Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Davidsoniella_20virescens_20[genbank_20GCA_5F001513805.1_202016-01- 13] 561 sequences; 33,427,969 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq85 150 2e-31 seq119 125 9e-24 seq7 123 3e-23 seq67 89.7 6e-13 >seq85 Length=153405 Score = 150 bits (166), Expect = 2e-31 Identities = 890/1404 (63%), Gaps = 53/1404 (4%) Strand=Plus/Plus Query 111612 CCACAGTACATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATATTGATTCTGTT 111671 || ||| ||||| ||||||| || || | || ||| || || |||| ||| Sbjct 95361 CCGCAGCACATGATCATGCGTGTGGCCGTTGGCATCTGGGGTGACCGCGTTGACCGTGTG 95420 Query 111672 TTGGAGACATACGACAAGATGTCCCGTGGTATGTTCATCCACGCAACACCAACCCTCTTC 111731 | ||||| ||| || | ||||| | | |||| ||||| | || || || ||| Sbjct 95421 CTCGAGACTTACAACTACATGTCAAGCAAGTTCTTCACACACGCCTCGCCCACGCTATTC 95480 Query 111732 AACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAACAAGGAGGAT 111791 |||||||| ||||| |||| | || || ||||| ||| | ||||| || Sbjct 95481 AACGCTGGCACACCGCAGGCCCAGCTATCGTCGTGCTTCCTAGTTGATATGAAGGACGAC 95540 Query 111792 TCAATCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAAAGTGGGCTGGT 111851 || |||| || |||| || || | ||||| ||||| ||| ||| || Sbjct 95541 AGCATTGATGGTATCTACGATACGCTGAAGACTTGTGCTATGATCTCCAAGATGGCCGGC 95600 Query 111852 GGTATCGGGATGCACATCCATGATGTCAGAGCCAACAAGTCTCGTA--TTAGAGGTACAA 111909 |||||||| || || |||| | || | |||| | |||||| || || || | Sbjct 95601 GGTATCGGTCTGAACGTCCACCGTATCCGTGCCACT--GGCTCGTACATTGCTGGCACCA 95658 Query 111910 ATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATG 111969 | || || | || ||| |||| ||||| || || || ||| ||| || ||||| | Sbjct 95659 ACGGCACGTCTAACGGCATTGTTCCCATGCTGCGTGTCTTCAACAACACTGCCCGCTACG 95718 Query 111970 TAAACCAAGCTGGGCGTCGCAAG------GGATCTATCGCAGTCTATCTTGAGCCATGGC 112023 | |||| | ||| | |||| || | | || | || || ||||| |||| Sbjct 95719 TCGACCAGGGTGG---TAACAAGCGCCCCGGTGCCTTTGCCATTTACCTGGAGCCGTGGC 95775 Query 112024 ACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAGGCGCGGT 112083 |||| ||| | | ||||||||||| |||| ||||| || | |||||| || Sbjct 95776 ACGCCGATGTGTTCGAGTTCCTTGATCTGCGCAAGAACCACGGCAAGGAGGAGATTCGTG 95835 Query 112084 GCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGA 112143 ||| ||||| ||| || || |||||||| ||||| ||||||||| | || || ||| Sbjct 95836 CCCGTGATCTGTTCCTAGCACTGTGGATTCCCGATCTGTTCATGAAGCGTGTCGAAAAGA 95895 Query 112144 GTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTCTCCGATGCCGTGGGTG 112203 | ||| ||| | ||| | || || | || || || || | ||| | || | Sbjct 95896 ACGCCAACTGGACACTCATGTGCCCTAATGAGTGCCCTGGACTAGCTGATTGCTACGGCG 95955 Query 112204 AGGAGTTTGAAGCCCTCTACACAAAGTACGAGGAAGAAAGTC--GGGCGACTGCGACGGT 112261 ||||||| || || || || ||||||||| ||| | | || || || || | Sbjct 95956 AGGAGTTCGAGGCTCTGTATGAGAAGTACGAGAGTGAAGGCCGTGGCCGTCT--TACCAT 96013 Query 112262 GCCAGCTGCCGATG-TGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCAT 112320 | || | || | ||||| | || |||||| || | || |||||||| || | |||| Sbjct 96014 -CAAGGCCCAGAAGCTGTGGTACGCCATTCTCGAGGCCCAGACCGAGACCGGCAACCCAT 96072 Query 112321 ATATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCA 112380 ||||| ||||| |||||||| ||| | ||||| || || || || | || ||| Sbjct 96073 TCATGCTGTACAAGGACGCCTGCAACAAGAAGAGCAACCAGAAAAACCTAGGCACTATCC 96132 Query 112381 AGAGTTCCAACCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGTGT 112440 || ||||| || || || |||||| | || | | |||||| || || | Sbjct 96133 GCAGCTCCAATCTATGCACTGAAATCATCGAGTACTGCGCTCCCGATGAGGTTGCCGTAT 96192 Query 112441 GTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAA-GACA-TTTGA 112498 | ||||| || || | || || || | ||| || | | | ||||| || | | || Sbjct 96193 GCAACCTAGCCTCGCTAGCCCTACCATCCTTTGTCGA-CTACA-ACAAAGGAGAGTACGA 96250 Query 112499 TTATGAAAAACTCCACGAAGTTACGAAAACTGTCACAAAAAACCTAAACAGAGTTATTGA 112558 || | || || ||||| | || || ||| ||||| || | |||| || Sbjct 96251 TTTCCAGAAGCTGCACGAGATCACCAAGGTGGTCGTGCGTAACCTGAATCGCATTATCGA 96310 Query 112559 TAGAAATTTTTACCCCGT---TGAGACTGCTCGTAAATCTAATATGAGACACCGTCCAAT 112615 | || ||||| || |||| |||| || || ||| | || || || || Sbjct 96311 TGTCAACCACTACCCTGTGCCTGAG---GCTCACAACAGCAACATGCGTCATCGCCCCAT 96367 Query 112616 TGGTCTCGGTGTCCAAGGTCTCGCGGATGTATTCATTCTTTGTCGCCACGCA-----TTT 112670 |||| | |||||||| ||||| || |||| | ||| | | | | ||||| || Sbjct 96368 TGGTGTTGGTGTCCAGGGTCTAGCCGATG----CTTTCCTAG-CCCTACGCATGCCTTTC 96422 Query 112671 GATTCCGACGAAGCGAAGGAAATC--AATGCGCGTATATTTGAGACAATGTATCACGCCG 112728 || || | ||| || | | || || || || || ||||| || || ||||| | Sbjct 96423 GAGTCTGCCGAGGC--CCGCACTCTGAACAAGCAGATCTTCGAGACCATCTACCACGCTG 96480 Query 112729 CTCTTGA--GGCGAGTTCGGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGG 112786 | | ||| | | || | ||| | || | || ||| | || |||| |||||| Sbjct 96481 C-CCTGACTGCCTCGTGC-GAGATTGCTCAAACCGAGGGTACTTACTCCACCTATGAGGG 96538 Query 112787 TTCTCCAGCTTCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGACCAAGCTTCA 112846 ||| || | || || || | || || || || |||| |||| || | || || | | Sbjct 96539 TTCGCCTGTATCTCAGGGTATCCTGCAGTTCGACATGT-GGAACGTTACCCCTAG--TGA 96595 Query 112847 C---TACGACTGGGACGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCT 112903 | | ||||||| | | |||||||||| |||||| || | || | || ||| || Sbjct 96596 CCTGTGGGACTGGGCCTCGCTCAAGGAACAGATCAAGCAGCACGGCGTGCGCAACTCGCT 96655 Query 112904 TTTGATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTT 112963 | |||| || |||||||| ||||| ||| | || ||| | || || || || ||||| Sbjct 96656 ACTCCTGGCTCCTATGCCAACTGCCTCGACCTCTCAGATCCTAGGCAACAACGAGTGCTT 96715 Query 112964 TGAACCCTACACGACGAACATCTA 112987 || || ||||| |||||||||| Sbjct 96716 CGAGCCTTACACCTCGAACATCTA 96739 >seq119 Length=69832 Score = 125 bits (138), Expect = 9e-24 Identities = 342/514 (67%), Gaps = 20/514 (4%) Strand=Plus/Minus Query 15878 GATCTTACGATCAAAGCGACCTGGGCGAAGGAGCGCGTCATCAAGGATATCAACGCGATT 15937 ||| | |||||| || ||||| || | | | ||| | ||| |||||||| ||||||| Sbjct 35428 GATGTGACGATCGAAACGACCAGGTCTCATCAACGCCTTATCTAGGATATCCGCGCGATT 35369 Query 15938 CGTTGCGGCGATGACAACAATACCTGTTT--CGTTATCAAAACCATCCATCTCTGTCAAA 15995 || | || | ||||| || ||| | || | | |||||||||||||| || | Sbjct 35368 GGTACCAGCCAGCACAACGAT--CTGCTCAGCGGTGTTGAAACCATCCATCTCGGTTAGG 35311 Query 15996 AGCTGGTTAATAGTTTGTTCCCGTTCATCATT--CGCTGGC-ATACCACCAGCACTGCGT 16052 | |||||| | || || || || || || ||| | | |||| | || | | || Sbjct 35310 ATCTGGTTCAGCGTCGACTCGCGCTCGTCGTTACCGCCGCCCATACGATTAG-AGTCGGT 35252 Query 16053 TGCTTTCCCAC----GGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCG 16108 | || || |||||| || || |||||||||||||||||||| || | ||| Sbjct 35251 TCTGGACCGACCAATGGCATCGATTTCGTCAATGAAGACGATGCATGGAGAGTTCTTGCG 35192 Query 16109 AGCGACTTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAA 16168 ||| |||| ||||| |||||||| || || ||||| ||||||||||||||||| Sbjct 35191 AGCTGTCGCAAACAGATCACGTACACGTGAGGGACCAACACCGACAAACATCTCCACAAA 35132 Query 16169 GTTTGCGGC-GGAACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGA 16227 | | | ||| | || ||| || || || || || ||| | || ||| | Sbjct 35131 CTCAGAACCACTCACACT-GAAGAAAGGCACTCCGGACTCGCCGGCAGTAGCCTTGGCCA 35073 Query 16228 GAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGC 16287 | || |||||||| ||||| || ||| | |||| |||||| || |||||||| || | Sbjct 35072 GCAGTGTCTTACCGGTACCGGGAGGACCAGACAGGATGGCACCGCGAGGAATCTTAGCAC 35013 Query 16288 C---ACTTCCAAAGTATCTCTCAGGTTGCTTAAGAAAATCCACAATCTCTTCCAATTCAT 16344 | || |||| | ||||||| | ||| || || | ||||| ||| | ||| Sbjct 35012 CAAGACGCACAAACT---TCTCAGGCTTCTTGAGGAACTGCACAAACTCCATGATTTCCA 34956 Query 16345 CTTTGGCGGCGTCAATCCCCTCAACATCGGTAAA 16378 | ||||| |||| || || | ||||| | ||| Sbjct 34955 CCTTGGCTTCGTCCATACCGGCGACATCAGCAAA 34922 >seq7 Length=77910 Score = 123 bits (136), Expect = 3e-23 Identities = 348/523 (67%), Gaps = 11/523 (2%) Strand=Plus/Plus Query 101816 TTGGACTGCTGAAGAGGTAGATCTCTCAAAGGATTTGGACGATTGGAAGAC---TCTAAA 101872 |||||| ||||| ||| | ||||| || |||||| | |||| ||||| | ||||| Sbjct 72562 TTGGACCGCTGAGGAGATTGATCTATCCAAGGATCTCCACGACTGGAACAACCGTCTAAC 72621 Query 101873 TGAAAATGAAAAGAAATTCATAAAATACATCCTGGCATTCTTTGCTGGGTCCGATGGAAT 101932 | | || | | ||||| |||||||||| |||||||||| || ||||| || Sbjct 72622 CAAGGACGAGCAATACTTCATCTCCCACATCCTGGCTTTCTTTGCTGCCTCTGATGGTAT 72681 Query 101933 TGTTTTTGAGAATATCAATAACAACTTTGCTGATGAGGTGCA-ATCCTCTGAAGCGAGAT 101991 ||| |||||| | | | || ||| |||||| || |||| | || || | | Sbjct 72682 TGTCAACGAGAATCTGGTTGAGCGTTTCTCTGGTGAGGTCCAGATCCCC-GAGGCTCGCT 72740 Query 101992 CTTTCTATGCGTATCAATGTCATAATGAA-ATGGTGCATGGGGAGACATACAGTAAACTC 102050 ||||| | || || | |||| ||| | | | || ||||| ||| | | Sbjct 72741 GCTTCTACG-GTTTCCAGATCATGATGGAGAACATCCACTCCGAGACCTACTCCCTATTG 72799 Query 102051 ATAGACAAGTATATTAAGGATGGTGCTGAGAAGAAGCAGCTCTTTGAAGCCATCCAAACA 102110 || || | || || ||||| |||| || | | || || | ||||| | || Sbjct 72800 ATCGATACTTACATCAAGGAGCCTGCTCAGCGCACATACCTGTTCAACGCCATTGACACC 72859 Query 102111 GTTCCATGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGG-TTTGATACAAAGTCGCG 102169 | || || || | || || |||||||| | |||||| |||| ||| || | Sbjct 72860 ATCCCCTGCATCCGCCGTAAGGCTGATTGGGCCCTTAAGTGGATTTGCGACAGAGAATCC 72919 Query 102170 TTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTC 102229 |||| | |||| ||| | || ||||| ||| ||||||||||||||||||||| | Sbjct 72920 A-CCTTCGGCCAGCGTCTCGTTGCCTTTGCTGCTGTCGAGGGTATCTTCTTCTCTGGTGC 72978 Query 102230 CTTCTGC-GCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCA 102288 ||| ||| |||| | ||||| ||||| ||||| ||||| ||||| |||||| | Sbjct 72979 CTT-TGCTTCTATCTTCTGGCTACGTAAGCGTGGTCTGATGCCTGGTCTGACCTTCTCTA 73037 Query 102289 ACGAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 102331 ||||||||||||| ||||| ||||| | ||| ||| ||||| Sbjct 73038 ACGAGCTTATCTCCCGTGATGAGGGTTTGCACACAGATTTTGC 73080 >seq67 Length=164805 Score = 89.7 bits (98), Expect = 6e-13 Identities = 167/243 (69%), Gaps = 2/243 (1%) Strand=Plus/Minus Query 176018 GCATCCTTACCACCCATGAGACGCGTACCAAACTGACCACACGGCTC-AAGAAGATTGAT 176076 ||||| |||||| ||||| | || || | ||||| || || ||| | ||||| Sbjct 30635 GCATCAGAACCACCGGCAAGACGAGATCCGAAGTTACCACTGGGTTCCAAGCA-ATTGAC 30577 Query 176077 ATTGTTTGAACCCATGTAGTCATTCGCCAACTTGACAATCGTGTCCGCGAGAGAGACTTC 176136 ||||| || |||| | ||| | ||||| ||| ||| || | | ||||| |||| Sbjct 30576 GTTGTTAGATCCCACGAAGTTCTGGGCCAAACTGATAATAGTCTGCTGCAGAGACGCTTC 30517 Query 176137 ACCGTGGTGGTACGCACTCTTCTCTGCGACAAATGCCGCCAACTGCGCCACTTTCATCTC 176196 |||||| ||||| ||| ||| | | |||| | | || |||| | || ||||| || Sbjct 30516 ACCGTGCTGGTAGGCAGTCTGACCAGAGACATAACCAGCTAACTCAACAACCTTCATATC 30457 Query 176197 ATCCTTGAGATTCTTGTGGAAACATGCGTACATAACCTTGCGTTGCGAAGGCTTGAGACC 176256 | || || ||| | | ||| || || || || ||||||||||| |||||||||||| Sbjct 30456 CTTCTGGATATTGCTCTTGAAGCAAGCATAAATGACCTTGCGTTGACCAGGCTTGAGACC 30397 Query 176257 ATC 176259 || Sbjct 30396 GTC 30394 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620738047043920