Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Davidsoniella_20virescens_20[genbank_20GCA_5F001513805.1_202016-01-
13] 561 sequences; 33,427,969 total letters
Query= NC_014765.1
Length=198519
Score E
Sequences producing significant alignments: (Bits) Value
seq55 197 2e-45
seq196 183 4e-41
seq292 165 1e-35
>seq55
Length=135122
Score = 197 bits (218), Expect = 2e-45
Identities = 285/401 (71%), Gaps = 6/401 (1%)
Strand=Plus/Plus
Query 7463 TCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCA 7522
||||| ||||||| ||| || || || || || | ||||| || |||||||| | |||
Sbjct 27080 TCTTCGCCACCCAGGTGGGTGTCACCGGCAGTAGACTTGACCTCGAAGATACCATCCTCA 27139
Query 7523 ATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTT---C 7579
||| | | || || ||||| || |||||||||||||| || || || || ||||| |
Sbjct 27140 ATGGTCAGCAGAGAGACATCGAAAGTACCACCACCCAGATCGAAGATCAGGACGTTGCGC 27199
Query 7580 GTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTA 7639
| | ||| || ||||| || |||||||| ||||| || || || || || || ||
Sbjct 27200 TCACCCTCGACT---TTCTTGTCAAGACCGTAGGCGATGGCAGCGGCAGTAGGCTCGTTG 27256
Query 7640 ATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGC 7699
|| ||||| ||| |||||| || |||||| | | || || || || || || ||
Sbjct 27257 ATGATACGCAGAACGTTCAGACCGGCAATAAGACCGGAGTCCTTGGTAGCCTGGCGCTGA 27316
Query 7700 GAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATAC 7759
|| ||||| |||||||| || || || | || |||| | || | |||| || ||
Sbjct 27317 GAGTCGTTGAAGTAGGCAGGAACAGTGATAACAGCGTTGTTAACGGTGGTACCAAGGTAG 27376
Query 7760 GATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCAAAC 7819
|| || ||| | ||| ||| ||| | || ||||| || || |||||||||| | |||
Sbjct 27377 GACTCAGCGGTCTCTCGCATCTTGATCAGGACCATAGAGGAGATCTCTTCAGGGGTGAAC 27436
Query 7820 TGTTTCGTTTCACCGTTAAAATCAACTTCAATCATGGGTTT 7860
|| || || ||||| || || ||||| ||||| ||||| ||
Sbjct 27437 TGCTTGGTCTCACCCTTGAACTCAACCTCAATGATGGGCTT 27477
>seq196
Length=97632
Score = 183 bits (202), Expect = 4e-41
Identities = 410/613 (67%), Gaps = 12/613 (2%)
Strand=Plus/Minus
Query 7456 ATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACC 7515
|||||||||||||||||||| ||| || || || || || || || ||||||| |||
Sbjct 29752 ATCGAAATCTTCACCACCCAGGTGAGTGTCACCAGCAGTAGCCAGAACCTCAAAGACACC 29693
Query 7516 TCCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAG---GTCAAAAATGAG 7572
| |||||| |||| |||||||| || ||||||||||| || || | |||||
Sbjct 29692 GCTCTCAATGGACAACAGAGAAACATCGAAGGTACCACCACCAAGATCGTAGACAATGAT 29633
Query 7573 TACGTTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGG 7632
| | | | |||| | |||| || |||||||| |||||||| || || || ||
Sbjct 29632 CTGGCGCTCACCAGCGTC---GGTCTTGTCAAGACCGTAGGCGATAGCGGCAGCTGTGGG 29576
Query 7633 TTCATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTG 7692
|| || | |||||| || ||||| ||||| ||| | ||||| || || || ||
Sbjct 29575 CTCGTTGACAATACGGAGGATGTTCAAACCAGCGATAACGCCAGCATCCTTGGTAGCCTG 29516
Query 7693 TCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACC 7752
|| || | |||||| ||||| || ||||| || || || |||| ||||| |||| ||
Sbjct 29515 ACGCTGAGCATCGTTGAAGTAAGCAGGGACGGTGACAACGGCGTGAGTGACGGTCTTGCC 29456
Query 7753 GAGATACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGC 7812
|| || || || |||| || ||||| ||| |||| ||| | || ||||| || |
Sbjct 29455 CAGGTAAGACTCGGCGACCTCCTTCATCTTGCCCAGAATCATGGCAGAGATCTCCTCGGG 29396
Query 7813 CGCAAACTGTTTCGTTTCACCGTTAAAATCAACTTCAATCATGGGTTTATCCGCAGCACC 7872
| || || || || || || || ||||| | || | || || || |
Sbjct 29395 AGAGAAGGTCTTGGTGTCGCCCTTGAAGTCAACCTTAACGAAAGGCTT---GCCATCCTT 29339
Query 7873 GGGGATAACCTTATACGACCAATCTTTCATATCGTCTTGGACCTGTTGGTCCGAAAACTT 7932
| || |||||| || | | | || ||||| | || | | | ||| |||||
Sbjct 29338 GTTGACAACCTTGTAGGGGAAGTGCTTGATATCAGCCTGAATATCCTTGTCGTTGAACTT 29279
Query 7933 TCTTCCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTT 7992
| |||||||||||||| |||| || || ||||| ||||||| | | |||||
Sbjct 29278 GCGACCGATAAGACGCTTGACATCGAAGACAGTGTTGATGGGGTTGGCAGGAGCCTGGTT 29219
Query 7993 CTTCGCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGGGT 8052
||| || ||||| || | ||||| || | || || || ||||||||||| || ||
Sbjct 29218 CTTGGCGGCGTCACCAACGAGACGCTC---CTCCTCAGTGAAGGCGACGTACGAAGGAGT 29162
Query 8053 CGTTCGATTCCCT 8065
| || || |||
Sbjct 29161 GATACGGTTACCT 29149
>seq292
Length=75382
Score = 165 bits (182), Expect = 1e-35
Identities = 487/746 (65%), Gaps = 31/746 (4%)
Strand=Plus/Minus
Query 7026 CGGCTTGGACCGTCGCCCCGTATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTT 7085
|||| ||||| | || ||||| || || |||||||||||||| || | || | ||| |
Sbjct 18842 CGGCCTGGACGGCGGCACCGTAGGCAACGGCCTCATCGGGGTTGATGGACTTCTCCAGCT 18783
Query 7086 CTTTACCGTTAAAATAATCCGATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCAC 7145
|| ||||| ||| |||| || | | | ||||| || ||||| || || || ||||
Sbjct 18782 TCTTGCCGTTGAAAAAATCGGACAGAAGCTTCTGAATCTTGGGGATACGAGTGGAACCAC 18723
Query 7146 CGACCAAAACGATTTCATTCACTTTCGATTTATCGA--------TCTTTGAGTCTCGAAG 7197
| |||| |||||| |||| || | | || |||| || || || ||||
Sbjct 18722 CAACCAGAACGATCTCATCGACCTGCTTCTTCTCGAGGCCAGCATCCTTCAGGACGGAAG 18663
Query 7198 TGTTTTTTCGACAGGTTCCATACATTTACGGAACAAGTCCATACA---CAGTTCCTCAAA 7254
|||| || |||| | ||| | ||| || || | ||| ||||||||
Sbjct 18662 --------CGACGGGCTCCAGAG---TACCGGCGAAGGCCTTAGAGTTCAGCTCCTCAAA 18614
Query 7255 ACGTGCACGGGTAATGGATGTATAG--AAATCAACGCCGTCGTATAACGAATCAATTTCA 7312
||| |||||||| || || | || || || | || ||| | | | || || ||
Sbjct 18613 ACGAGCACGGGTGATC--TGGACAGTGAAGTCCTCACCATCGAACAGGGTGTCGATCTCG 18556
Query 7313 ATGGTTGTTTGTGCCGTCGAAGATAACGTTCGCTTTGCGCGCTCACACGCCGTTCGTAAA 7372
||||| || || || ||||| | || ||||| || ||||| || || || || | |
Sbjct 18555 ATGGTAGTCTGGGCACCGGAAGACAGAGTACGCTTGGCACGCTCGCAAGCAGTACGGAGA 18496
Query 7373 CGACGAAGGGCACGCGGGTTACCGGAAATATCTTTCTTATGTTTACGTTTAAACTCTTCA 7432
||||| || ||||| | | ||| || | ||| || || || || | || || |
Sbjct 18495 CGACGCAGAGCACGGGCATCACCAGACAGATCCTTTTTGGTCTTGCGGGTGAAGTCCTTC 18436
Query 7433 GAGAAGT-GTCGAAGGAGTCTCGAATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGC 7491
| ||| ||| || || | | |||||||| | |||||||| ||| || || || ||
Sbjct 18435 TTGCAGTAGTCCAACAGGT-TGGTGTCGAAATCCTGACCACCCAGGTGAGTGTCACCAGC 18377
Query 7492 GGTCGCTTTGACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAACATCAAACGTACC 7551
||| || ||||| || | ||| || | || | | || || ||||| || |||||
Sbjct 18376 GGTAGCCTTGACGGTGAAAACACCACCCTGGATAGTCAGCAGGGAGACATCGAAAGTACC 18317
Query 7552 ACCACCCAGGTCAAAAATGAGTACGTTCGTATCGTCGTC---TTTGTTCTTATCGAGACC 7608
||||||||| || | || | ||||| || | ||| ||| | | |||||
Sbjct 18316 ACCACCCAGATCGTAGATCAAGACGTTGCGCTCCTTGTCAGACTTGCCGGAACCCAGACC 18257
Query 7609 GTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAGTTCAGGCCAGCAAT 7668
||| || || || || || || || || || || ||||| ||| |||||| |||| |||
Sbjct 18256 GTAGGCAATGGCAGCGGCGGTAGGCTCGTTGATGATACGCAGAACGTTCAGACCAGAAAT 18197
Query 7669 AGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTAC 7728
| | || || || || || || || || ||||| |||||||| || || || |
Sbjct 18196 GGCACCGGCGTCCTTGGTAGCCTGACGCTGGTTGTCGTTGAAGTAGGCAGGAACGGTGAT 18137
Query 7729 GACCGCGTCCGTGACTTTCTTACCGA 7754
||| || | | ||| ||||| ||||
Sbjct 18136 GACGGCCTTCTCGACCTTCTTGCCGA 18111
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 635128346131240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |