||| | || || ||||| || ||||||| Sbjct 95641 CGTACATTGCTGGCACCAACGGCACGTCTAACGGCATTGTTCCCATGCTGCGTGTCTTCA 95700 Query 94130 ACAACGCGGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCT 94189 ||||| | || |||||||| |||||||||||| | | | ||| | || || | | Sbjct 95701 ACAACACTGCCCGCTACGTCGACCAGGGTGGTAACAAGCGCCCCGGTGCCTTTGCCATTT 95760 Query 94190 ATCTCGAGCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGCA 94249 | || ||||| |||||||| || ||| | ||| | || ||||| ||||||||||||| Sbjct 95761 ACCTGGAGCCGTGGCACGCCGATGTGTTCGAGTTCCTTGATCTGCGCAAGAACCACGGCA 95820 Query 94250 ACGATCTGGAGA---GGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTA 94306 | || ||||| | ||| | || || ||| || || ||| | || || || || | Sbjct 95821 AGGA---GGAGATTCGTGCCCGTGATCTGTTCCTAGCACTGTGGATTCCCGATCTGTTCA 95877 Query 94307 TGAAACGCGTCGAGAAAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGAATGTCCCGGAC 94366 |||| || ||||| || ||| || ||||| || | || || ||||| || || |||| Sbjct 95878 TGAAGCGTGTCGAAAAGAACGCCAACTGGACACTCATGTGCCCTAATGAGTGCCCTGGAC 95937 Query 94367 T 94367 | Sbjct 95938 T 95938 Score = 127 bits (140), Expect = 2e-24 Identities = 208/298 (70%), Gaps = 4/298 (1%) Strand=Plus/Plus Query 95077 CACGGTGTGAAAAACGCGCTGCTTGTGGCCCCCATGCCCACGGCCTCCACGGCGCAGATC 95136 ||||| ||| ||| |||| || |||| || ||||| || ||||| || | |||||| Sbjct 96636 CACGGCGTGCGCAACTCGCTACTCCTGGCTCCTATGCCAACTGCCTCGACCTCTCAGATC 96695 Query 95137 CTTGGCAACAACGAGTCGTTCGAACCCTTCACCTCCAACGTGTACAACAGGCGGGTGCTC 95196 || ||||||||||||| ||||| || | |||||| ||| | ||| | | || ||||| Sbjct 96696 CTAGGCAACAACGAGTGCTTCGAGCCTTACACCTCGAACATCTACCAGCGCCGTGTGCTG 96755 Query 95197 GCCGGGGAATTCCCCGTCATCAACAAGCACCTCCTACGGGACCTGACGTC--TCTGGGTG 95254 || || || |||| || | ||| | || || |||||| ||| ||| || Sbjct 96756 GCTGGTGAGTTCCAGGTTGTTAACCCCTGGTTGCTGCGTGACCTG--GTCGATCTTGGCC 96813 Query 95255 TGTGGGGTGACAAGGTCAAGAACCAACTGCTACGCGCCAACGGCTCCGTCCAGAACATCC 95314 ||||| |||| | ||||||| | | | ||||| || ||||| ||||||| Sbjct 96814 TGTGGTCCGACACCATGAAGAACCGTATCATTGCGGATAACGGTTCGGTCCAAAACATCC 96873 Query 95315 CGCAAATACCGGAGGACATCAAGGCGCTCTACAAGACCGTGTGGGAGATCCCGCAGCG 95372 | | || || | ||||||||||| || ||||||||||| |||||||| | ||||| Sbjct 96874 CTAATATCCCCGCCGACATCAAGGCCCTGTACAAGACCGTCTGGGAGATTTCTCAGCG 96931 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494719730753560