Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Davidsoniella_20virescens_20[genbank_20GCA_5F001513805.1_202016-01- 13] 561 sequences; 33,427,969 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq85 143 3e-29 seq119 114 2e-20 seq7 107 2e-18 >seq85 Length=153405 Score = 143 bits (158), Expect = 3e-29 Identities = 1100/1751 (63%), Gaps = 61/1751 (3%) Strand=Plus/Minus Query 109500 GTTCATCGACTGAGACTGATCGATGAATCGACCACGATCAGCCGCCATGT---CGATGAT 109556 ||||| |||||| ||||| |||||||| |||||||| || ||||| | | | | | Sbjct 96992 GTTCAGCGACTGCGACTGGTCGATGAAAGCGCCACGATCGGCAGCCATCTGCACAACGGT 96933 Query 109557 ACACTTTTGGCTAATTTCCCAGACAGTCTTGTACAAATTCTTGATATCATCGGGAATGTC 109616 || || | ||| |||||||| |||||||||| |||||| || |||| || | Sbjct 96932 ACGCT---GAGAAATCTCCCAGACGGTCTTGTACAGGGCCTTGATGTCGGCGGGGATATT 96876 Query 109617 CACGATGTTTTGAATAGAGCCACCAGCCTTCACCATGAGATCCTTCATCTCTTTCGACCA 109676 ||||||||| | || || | || | || | | |||||| | ||||| Sbjct 96875 AGGGATGTTTTGGACCGAACCGTTATCCGCAATGATACGGTTCTTCATGGTGTCGGACCA 96816 Query 109677 GAGACCGACCTTTTTGAGATCGT-CAACAAGATGCTTGTTGACCACGACAAATTCACCAG 109735 || || | | || || || ||| | ||| || || || ||||||| Sbjct 96815 CAGGCCAAGATCGACCAGGTCACGCAGCAACCAGGG-GTTAACAACCTGGAACTCACCAG 96757 Query 109736 CAAGTGTGCGTCGGAGGTAGATGTTAGTCGTGTAGGGTTCGAAACACTCATTGTTGCCTA 109795 | || || || |||||||||| | ||||| || ||||| ||||| |||||||||| Sbjct 96756 CCAGCACACGGCGCTGGTAGATGTTCGAGGTGTAAGGCTCGAAGCACTCGTTGTTGCCTA 96697 Query 109796 GGATTTGTGCAGTGGAAGCTGTGGGCATGGGAGCCATGAGAAGACTGTTTCGGAGACCCT 109855 |||| || | || || || || ||||| ||||||| ||| || ||| || | || | Sbjct 96696 GGATCTGAGAGGTCGAGGCAGTTGGCATAGGAGCCAGGAGTAGCGAGTTGCGCACGCCGT 96637 Query 109856 TCGTCTTTACCCGCTCACGCATTGCGTCCCAATCATAACGACCACTAAATTTAGTCTCAC 109915 | ||| | | | || | | | |||| || | | ||||| || Sbjct 96636 GCTGCTTGATCTGTTCCTTGAGCGAGGCCCAGTCCCACAGGTCACTAGGGGTAA------ 96583 Query 109916 CATCCCACATATCTGGTTGAAGTACACCCTCAGCAGCAGGAGAACCCTTGAAACTCTCGT 109975 | | |||||| || || || | ||||| || |||| ||||||| | | || Sbjct 96582 CGTTCCACATGTCGAACTGCAGGATACCCTGAGATACAGGCGAACCCTCATAGGTGGAGT 96523 Query 109976 ACGACCCCTCAACCTCGGCCAACTCGGATGAAGCCTCTAGTGCCGCATGATACATAGTCT 110035 | | ||||| | || | |||| | || || || || || || || || |||| Sbjct 96522 AAGTACCCTCGGTTTGAGCAATCTCGCACGAGGCAGTCAGGGCAGCGTGGTAGATGGTCT 96463 Query 110036 CAAAAATATGAGCATTCATGAG-GCGAGACTCTTCACAGTCGAAGGGAAGACCACAAAGA 110094 | || || || |||| ||| ||| | ||| || | ||||| || | | | | Sbjct 96462 CGAAGATCTGCTTGTTCA-GAGTGCGGGCCTCGGCAGACTCGAAAGGCATGCGT--AGGG 96406 Query 110095 ATA--AACACATCCGCTAGACCCTGAACACCGAGACCAATGGGGCGATGCTTCATGTTAG 110152 || || |||| ||||||||||| ||||| | ||||||||||||||| |||||| Sbjct 96405 CTAGGAAAGCATCGGCTAGACCCTGGACACCAACACCAATGGGGCGATGACGCATGTT-- 96348 Query 110153 AGC-GTCGAGCAGTTTCT---ACGGGGTAAAAGTTGCGGTCGATGACCCGATTGAGATTC 110208 || || | | || || || ||||| |||| ||||| | ||||| || || Sbjct 96347 -GCTGTTGTG-AGCCTCAGGCACAGGGTAGTGGTTGACATCGATAATGCGATTCAGGTTA 96290 Query 110209 TTCGTCACAGTCTTCGTGATTTCATGGAGTTTGTCGTAATCGAACGTTTTCGTCTCCT-T 110267 | || ||| ||||| || || || || | | ||||| || | || | | | | Sbjct 96289 CGCACGACCACCTTGGTGATCTCGTGCAGCTTCTGGAAATCGTAC--TCTCCTTTGTTGT 96232 Query 110268 ATT-GACATATTTGGGGAGAGCAATAGACGCAAGATTGCACACAGAAGTCTCGTCTTTGT 110326 | | |||| | || || || | || || || ||||| || | | ||| || Sbjct 96231 AGTCGACAAAGGATGGTAGGGCTAGCGAGGCTAGGTTGCATACGGCAACCTCATCGGGAG 96172 Query 110327 CGGTGTATTCCAAAATTTCCGTACACAAGTTGGAACTCTTAATGACACCCAAGTTCTTCT 110386 || ||| || | ||||| || || | ||||| || || || | ||| |||| Sbjct 96171 CGCAGTACTCGATGATTTCAGTGCATAGATTGGAGCTGCGGATAGTGCCTAGGTTTTTCT 96112 Query 110387 GATTCGATTTGGAGTTGCATGCATCCTTATAGAGCATGTATGGGGTACCAGTTTCCGTCT 110446 | || || |||||| || ||||| || |||||| ||||| | || || || |||| Sbjct 96111 GGTTGCTCTTCTTGTTGCAGGCGTCCTTGTACAGCATGAATGGGTTGCCGGTCTCGGTCT 96052 Query 110447 GTGACTTGAGAATGGCCTTCCATA-CATCGGCGGCGGGGACAGTTGCGTTAGCGA-GACC 110504 | | || ||||||||| | ||| | | || | ||| || || | || | | || Sbjct 96051 GGGCCTCGAGAATGGCGTACCACAGCTTCTG-GGCCTTGATGGTAA-GACGGCCACGGCC 95994 Query 110505 TTCCTCCTCGTACTTGGTGTACAAGTCCTCAAATTCCTGTCCGTACACATCAGAAAGACC 110564 ||| ||||||||| |||| |||| || |||| ||||| ||||| || || Sbjct 95993 TTCACTCTCGTACTTCTCATACAGAGCCTCGAACTCCTCGCCGTAGCAATCAGCTAGTCC 95934 Query 110565 CTTCGCCTTGTCGGGACAGAAGAGGGACCAATTTCCACCCTCCTCAACCCTCTTCATGAA 110624 || | || || | ||| | ||| || | || || || | ||||||||| Sbjct 95933 AGGGCACTCATTAGGGCACATGAGTGTCCAGTTGGCGTTCTTTTCGACACGCTTCATGAA 95874 Query 110625 CAGGTCAGGAATCCACATCGCCGAGAAAAGGTCACGGCAACGAGCCTCTTCATCACCTTG 110684 ||| || |||||||||| || ||| || |||||| |||| ||| || | || || Sbjct 95873 CAGATCGGGAATCCACAGTGCTAGGAACAGATCACGGGCACGAATCTCCTCCTTGCCGTG 95814 Query 110685 GTTGAGGCGTAGCTCCAAAAAGTCCATGATATCCGAGTGCCATGGTTCGAGATAGACAGC 110744 ||| ||| || || | || || | | ||| | |||||| || || || || | || Sbjct 95813 GTTCTTGCGCAGATCAAGGAACTCGAACACATCGGCGTGCCACGGCTCCAGGTAAATGGC 95754 Query 110745 GATGGATCC------CTTACGACGACCCGCCTGGTTAACATAGCGTGCTGTGGCATTGAA 110798 | || || ||| || || |||||| || ||||| || ||| ||||| Sbjct 95753 AAAGGCACCGGGGCGCTTGTTACCAC---CCTGGTCGACGTAGCGGGCAGTGTTGTTGAA 95697 Query 110799 GACCCTGAGCATAGGAATAATTCCATCGGATTGACCATTTGTACCCCTAATTCTGGACTT 110858 ||| | ||||| |||| ||| || | || || || || || ||| || Sbjct 95696 GACACGCAGCATGGGAACAATGCCGTTAGACGTGCCGTTGGTGCCAGCAATGTACGAGCC 95637 Query 110859 ATTGGCACGAATGTCGTGGATATGCATACCAATACCACCCGCCCACTTACTAATTTGTGC 110918 | ||||||| || ||||| | || ||| ||||| || ||| ||| || || Sbjct 95636 AGTGGCACGGATACGGTGGACGTTCAGACCGATACCGCCGGCCATCTTGGAGATCATAGC 95577 Query 110919 AC-ACTCTGTGAGTGTACCATAAATACCATCAATCGAATCTGCCTTGTTGGCAATTAGAA 110977 || | ||| | || ||| | || ||||||||||| || |||| | ||| ||| | Sbjct 95576 ACAAGTCT-TCAGCGTATCGTAGATACCATCAATGCTGTCGTCCTTCATATCAACTAGGA 95518 Query 110978 AGCAAGAAGACATCTGAGGACGAGGCGTTCCCGCATTGAAGAGTGTAGGTGTCGCATGAA 111037 |||| || || | ||| | | || || || || ||||| || || || | || || Sbjct 95517 AGCACGACGATAGCTGGGCCTGCGGTGTGCCAGCGTTGAATAGCGTGGGCGAGGCGTGTG 95458 Query 111038 TGAACAGACCTTG--GGACATCTTGTTGTATGTGTCGAGTGCGGAGGGT--ACATCTTTA 111093 ||| ||| |||| ||||| | |||||| || |||| || | ||| || | | Sbjct 95457 TGA--AGAACTTGCTTGACATGTAGTTGTAAGTCTCGA--GCACACGGTCAACGCGGTCA 95402 Query 111094 CCGTGAATACCAATGGCAACTCGCATGAACATATATTGAGGCGTTTCGATTAGCTTTCCA 111153 || || |||| ||| || ||||||| ||| | || || |||| | ||| || Sbjct 95401 CCCCAGATGCCAACGGCCACACGCATGATCATGTGCTGCGGACGCTCGACAATCTTGCCG 95342 Query 111154 TCAACACGCT---GAAGGTAACTCTTCTCTAGGGTCTTGAGACCAAAGTATCCAAAATCG 111210 || | ||| | ||||| |||||||||||||| |||||||| | | | Sbjct 95341 TCTA---GCTTAAGCAGGTACGAACGCTCTAGGGTCTTGAAGCCAAAGTACTGGTAGTTG 95285 Query 111211 AAATCACGATC 111221 || |||||||| Sbjct 95284 AAGTCACGATC 95274 >seq119 Length=69832 Score = 114 bits (126), Expect = 2e-20 Identities = 336/505 (67%), Gaps = 26/505 (5%) Strand=Plus/Minus Query 11502 ACGATCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTTTGTAGC 11561 ||||||||||||||| || | | | || | ||| || ||||| | || || ||| | Sbjct 35422 ACGATCGAAACGACCAGGTCTCATCAACGCCTTATCTAGGATATCCGCGCGATTGGTACC 35363 Query 11562 GGCAATGACTACAATGCCAGTCTCAT---TGTCGAAACCGTCCATTTCTGTGAGAAGCTG 11618 || | || || || | | |||| ||| |||||| ||||| || || || | ||| Sbjct 35362 AGCCAGCACAACGAT--CTG-CTCAGCGGTGTTGAAACCATCCATCTCGGTTAGGATCTG 35306 Query 11619 GTTGATCGTCTGTTCACGCTCATCGTT---GGAGGGCATACCACCTGCCGAACGCTTCTT 11675 ||| | |||| || ||||| ||||| | | ||||| | | || |||| Sbjct 35305 GTTCAGCGTCGACTCGCGCTCGTCGTTACCGCCGCCCATACGATTAGAGT--CGGTTCTG 35248 Query 11676 -ACCGACA----GCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGTGCC 11730 |||||| || || || || || ||||| ||||| || || ||| || || Sbjct 35247 GACCGACCAATGGCATCGATTTCGTCAATGAAGACGATGCATGGAGAGTTCTTGCGAGC- 35189 Query 11731 TGTTCGAAA-AGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGTT 11789 ||| ||| || ||||||||||| | |||||||| || |||||||| || || | Sbjct 35188 TGTCGCAAACAGATCACGTACACGTGAGGGACCAACACCGACAAACATCTCCACAAACTC 35129 Query 11790 TGCGGCAGA-ACACTGAATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAGGA 11848 | || |||||||| ||| || || ||||| || || | || || || | Sbjct 35128 AGAACCACTCACACTGAA-GAAAGGCACTCCGGACTCGCCGGCAGTAGCCTTGGCCAGCA 35070 Query 11849 GAGTCTTACCCGTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGGCACCAC 11908 | |||||||| ||||| || | ||||| || | ||| || || || ||||| |||||| Sbjct 35069 GTGTCTTACCGGTACCGGGAGGACCAGACAGGATGGCACCGCGAGGAATCTTAGCACCAA 35010 Query 11909 TTC---CAAAGTAGCGCTCAGGCTTCTTGAGGAAGTCCACAATCTCCTCAAGTTCCTCCT 11965 | |||| | |||||||||||||||||| | ||||| |||| | |||| ||| Sbjct 35009 GACGCACAAACTT---CTCAGGCTTCTTGAGGAACTGCACAAACTCCATGATTTCCACCT 34953 Query 11966 TGGCGGAGTCGATACCCTCAACATC 11990 |||| ||| ||||| | ||||| Sbjct 34952 TGGCTTCGTCCATACCGGCGACATC 34928 >seq7 Length=77910 Score = 107 bits (118), Expect = 2e-18 Identities = 384/591 (65%), Gaps = 11/591 (2%) Strand=Plus/Minus Query 119208 TAGTCACCCACCCTCTTTTCGAAGAAATTCGTCTTACCATCGAGTGAGATGTTTTCCATA 119267 |||||||| || | ||| || ||||| || ||||| || | || || ||||| ||||| Sbjct 73368 TAGTCACCAACACGCTTCTCAAAGAAGTTGGTCTTGCCTCCCAGAGAAATGTTCTCCATG 73309 Query 119268 AAGTCAAAAGGATTTTTGGA--GTTCCAGATTGGTGGTTGACCAACTTGTTTCAGAAGAC 119325 ||||| || || ||| | | | | || ||| | |||| |||| ||| |||| Sbjct 73308 AAGTCGAAGGGGTTTGTAGCACGGTACACTTTG-TCGTTG-CCAAGGGCAACCAGGAGAC 73251 Query 119326 GATCGGAGACATACTCGATATATTCGGACATCTTTTCCGAATTCATACCTATGAGATTAC 119385 | || | || |||| || || | |||| || | ||||| |||| ||| | Sbjct 73250 GGTCAGCAACGAACTCAATGTACTGCTTCATCAGATCGGCGTTCATGCCTAGCAGACCGC 73191 Query 119386 ACGGGAGAGCATCGAGGATGAAGTTCTTCTCGATCTCCACAGCTTCTTTCACGATGGAGT 119445 | || ||||| || | ||| | ||||||||| | ||||| || | | || | Sbjct 73190 AAGGAAGAGCCTCAGTTAAGAACTCCTTCTCGATGACAACAGCATCAGTGATAATCTTTT 73131 Query 119446 -GAATAGTTTCTGTCGATGGTTTGTTTCTCAAGAGTTTAAACAACTCTACGGCAAATTCT 119504 || |||| || | | || ||| ||||| | |||||| ||||| ||| Sbjct 73130 CGACCAGTTCCTTGCTA-GGACGGTTGTTCAAGTGCGAGAACAACAAGCAAGCAAAATCT 73072 Query 119505 TGATGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCATGAGT 119564 || | || ||||| || ||||| ||||| ||| |||| || |||||||| || Sbjct 73071 GTGTGCAAACCCTCATCACGGGAGATAAGCTCGTTAGAGAAGGTCAGACCAGGCATCAGA 73012 Query 119565 CCTCTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCACA 119624 || | || |||||| ||||| | | ||| ||||| |||||||| ||||| ||| Sbjct 73011 CCACGCTTACGTAGCCAGAAGATAGAAGCAAAGGCACCAGAGAAGAAGATACCCTCGACA 72952 Query 119625 CAGGCGAAAGCGAATAGACGCTCAGCAAAAGGTCGAGACT-TGTCGAA---CCACTTGAG 119680 || || || | ||||||| || ||||| || || ||||| | |||||| || Sbjct 72951 GCAGCAAAGGCAACGAGACGCTG-GCCGAAGGTGGATTCTCTGTCGCAAATCCACTTAAG 72893 Query 119681 AGCCCAGTTGGCCTTACGCTCTATGCAGGGGACAGTTTGGATGGCTTCGAAAAGTTGCTT 119740 ||||| | |||||||| |||||||||| || | ||||| | ||| || | | Sbjct 72892 GGCCCAATCAGCCTTACGGCGGATGCAGGGGATGGTGTCAATGGCGTTGAACAGGTATGT 72833 Query 119741 CTTTTCAGCACCATCCTTAATATATTTATCAATGAGTTTAGAGTAGGTCTC 119791 | |||| ||||| || || |||| || | | ||||||||||| Sbjct 72832 GCGCTGAGCAGGCTCCTTGATGTAAGTATCGATCAATAGGGAGTAGGTCTC 72782 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588971869805800