Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Davidsoniella_20virescens_20[genbank_20GCA_5F001513805.1_202016-01- 13] 561 sequences; 33,427,969 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq7 210 2e-49 seq542 156 4e-33 seq94 100 3e-16 seq548 87.8 2e-12 >seq7 Length=77910 Score = 210 bits (232), Expect = 2e-49 Identities = 557/843 (66%), Gaps = 11/843 (1%) Strand=Plus/Minus Query 132604 TTTTGATATTCGCCCACCTTTTTCTCaaaaaaaTTAGTTTTTCCCTCCAAGGAAATGAGC 132663 ||||| || || || || |||||||| || || || || || ||| |||||| | Sbjct 73374 TTTTGGTAGTCACCAACACGCTTCTCAAAGAAGTTGGTCTTGCCTCCCAGAGAAATGTTC 73315 Query 132664 GTCATAAAATCCAAGGGGTTGGCTGTGTTGTAGTGCTTGGTGCCGATCAGGTCGACGAGC 132723 ||| || || |||||||| | | ||| ||| | | ||| | || || Sbjct 73314 TCCATGAAGTCGAAGGGGTTTGTAGCACGGTACACTTTGTCGTTGCCAAGGGCAACCAGG 73255 Query 132724 AGCCTGTCGGCCACGAACTCGATGTATTGCGACATGGTTTCGCAATTAAGTCCCAGCAGA 132783 || | ||| || |||||||| ||||| ||| ||| ||| || | || |||||| Sbjct 73254 AGACGGTCAGCAACGAACTCAATGTACTGCTTCATCAGATCGGCGTTCATGCCTAGCAGA 73195 Query 132784 C-GCACCGGCAGCGCTTCGGTGA-GAAAGCGTTGCTCGATGGCGACCGCGTCGGTGACGA 132841 | ||| || || || || || | ||| | || ||||||| | || || || |||| | Sbjct 73194 CCGCAA-GGAAGAGCCTCAGTTAAGAACTCCTT-CTCGATGACAACAGCATCAGTGATAA 73137 Query 132842 TTTCCCTAACGCGCGCCGCGCTCGGCCGTTGCACCAAATGCTTGAACATCAAGCAAGCAA 132901 | | || | || ||| || || | ||| ||| ||||| ||||||||||| Sbjct 73136 TCTTTTCGACCAGTTCCTTGCTAGGACGGTTGTTCAAGTGCGAGAACAACAAGCAAGCAA 73077 Query 132902 AGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCA 132961 | || ||||| ||||| || | ||| || || ||||| ||| |||| || |||| Sbjct 73076 AATCTGTGTGCAAACCCTCATCACGGGAGATAAGCTCGTTAGAGAAGGTCAGACCAGGCA 73017 Query 132962 TGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCT 133021 | || || || || ||||| || || | || || || || ||||||| |||| Sbjct 73016 TCAGACCACGCTTACGTAGCCAGAAGATAGAAGCAAAGGCACCAGAGAAGAAGATACCCT 72957 Query 133022 CGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTCTTTGCTGGCGATCCAGC 133081 |||| || || || || || || |||| |||||| |||| |||| || | ||||| Sbjct 72956 CGACAGCAGCAAAGGCAACGAGACGCTGGCCGAAGGTGGATTCTCTGTCGCAAATCCACT 72897 Query 133082 GCAGCGCCCATTCGGCCTTTTCTTTGACGCACGGCATCGTTTCGATGGCGTTCAACAAAC 133141 || ||||| || ||||| || ||| || || || || |||||||| ||| | Sbjct 72896 TAAGGGCCCAATCAGCCTTACGGCGGATGCAGGGGATGGTGTCAATGGCGTTGAAC--AG 72839 Query 133142 GGAGTTTCTCTTCCGAGGAAC--GCACGTAGGTGTCGATGAGGGTCGAATACATTTCCGA 133199 | | | | || ||| | | ||| || ||||| | || || | || || Sbjct 72838 GTATGTGCGCTGAGCAGGCTCCTTGATGTAAGTATCGATCAATAGGGAGTAGGTCTCGGA 72779 Query 133200 GTGTACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACCGCGCCTCGACCACCTGCAC 133259 ||| | ||||||||| ||| || || ||||| ||||| || |||||| | ||| || Sbjct 72778 GTGGATGTTCTCCATCATGATCTGGAAACCGTAGAAGCAGCGAGCCTCGGGGATCTGGAC 72719 Query 133260 TTCTTGAGCGAAACGCTCGACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGCGAAAAA 133319 || || ||||||||| |||||||| |||||||| || || || ||| || || || Sbjct 72718 CTCACCAGAGAAACGCTCAACCAGATTCTCGTTGACAATACCATCAGAGGCAGCAAAGAA 72659 Query 133320 GGCCAGCACGTGCTTGATGAAATGGCGCTCGTTGTCGTTCAAGCG---CTCCCAGTCGCG 133376 ||||| | ||| |||||| | |||||| | | | | || | ||||||| | Sbjct 72658 AGCCAGGATGTGGGAGATGAAGTATTGCTCGTCCTTGGTTAGACGGTTGTTCCAGTCGTG 72599 Query 133377 CGTGTCCTTGGACAGGTCCACCTCCTCGACGGTCCAAAACGACGCCTCGGCTTTTTTGTA 133436 |||||||| || || | |||||| |||||||||| || |||||||| || ||||| Sbjct 72598 GAGATCCTTGGATAGATCAATCTCCTCAGCGGTCCAAAAAGATGCCTCGGCCTTCTTGTA 72539 Query 133437 CAT 133439 ||| Sbjct 72538 CAT 72536 >seq542 Length=123657 Score = 156 bits (172), Expect = 4e-33 Identities = 174/230 (76%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || ||||| ||||| |||||||| | || |||||| | || Sbjct 107147 ATGCAGATCTTTGTCAAGACTCTCACTGGCAAGACCATCACTCTTGAGGTCGAGTCTTCC 107206 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | || || |||| ||||| ||||| |||||| | ||||| Sbjct 107207 GACACCATTGACAACG-TGAAGTCCAAGATCCAGGACAAGGAGGGTATTCCCCCGGACCA 107265 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 |||||| ||||| | ||| || || |||||||| |||| |||||||| ||||||||| Sbjct 107266 ACAGCGTCTCATCTTCGCTGGTAAGCAGCTGGAGGACGGTCGCACCCTATCCGACTACAA 107325 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGCC 38472 ||| |||||||| |||| || ||| |||| |||||| || | || |||| Sbjct 107326 CATTCAAAAGGAGTCGACCCTACATCTGGTTCTGCGTCTGCGTGGTGGCC 107375 Score = 116 bits (128), Expect = 4e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || ||||| ||||| |||||||| |||| || || | | Sbjct 106919 ATGCAGATCTTTGTCAAGACTCTCACTGGCAAGACCATCACTCTCGAGGTTGAATCTTCA 106978 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 || | | | | |||| | || || || | ||||| ||||| ||||| | ||||| Sbjct 106979 GATACCATTGACAACG-TGAAGTCCAAGATTCAGGACAAGGAGGGTATTCCTCCGGACCA 107037 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| ||||||| ||| || || |||||||| |||| || || || |||||||| Sbjct 107038 GCAGCGTCTCATTTTCGCTGGTAAGCAGCTGGAGGACGGACGTACTCTGTCTGACTACAA 107097 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||| ||||| | || |||||| |||| |||||| || | || || Sbjct 107098 CATCCAGAAGGAGTCTACTCTGCATCTGGTTCTGCGTCTGCGTGGTGG 107145 Score = 109 bits (120), Expect = 5e-19 Identities = 159/222 (72%), Gaps = 2/222 (1%) Strand=Plus/Plus Query 38250 ATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGC 38309 ||| |||| || || ||||| || || ||||||||| |||| |||||| || | || | Sbjct 106697 ATAGTCGTTAAGACCCTCACCGGAAAGACCATCACCCTCGAAGTCGAGTCCTCTGATACT 106756 Query 38310 GTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCG 38368 | | |||| | || || |||| || || ||||| ||||| | || || ||||| Sbjct 106757 ATCGACAACG-TCAAGTCCAAGATCCAGGATAAGGAGGGCATTCCTCCGGATCAGCAGCG 106815 Query 38369 GCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCA 38428 || |||| ||| ||||| || || || || | |||||||| |||||||||||||| Sbjct 106816 TCTGATTTTCGCTGGCAAGCAACTTGAAGATGGCCGCACCCTGTCTGACTACAACATCCA 106875 Query 38429 AAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||| | || |||||| |||| || ||| || | || || Sbjct 106876 GAAGGAGTCTACTCTGCATCTGGTTCTACGTCTGCGTGGTGG 106917 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 38268 ACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCAAACGCTTAAAGAA 38327 || ||||| || |||||| |||| || ||| | |||| | | | | | | || Sbjct 106425 ACCGGCAAGACTATCACCCTCGAGGTTGAGTCATCCGATACCATCGACAATGTCAAGTCC 106484 Query 38328 AAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAA 38387 || || | ||||| ||||| || || | ||||| || || || |||| ||| ||||| Sbjct 106485 AAGATTCAGGACAAGGAGGGCATCCCTCCGGACCAGCAACGTCTGATTTTCGCCGGCAAG 106544 Query 38388 CAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCAT 38447 || || || |||| ||||||||| || ||||||||||||||||| | || || || Sbjct 106545 CAACTCGAGGACGGCCGCACCCTCTCTGATTACAACATCCAAAAGGAGTCCACTCTCCAC 106604 Query 38448 TTGGTGCTGCGTTTGAGAGGCGG 38470 ||||| || ||| || | || || Sbjct 106605 TTGGTCCTCCGTCTGCGTGGTGG 106627 >seq94 Length=134607 Score = 100 bits (110), Expect = 3e-16 Identities = 138/193 (72%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 || ||||| || ||||| || || || ||||| || || || ||| |||| || ||| || Sbjct 33948 AAGATGCAGATTTTCGTCAAGACCCTGACGGGTAAGACGATTACCCTCGAGGTTGAGTCC 34007 Query 38301 ACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGAC 38360 | |||| | | | | | || || |||| || || ||||| |||||| | || Sbjct 34008 TCGGACACCATCGACAATGTCAAGTCTAAGATCCAGGATAAGGAGGGCATTCCCCCGGAT 34067 Query 38361 CAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 38420 || ||||| || || | ||| || || |||||||| || | |||||||| ||||||| Sbjct 34068 CAGCAGCGCCTGATCTTCGCTGGTAAGCAGCTGGAGGATGGCCGCACCCTGTCCGACTAC 34127 Query 38421 AACATCCAAAAGG 38433 |||||||| |||| Sbjct 34128 AACATCCAGAAGG 34140 >seq548 Length=140442 Score = 87.8 bits (96), Expect = 2e-12 Identities = 130/182 (71%), Gaps = 2/182 (1%) Strand=Plus/Minus Query 38253 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTG 38312 ||||| || || || ||||| || ||||| ||| | || |||||| || | |||| | Sbjct 35252 TTCGTCAAGACCCTGACGGGTAAGACCATTACCCTGGAGGTCGAGTCCTCGGACACGATC 35193 Query 38313 CA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCT 38371 | |||| | || || || | ||||| ||||| |||||| | ||||| ||||| || Sbjct 35192 GACAACG-TCAAGTCCAAGATTCAGGACAAGGAGGGCATTCCCCCGGACCAGCAGCGTCT 35134 Query 38372 CATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAA 38431 || | ||| ||||| ||||| || || | || || || |||||||||||||| || Sbjct 35133 GATCTTCGCTGGCAAGCAGCTTGAGGATGGCCGTACTCTGTCTGACTACAACATCCAGAA 35074 Query 38432 GG 38433 || Sbjct 35073 GG 35072 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500169292538240