Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Davidsoniella_20virescens_20[genbank_20GCA_5F001513805.1_202016-01- 13] 561 sequences; 33,427,969 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq542 129 7e-25 seq548 111 2e-19 seq94 102 9e-17 >seq542 Length=123657 Score = 129 bits (142), Expect = 7e-25 Identities = 171/235 (73%), Gaps = 2/235 (1%) Strand=Plus/Minus Query 46360 TTATTTGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTA 46419 ||| | ||| || | | ||||| |||||||| | || ||||||||| || ||||| Sbjct 107380 TTACTGGCCACCACGCAGACGCAGAACCAGATGTAGGGTCGACTCCTTTTGAATGTTGTA 107321 Query 46420 GTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTC 46479 ||||||||| ||||| |||| || |||||||| || ||||| || | ||||| ||||| Sbjct 107320 GTCGGATAGGGTGCGACCGTCCTCCAGCTGCTTACCAGCGAAGATGAGACGCTGTTGGTC 107261 Query 46480 GGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCG 46538 | || | | |||||||||| |||||| ||| | ||| | | | |||||| | Sbjct 107260 CGGGGGAATACCCTCCTTGTCCTGGATCTTGGACTTCA-CGTTGTCAATGGTGTCGGAAG 107202 Query 46539 ATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 | || || || | |||||||| ||||| || || || || |||||||| ||||| Sbjct 107201 ACTCGACCTCAAGAGTGATGGTCTTGCCAGTGAGAGTCTTGACAAAGATCTGCAT 107147 Score = 123 bits (136), Expect = 3e-23 Identities = 159/217 (73%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437 ||||| |||||||||| ||| |||||| ||||| |||||||| || ||||| || | Sbjct 107134 ACGCAGAACCAGATGCAGAGTAGACTCCTTCTGGATGTTGTAGTCAGACAGAGTACGTCC 107075 Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497 ||| || |||||||| || ||||| || | ||||||||||| | || | | |||||| Sbjct 107074 GTCCTCCAGCTGCTTACCAGCGAAAATGAGACGCTGCTGGTCCGGAGGAATACCCTCCTT 107015 Query 46498 GTCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCCACCGTGA 46556 |||| ||||| ||| | ||| | | | || || ||||| || || | |||| Sbjct 107014 GTCCTGAATCTTGGACTTCA-CGTTGTCAATGGTATCTGAAGATTCAACCTCGAGAGTGA 106956 Query 46557 TGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 |||| ||||| || || || || |||||||| ||||| Sbjct 106955 TGGTCTTGCCAGTGAGAGTCTTGACAAAGATCTGCAT 106919 Score = 96.9 bits (106), Expect = 4e-15 Identities = 91/116 (78%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||||||||| ||||| || || || ||||| |||| ||||| |||||||||||||| Sbjct 106592 CTCCTTTTGGATGTTGTAATCAGAGAGGGTGCGGCCGTCCTCGAGTTGCTTGCCGGCGAA 106533 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGA 46517 |||| || |||||||| | || | || |||||||||| ||||| ||||| Sbjct 106532 AATCAGACGTTGCTGGTCCGGAGGGATGCCCTCCTTGTCCTGAATCTTGGACTTGA 106477 >seq548 Length=140442 Score = 111 bits (122), Expect = 2e-19 Identities = 140/190 (74%), Gaps = 2/190 (1%) Strand=Plus/Plus Query 46396 TGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCC 46455 || || | |||| ||||| |||||||| || ||||| || | || || ||||||||||| Sbjct 35064 TGAACGCACCTTCTGGATGTTGTAGTCAGACAGAGTACGGCCATCCTCAAGCTGCTTGCC 35123 Query 46456 GGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTT 46515 ||||| |||| ||||||||||| | || | || |||||||||| ||||| ||| Sbjct 35124 AGCGAAGATCAGACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGAATCTTGGACTT 35183 Query 46516 GAGCGTCG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCG 46574 || ||| | | | |||||| || || || |||| || ||||| || |||||||| | Sbjct 35184 GA-CGTTGTCGATCGTGTCCGAGGACTCGACCTCCAGGGTAATGGTCTTACCCGTCAGGG 35242 Query 46575 TTTTAACAAA 46584 | || || || Sbjct 35243 TCTTGACGAA 35252 >seq94 Length=134607 Score = 102 bits (112), Expect = 9e-17 Identities = 139/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 46404 CCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 46463 |||| ||||| ||||||||||| || ||||| | || || |||||||| || ||||| | Sbjct 34140 CCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCCTCCAGCTGCTTACCAGCGAAGA 34081 Query 46464 TCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG 46523 ||| ||||||||| || | || | || |||||| ||| |||||| ||||| | Sbjct 34080 TCAGGCGCTGCTGATCCGGGGGAATGCCCTCCTTATCCTGGATCTTAGACTTGACATTGT 34021 Query 46524 CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAA 46583 | | ||||| || || || || | || || || || |||||||| || || || | Sbjct 34020 CGATGGTGTCCGAGGACTCAACCTCGAGGGTAATCGTCTTACCCGTCAGGGTCTTGACGA 33961 Query 46584 AGATTTGCATTTTG 46597 | || ||||| ||| Sbjct 33960 AAATCTGCATCTTG 33947 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565234436265720