Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Davidsoniella_20virescens_20[genbank_20GCA_5F001513805.1_202016-01-
13] 561 sequences; 33,427,969 total letters
Query= NC_011183.1
Length=154641
Score E
Sequences producing significant alignments: (Bits) Value
seq85 188 7e-43
>seq85
Length=153405
Score = 188 bits (208), Expect = 7e-43
Identities = 443/661 (67%), Gaps = 16/661 (2%)
Strand=Plus/Plus
Query 93715 AATTACGATTACTTTGCCTTCAAAACTCTGGAGAAGTCGTACCTCCTCAAGATGGATGGC 93774
|| ||| | ||||||| |||||| || || ||| |||||||| || ||| | || |||
Sbjct 95286 AACTACCAGTACTTTGGCTTCAAGACCCTAGAGCGTTCGTACCTGCTTAAGCTAGACGGC 95345
Query 93775 AGGGTTTCCGAGCGACCGCACCAGCTGCTGATGCGCGTCGCCATCGGGATTCACGGCCAC 93834
| | || |||||| ||||| || || | ||||| || ||| | || || || ||
Sbjct 95346 AAGATTGTCGAGCGTCCGCAGCACATGATCATGCGTGTGGCCGTTGGCATCTGGGGTGAC 95405
Query 93835 GACATG--CCGAATGTTTTGCGGGCTTTCAGAGACATGCGGGACAAGAGGTATACCATGG 93892
| | ||| ||| | | ||| || ||||| |||| | || |
Sbjct 95406 CGCGTTGACCG--TGTGCTCGAGACTTACAACTACATGTCAAGCAAGTTCTTCACACACG 95463
Query 93893 CCACCCCGACCCTGTTCAACGCGGGGACCCCGGTGCCACAGATGTCTTCGTGTTTCCT-G 93951
|| | || || || |||||||| || || ||| | | ||| | || ||||| ||||| |
Sbjct 95464 CCTCGCCCACGCTATTCAACGCTGGCACACCGCAGGCCCAGCTATCGTCGTGCTTCCTAG 95523
Query 93952 ATGACGAACAAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGACC 94011
||| | |||| |||| ||| || || | ||| | || ||| ||||| |
Sbjct 95524 TTGAT-ATGAAGGACGACAGCATTGATGGTATCTACGATACGCTGAAGACTTGTGCTATG 95582
Query 94012 ATCTCAAAATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTA--CGTGCCAGGGGTT 94069
||||| || || || || ||||| | | |||||| |||| ||||||| || |
Sbjct 95583 ATCTCCAAGATGGCCGGCGGTATCGGTCTGAACGTCCAC--CGTATCCGTGCCACTGGCT 95640
Query 94070 CCTACATCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCA 94129
| ||||| || ||||| ||||| || |||||| | || || ||||| || |||||||
Sbjct 95641 CGTACATTGCTGGCACCAACGGCACGTCTAACGGCATTGTTCCCATGCTGCGTGTCTTCA 95700
Query 94130 ACAACGCGGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCT 94189
||||| | || |||||||| |||||||||||| | | | ||| | || || | |
Sbjct 95701 ACAACACTGCCCGCTACGTCGACCAGGGTGGTAACAAGCGCCCCGGTGCCTTTGCCATTT 95760
Query 94190 ATCTCGAGCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGCA 94249
| || ||||| |||||||| || ||| | ||| | || ||||| |||||||||||||
Sbjct 95761 ACCTGGAGCCGTGGCACGCCGATGTGTTCGAGTTCCTTGATCTGCGCAAGAACCACGGCA 95820
Query 94250 ACGATCTGGAGA---GGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTA 94306
| || ||||| | ||| | || || ||| || || ||| | || || || || |
Sbjct 95821 AGGA---GGAGATTCGTGCCCGTGATCTGTTCCTAGCACTGTGGATTCCCGATCTGTTCA 95877
Query 94307 TGAAACGCGTCGAGAAAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGAATGTCCCGGAC 94366
|||| || ||||| || ||| || ||||| || | || || ||||| || || ||||
Sbjct 95878 TGAAGCGTGTCGAAAAGAACGCCAACTGGACACTCATGTGCCCTAATGAGTGCCCTGGAC 95937
Query 94367 T 94367
|
Sbjct 95938 T 95938
Score = 127 bits (140), Expect = 2e-24
Identities = 208/298 (70%), Gaps = 4/298 (1%)
Strand=Plus/Plus
Query 95077 CACGGTGTGAAAAACGCGCTGCTTGTGGCCCCCATGCCCACGGCCTCCACGGCGCAGATC 95136
||||| ||| ||| |||| || |||| || ||||| || ||||| || | ||||||
Sbjct 96636 CACGGCGTGCGCAACTCGCTACTCCTGGCTCCTATGCCAACTGCCTCGACCTCTCAGATC 96695
Query 95137 CTTGGCAACAACGAGTCGTTCGAACCCTTCACCTCCAACGTGTACAACAGGCGGGTGCTC 95196
|| ||||||||||||| ||||| || | |||||| ||| | ||| | | || |||||
Sbjct 96696 CTAGGCAACAACGAGTGCTTCGAGCCTTACACCTCGAACATCTACCAGCGCCGTGTGCTG 96755
Query 95197 GCCGGGGAATTCCCCGTCATCAACAAGCACCTCCTACGGGACCTGACGTC--TCTGGGTG 95254
|| || || |||| || | ||| | || || |||||| ||| ||| ||
Sbjct 96756 GCTGGTGAGTTCCAGGTTGTTAACCCCTGGTTGCTGCGTGACCTG--GTCGATCTTGGCC 96813
Query 95255 TGTGGGGTGACAAGGTCAAGAACCAACTGCTACGCGCCAACGGCTCCGTCCAGAACATCC 95314
||||| |||| | ||||||| | | | ||||| || ||||| |||||||
Sbjct 96814 TGTGGTCCGACACCATGAAGAACCGTATCATTGCGGATAACGGTTCGGTCCAAAACATCC 96873
Query 95315 CGCAAATACCGGAGGACATCAAGGCGCTCTACAAGACCGTGTGGGAGATCCCGCAGCG 95372
| | || || | ||||||||||| || ||||||||||| |||||||| | |||||
Sbjct 96874 CTAATATCCCCGCCGACATCAAGGCCCTGTACAAGACCGTCTGGGAGATTTCTCAGCG 96931
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 494719730753560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |