Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Davidsoniella_20virescens_20[genbank_20GCA_5F001513805.1_202016-01- 13] 561 sequences; 33,427,969 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq55 197 2e-45 seq196 183 4e-41 seq292 165 1e-35 >seq55 Length=135122 Score = 197 bits (218), Expect = 2e-45 Identities = 285/401 (71%), Gaps = 6/401 (1%) Strand=Plus/Plus Query 7463 TCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCA 7522 ||||| ||||||| ||| || || || || || | ||||| || |||||||| | ||| Sbjct 27080 TCTTCGCCACCCAGGTGGGTGTCACCGGCAGTAGACTTGACCTCGAAGATACCATCCTCA 27139 Query 7523 ATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTT---C 7579 ||| | | || || ||||| || |||||||||||||| || || || || ||||| | Sbjct 27140 ATGGTCAGCAGAGAGACATCGAAAGTACCACCACCCAGATCGAAGATCAGGACGTTGCGC 27199 Query 7580 GTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTA 7639 | | ||| || ||||| || |||||||| ||||| || || || || || || || Sbjct 27200 TCACCCTCGACT---TTCTTGTCAAGACCGTAGGCGATGGCAGCGGCAGTAGGCTCGTTG 27256 Query 7640 ATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGC 7699 || ||||| ||| |||||| || |||||| | | || || || || || || || Sbjct 27257 ATGATACGCAGAACGTTCAGACCGGCAATAAGACCGGAGTCCTTGGTAGCCTGGCGCTGA 27316 Query 7700 GAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATAC 7759 || ||||| |||||||| || || || | || |||| | || | |||| || || Sbjct 27317 GAGTCGTTGAAGTAGGCAGGAACAGTGATAACAGCGTTGTTAACGGTGGTACCAAGGTAG 27376 Query 7760 GATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCAAAC 7819 || || ||| | ||| ||| ||| | || ||||| || || |||||||||| | ||| Sbjct 27377 GACTCAGCGGTCTCTCGCATCTTGATCAGGACCATAGAGGAGATCTCTTCAGGGGTGAAC 27436 Query 7820 TGTTTCGTTTCACCGTTAAAATCAACTTCAATCATGGGTTT 7860 || || || ||||| || || ||||| ||||| ||||| || Sbjct 27437 TGCTTGGTCTCACCCTTGAACTCAACCTCAATGATGGGCTT 27477 >seq196 Length=97632 Score = 183 bits (202), Expect = 4e-41 Identities = 410/613 (67%), Gaps = 12/613 (2%) Strand=Plus/Minus Query 7456 ATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACC 7515 |||||||||||||||||||| ||| || || || || || || || ||||||| ||| Sbjct 29752 ATCGAAATCTTCACCACCCAGGTGAGTGTCACCAGCAGTAGCCAGAACCTCAAAGACACC 29693 Query 7516 TCCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAG---GTCAAAAATGAG 7572 | |||||| |||| |||||||| || ||||||||||| || || | ||||| Sbjct 29692 GCTCTCAATGGACAACAGAGAAACATCGAAGGTACCACCACCAAGATCGTAGACAATGAT 29633 Query 7573 TACGTTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGG 7632 | | | | |||| | |||| || |||||||| |||||||| || || || || Sbjct 29632 CTGGCGCTCACCAGCGTC---GGTCTTGTCAAGACCGTAGGCGATAGCGGCAGCTGTGGG 29576 Query 7633 TTCATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTG 7692 || || | |||||| || ||||| ||||| ||| | ||||| || || || || Sbjct 29575 CTCGTTGACAATACGGAGGATGTTCAAACCAGCGATAACGCCAGCATCCTTGGTAGCCTG 29516 Query 7693 TCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACC 7752 || || | |||||| ||||| || ||||| || || || |||| ||||| |||| || Sbjct 29515 ACGCTGAGCATCGTTGAAGTAAGCAGGGACGGTGACAACGGCGTGAGTGACGGTCTTGCC 29456 Query 7753 GAGATACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGC 7812 || || || || |||| || ||||| ||| |||| ||| | || ||||| || | Sbjct 29455 CAGGTAAGACTCGGCGACCTCCTTCATCTTGCCCAGAATCATGGCAGAGATCTCCTCGGG 29396 Query 7813 CGCAAACTGTTTCGTTTCACCGTTAAAATCAACTTCAATCATGGGTTTATCCGCAGCACC 7872 | || || || || || || || ||||| | || | || || || | Sbjct 29395 AGAGAAGGTCTTGGTGTCGCCCTTGAAGTCAACCTTAACGAAAGGCTT---GCCATCCTT 29339 Query 7873 GGGGATAACCTTATACGACCAATCTTTCATATCGTCTTGGACCTGTTGGTCCGAAAACTT 7932 | || |||||| || | | | || ||||| | || | | | ||| ||||| Sbjct 29338 GTTGACAACCTTGTAGGGGAAGTGCTTGATATCAGCCTGAATATCCTTGTCGTTGAACTT 29279 Query 7933 TCTTCCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTT 7992 | |||||||||||||| |||| || || ||||| ||||||| | | ||||| Sbjct 29278 GCGACCGATAAGACGCTTGACATCGAAGACAGTGTTGATGGGGTTGGCAGGAGCCTGGTT 29219 Query 7993 CTTCGCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGGGT 8052 ||| || ||||| || | ||||| || | || || || ||||||||||| || || Sbjct 29218 CTTGGCGGCGTCACCAACGAGACGCTC---CTCCTCAGTGAAGGCGACGTACGAAGGAGT 29162 Query 8053 CGTTCGATTCCCT 8065 | || || ||| Sbjct 29161 GATACGGTTACCT 29149 >seq292 Length=75382 Score = 165 bits (182), Expect = 1e-35 Identities = 487/746 (65%), Gaps = 31/746 (4%) Strand=Plus/Minus Query 7026 CGGCTTGGACCGTCGCCCCGTATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTT 7085 |||| ||||| | || ||||| || || |||||||||||||| || | || | ||| | Sbjct 18842 CGGCCTGGACGGCGGCACCGTAGGCAACGGCCTCATCGGGGTTGATGGACTTCTCCAGCT 18783 Query 7086 CTTTACCGTTAAAATAATCCGATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCAC 7145 || ||||| ||| |||| || | | | ||||| || ||||| || || || |||| Sbjct 18782 TCTTGCCGTTGAAAAAATCGGACAGAAGCTTCTGAATCTTGGGGATACGAGTGGAACCAC 18723 Query 7146 CGACCAAAACGATTTCATTCACTTTCGATTTATCGA--------TCTTTGAGTCTCGAAG 7197 | |||| |||||| |||| || | | || |||| || || || |||| Sbjct 18722 CAACCAGAACGATCTCATCGACCTGCTTCTTCTCGAGGCCAGCATCCTTCAGGACGGAAG 18663 Query 7198 TGTTTTTTCGACAGGTTCCATACATTTACGGAACAAGTCCATACA---CAGTTCCTCAAA 7254 |||| || |||| | ||| | ||| || || | ||| |||||||| Sbjct 18662 --------CGACGGGCTCCAGAG---TACCGGCGAAGGCCTTAGAGTTCAGCTCCTCAAA 18614 Query 7255 ACGTGCACGGGTAATGGATGTATAG--AAATCAACGCCGTCGTATAACGAATCAATTTCA 7312 ||| |||||||| || || | || || || | || ||| | | | || || || Sbjct 18613 ACGAGCACGGGTGATC--TGGACAGTGAAGTCCTCACCATCGAACAGGGTGTCGATCTCG 18556 Query 7313 ATGGTTGTTTGTGCCGTCGAAGATAACGTTCGCTTTGCGCGCTCACACGCCGTTCGTAAA 7372 ||||| || || || ||||| | || ||||| || ||||| || || || || | | Sbjct 18555 ATGGTAGTCTGGGCACCGGAAGACAGAGTACGCTTGGCACGCTCGCAAGCAGTACGGAGA 18496 Query 7373 CGACGAAGGGCACGCGGGTTACCGGAAATATCTTTCTTATGTTTACGTTTAAACTCTTCA 7432 ||||| || ||||| | | ||| || | ||| || || || || | || || | Sbjct 18495 CGACGCAGAGCACGGGCATCACCAGACAGATCCTTTTTGGTCTTGCGGGTGAAGTCCTTC 18436 Query 7433 GAGAAGT-GTCGAAGGAGTCTCGAATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGC 7491 | ||| ||| || || | | |||||||| | |||||||| ||| || || || || Sbjct 18435 TTGCAGTAGTCCAACAGGT-TGGTGTCGAAATCCTGACCACCCAGGTGAGTGTCACCAGC 18377 Query 7492 GGTCGCTTTGACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAACATCAAACGTACC 7551 ||| || ||||| || | ||| || | || | | || || ||||| || ||||| Sbjct 18376 GGTAGCCTTGACGGTGAAAACACCACCCTGGATAGTCAGCAGGGAGACATCGAAAGTACC 18317 Query 7552 ACCACCCAGGTCAAAAATGAGTACGTTCGTATCGTCGTC---TTTGTTCTTATCGAGACC 7608 ||||||||| || | || | ||||| || | ||| ||| | | ||||| Sbjct 18316 ACCACCCAGATCGTAGATCAAGACGTTGCGCTCCTTGTCAGACTTGCCGGAACCCAGACC 18257 Query 7609 GTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAGTTCAGGCCAGCAAT 7668 ||| || || || || || || || || || || ||||| ||| |||||| |||| ||| Sbjct 18256 GTAGGCAATGGCAGCGGCGGTAGGCTCGTTGATGATACGCAGAACGTTCAGACCAGAAAT 18197 Query 7669 AGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTAC 7728 | | || || || || || || || || ||||| |||||||| || || || | Sbjct 18196 GGCACCGGCGTCCTTGGTAGCCTGACGCTGGTTGTCGTTGAAGTAGGCAGGAACGGTGAT 18137 Query 7729 GACCGCGTCCGTGACTTTCTTACCGA 7754 ||| || | | ||| ||||| |||| Sbjct 18136 GACGGCCTTCTCGACCTTCTTGCCGA 18111 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635128346131240