Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Davidsoniella_20virescens_20[genbank_20GCA_5F001513805.1_202016-01-
13] 561 sequences; 33,427,969 total letters
Query= NC_013953.1
Length=156344
Score E
Sequences producing significant alignments: (Bits) Value
seq7 210 2e-49
seq542 156 4e-33
seq94 100 3e-16
seq548 87.8 2e-12
>seq7
Length=77910
Score = 210 bits (232), Expect = 2e-49
Identities = 557/843 (66%), Gaps = 11/843 (1%)
Strand=Plus/Minus
Query 132604 TTTTGATATTCGCCCACCTTTTTCTCaaaaaaaTTAGTTTTTCCCTCCAAGGAAATGAGC 132663
||||| || || || || |||||||| || || || || || ||| |||||| |
Sbjct 73374 TTTTGGTAGTCACCAACACGCTTCTCAAAGAAGTTGGTCTTGCCTCCCAGAGAAATGTTC 73315
Query 132664 GTCATAAAATCCAAGGGGTTGGCTGTGTTGTAGTGCTTGGTGCCGATCAGGTCGACGAGC 132723
||| || || |||||||| | | ||| ||| | | ||| | || ||
Sbjct 73314 TCCATGAAGTCGAAGGGGTTTGTAGCACGGTACACTTTGTCGTTGCCAAGGGCAACCAGG 73255
Query 132724 AGCCTGTCGGCCACGAACTCGATGTATTGCGACATGGTTTCGCAATTAAGTCCCAGCAGA 132783
|| | ||| || |||||||| ||||| ||| ||| ||| || | || ||||||
Sbjct 73254 AGACGGTCAGCAACGAACTCAATGTACTGCTTCATCAGATCGGCGTTCATGCCTAGCAGA 73195
Query 132784 C-GCACCGGCAGCGCTTCGGTGA-GAAAGCGTTGCTCGATGGCGACCGCGTCGGTGACGA 132841
| ||| || || || || || | ||| | || ||||||| | || || || |||| |
Sbjct 73194 CCGCAA-GGAAGAGCCTCAGTTAAGAACTCCTT-CTCGATGACAACAGCATCAGTGATAA 73137
Query 132842 TTTCCCTAACGCGCGCCGCGCTCGGCCGTTGCACCAAATGCTTGAACATCAAGCAAGCAA 132901
| | || | || ||| || || | ||| ||| ||||| |||||||||||
Sbjct 73136 TCTTTTCGACCAGTTCCTTGCTAGGACGGTTGTTCAAGTGCGAGAACAACAAGCAAGCAA 73077
Query 132902 AGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCA 132961
| || ||||| ||||| || | ||| || || ||||| ||| |||| || ||||
Sbjct 73076 AATCTGTGTGCAAACCCTCATCACGGGAGATAAGCTCGTTAGAGAAGGTCAGACCAGGCA 73017
Query 132962 TGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCT 133021
| || || || || ||||| || || | || || || || ||||||| ||||
Sbjct 73016 TCAGACCACGCTTACGTAGCCAGAAGATAGAAGCAAAGGCACCAGAGAAGAAGATACCCT 72957
Query 133022 CGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTCTTTGCTGGCGATCCAGC 133081
|||| || || || || || || |||| |||||| |||| |||| || | |||||
Sbjct 72956 CGACAGCAGCAAAGGCAACGAGACGCTGGCCGAAGGTGGATTCTCTGTCGCAAATCCACT 72897
Query 133082 GCAGCGCCCATTCGGCCTTTTCTTTGACGCACGGCATCGTTTCGATGGCGTTCAACAAAC 133141
|| ||||| || ||||| || ||| || || || || |||||||| ||| |
Sbjct 72896 TAAGGGCCCAATCAGCCTTACGGCGGATGCAGGGGATGGTGTCAATGGCGTTGAAC--AG 72839
Query 133142 GGAGTTTCTCTTCCGAGGAAC--GCACGTAGGTGTCGATGAGGGTCGAATACATTTCCGA 133199
| | | | || ||| | | ||| || ||||| | || || | || ||
Sbjct 72838 GTATGTGCGCTGAGCAGGCTCCTTGATGTAAGTATCGATCAATAGGGAGTAGGTCTCGGA 72779
Query 133200 GTGTACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACCGCGCCTCGACCACCTGCAC 133259
||| | ||||||||| ||| || || ||||| ||||| || |||||| | ||| ||
Sbjct 72778 GTGGATGTTCTCCATCATGATCTGGAAACCGTAGAAGCAGCGAGCCTCGGGGATCTGGAC 72719
Query 133260 TTCTTGAGCGAAACGCTCGACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGCGAAAAA 133319
|| || ||||||||| |||||||| |||||||| || || || ||| || || ||
Sbjct 72718 CTCACCAGAGAAACGCTCAACCAGATTCTCGTTGACAATACCATCAGAGGCAGCAAAGAA 72659
Query 133320 GGCCAGCACGTGCTTGATGAAATGGCGCTCGTTGTCGTTCAAGCG---CTCCCAGTCGCG 133376
||||| | ||| |||||| | |||||| | | | | || | ||||||| |
Sbjct 72658 AGCCAGGATGTGGGAGATGAAGTATTGCTCGTCCTTGGTTAGACGGTTGTTCCAGTCGTG 72599
Query 133377 CGTGTCCTTGGACAGGTCCACCTCCTCGACGGTCCAAAACGACGCCTCGGCTTTTTTGTA 133436
|||||||| || || | |||||| |||||||||| || |||||||| || |||||
Sbjct 72598 GAGATCCTTGGATAGATCAATCTCCTCAGCGGTCCAAAAAGATGCCTCGGCCTTCTTGTA 72539
Query 133437 CAT 133439
|||
Sbjct 72538 CAT 72536
>seq542
Length=123657
Score = 156 bits (172), Expect = 4e-33
Identities = 174/230 (76%), Gaps = 2/230 (1%)
Strand=Plus/Plus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
||||| || || || || || ||||| ||||| |||||||| | || |||||| | ||
Sbjct 107147 ATGCAGATCTTTGTCAAGACTCTCACTGGCAAGACCATCACTCTTGAGGTCGAGTCTTCC 107206
Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362
|||| | | | |||| | || || |||| ||||| ||||| |||||| | |||||
Sbjct 107207 GACACCATTGACAACG-TGAAGTCCAAGATCCAGGACAAGGAGGGTATTCCCCCGGACCA 107265
Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422
|||||| ||||| | ||| || || |||||||| |||| |||||||| |||||||||
Sbjct 107266 ACAGCGTCTCATCTTCGCTGGTAAGCAGCTGGAGGACGGTCGCACCCTATCCGACTACAA 107325
Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGCC 38472
||| |||||||| |||| || ||| |||| |||||| || | || ||||
Sbjct 107326 CATTCAAAAGGAGTCGACCCTACATCTGGTTCTGCGTCTGCGTGGTGGCC 107375
Score = 116 bits (128), Expect = 4e-21
Identities = 164/228 (72%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
||||| || || || || || ||||| ||||| |||||||| |||| || || | |
Sbjct 106919 ATGCAGATCTTTGTCAAGACTCTCACTGGCAAGACCATCACTCTCGAGGTTGAATCTTCA 106978
Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362
|| | | | | |||| | || || || | ||||| ||||| ||||| | |||||
Sbjct 106979 GATACCATTGACAACG-TGAAGTCCAAGATTCAGGACAAGGAGGGTATTCCTCCGGACCA 107037
Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422
||||| ||||||| ||| || || |||||||| |||| || || || ||||||||
Sbjct 107038 GCAGCGTCTCATTTTCGCTGGTAAGCAGCTGGAGGACGGACGTACTCTGTCTGACTACAA 107097
Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470
|||||| ||||| | || |||||| |||| |||||| || | || ||
Sbjct 107098 CATCCAGAAGGAGTCTACTCTGCATCTGGTTCTGCGTCTGCGTGGTGG 107145
Score = 109 bits (120), Expect = 5e-19
Identities = 159/222 (72%), Gaps = 2/222 (1%)
Strand=Plus/Plus
Query 38250 ATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGC 38309
||| |||| || || ||||| || || ||||||||| |||| |||||| || | || |
Sbjct 106697 ATAGTCGTTAAGACCCTCACCGGAAAGACCATCACCCTCGAAGTCGAGTCCTCTGATACT 106756
Query 38310 GTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCG 38368
| | |||| | || || |||| || || ||||| ||||| | || || |||||
Sbjct 106757 ATCGACAACG-TCAAGTCCAAGATCCAGGATAAGGAGGGCATTCCTCCGGATCAGCAGCG 106815
Query 38369 GCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCA 38428
|| |||| ||| ||||| || || || || | |||||||| ||||||||||||||
Sbjct 106816 TCTGATTTTCGCTGGCAAGCAACTTGAAGATGGCCGCACCCTGTCTGACTACAACATCCA 106875
Query 38429 AAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470
||||| | || |||||| |||| || ||| || | || ||
Sbjct 106876 GAAGGAGTCTACTCTGCATCTGGTTCTACGTCTGCGTGGTGG 106917
Score = 91.5 bits (100), Expect = 1e-13
Identities = 142/203 (70%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 38268 ACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCAAACGCTTAAAGAA 38327
|| ||||| || |||||| |||| || ||| | |||| | | | | | | ||
Sbjct 106425 ACCGGCAAGACTATCACCCTCGAGGTTGAGTCATCCGATACCATCGACAATGTCAAGTCC 106484
Query 38328 AAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAA 38387
|| || | ||||| ||||| || || | ||||| || || || |||| ||| |||||
Sbjct 106485 AAGATTCAGGACAAGGAGGGCATCCCTCCGGACCAGCAACGTCTGATTTTCGCCGGCAAG 106544
Query 38388 CAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCAT 38447
|| || || |||| ||||||||| || ||||||||||||||||| | || || ||
Sbjct 106545 CAACTCGAGGACGGCCGCACCCTCTCTGATTACAACATCCAAAAGGAGTCCACTCTCCAC 106604
Query 38448 TTGGTGCTGCGTTTGAGAGGCGG 38470
||||| || ||| || | || ||
Sbjct 106605 TTGGTCCTCCGTCTGCGTGGTGG 106627
>seq94
Length=134607
Score = 100 bits (110), Expect = 3e-16
Identities = 138/193 (72%), Gaps = 0/193 (0%)
Strand=Plus/Plus
Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300
|| ||||| || ||||| || || || ||||| || || || ||| |||| || ||| ||
Sbjct 33948 AAGATGCAGATTTTCGTCAAGACCCTGACGGGTAAGACGATTACCCTCGAGGTTGAGTCC 34007
Query 38301 ACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGAC 38360
| |||| | | | | | || || |||| || || ||||| |||||| | ||
Sbjct 34008 TCGGACACCATCGACAATGTCAAGTCTAAGATCCAGGATAAGGAGGGCATTCCCCCGGAT 34067
Query 38361 CAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 38420
|| ||||| || || | ||| || || |||||||| || | |||||||| |||||||
Sbjct 34068 CAGCAGCGCCTGATCTTCGCTGGTAAGCAGCTGGAGGATGGCCGCACCCTGTCCGACTAC 34127
Query 38421 AACATCCAAAAGG 38433
|||||||| ||||
Sbjct 34128 AACATCCAGAAGG 34140
>seq548
Length=140442
Score = 87.8 bits (96), Expect = 2e-12
Identities = 130/182 (71%), Gaps = 2/182 (1%)
Strand=Plus/Minus
Query 38253 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTG 38312
||||| || || || ||||| || ||||| ||| | || |||||| || | |||| |
Sbjct 35252 TTCGTCAAGACCCTGACGGGTAAGACCATTACCCTGGAGGTCGAGTCCTCGGACACGATC 35193
Query 38313 CA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCT 38371
| |||| | || || || | ||||| ||||| |||||| | ||||| ||||| ||
Sbjct 35192 GACAACG-TCAAGTCCAAGATTCAGGACAAGGAGGGCATTCCCCCGGACCAGCAGCGTCT 35134
Query 38372 CATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAA 38431
|| | ||| ||||| ||||| || || | || || || |||||||||||||| ||
Sbjct 35133 GATCTTCGCTGGCAAGCAGCTTGAGGATGGCCGTACTCTGTCTGACTACAACATCCAGAA 35074
Query 38432 GG 38433
||
Sbjct 35073 GG 35072
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 500169292538240
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