Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Davidsoniella_20virescens_20[genbank_20GCA_5F001513805.1_202016-01-
13] 561 sequences; 33,427,969 total letters
Query= NC_014767.1
Length=184095
Score E
Sequences producing significant alignments: (Bits) Value
seq85 143 3e-29
seq119 114 2e-20
seq7 107 2e-18
>seq85
Length=153405
Score = 143 bits (158), Expect = 3e-29
Identities = 1100/1751 (63%), Gaps = 61/1751 (3%)
Strand=Plus/Minus
Query 109500 GTTCATCGACTGAGACTGATCGATGAATCGACCACGATCAGCCGCCATGT---CGATGAT 109556
||||| |||||| ||||| |||||||| |||||||| || ||||| | | | | |
Sbjct 96992 GTTCAGCGACTGCGACTGGTCGATGAAAGCGCCACGATCGGCAGCCATCTGCACAACGGT 96933
Query 109557 ACACTTTTGGCTAATTTCCCAGACAGTCTTGTACAAATTCTTGATATCATCGGGAATGTC 109616
|| || | ||| |||||||| |||||||||| |||||| || |||| || |
Sbjct 96932 ACGCT---GAGAAATCTCCCAGACGGTCTTGTACAGGGCCTTGATGTCGGCGGGGATATT 96876
Query 109617 CACGATGTTTTGAATAGAGCCACCAGCCTTCACCATGAGATCCTTCATCTCTTTCGACCA 109676
||||||||| | || || | || | || | | |||||| | |||||
Sbjct 96875 AGGGATGTTTTGGACCGAACCGTTATCCGCAATGATACGGTTCTTCATGGTGTCGGACCA 96816
Query 109677 GAGACCGACCTTTTTGAGATCGT-CAACAAGATGCTTGTTGACCACGACAAATTCACCAG 109735
|| || | | || || || ||| | ||| || || || |||||||
Sbjct 96815 CAGGCCAAGATCGACCAGGTCACGCAGCAACCAGGG-GTTAACAACCTGGAACTCACCAG 96757
Query 109736 CAAGTGTGCGTCGGAGGTAGATGTTAGTCGTGTAGGGTTCGAAACACTCATTGTTGCCTA 109795
| || || || |||||||||| | ||||| || ||||| ||||| ||||||||||
Sbjct 96756 CCAGCACACGGCGCTGGTAGATGTTCGAGGTGTAAGGCTCGAAGCACTCGTTGTTGCCTA 96697
Query 109796 GGATTTGTGCAGTGGAAGCTGTGGGCATGGGAGCCATGAGAAGACTGTTTCGGAGACCCT 109855
|||| || | || || || || ||||| ||||||| ||| || ||| || | || |
Sbjct 96696 GGATCTGAGAGGTCGAGGCAGTTGGCATAGGAGCCAGGAGTAGCGAGTTGCGCACGCCGT 96637
Query 109856 TCGTCTTTACCCGCTCACGCATTGCGTCCCAATCATAACGACCACTAAATTTAGTCTCAC 109915
| ||| | | | || | | | |||| || | | ||||| ||
Sbjct 96636 GCTGCTTGATCTGTTCCTTGAGCGAGGCCCAGTCCCACAGGTCACTAGGGGTAA------ 96583
Query 109916 CATCCCACATATCTGGTTGAAGTACACCCTCAGCAGCAGGAGAACCCTTGAAACTCTCGT 109975
| | |||||| || || || | ||||| || |||| ||||||| | | ||
Sbjct 96582 CGTTCCACATGTCGAACTGCAGGATACCCTGAGATACAGGCGAACCCTCATAGGTGGAGT 96523
Query 109976 ACGACCCCTCAACCTCGGCCAACTCGGATGAAGCCTCTAGTGCCGCATGATACATAGTCT 110035
| | ||||| | || | |||| | || || || || || || || || ||||
Sbjct 96522 AAGTACCCTCGGTTTGAGCAATCTCGCACGAGGCAGTCAGGGCAGCGTGGTAGATGGTCT 96463
Query 110036 CAAAAATATGAGCATTCATGAG-GCGAGACTCTTCACAGTCGAAGGGAAGACCACAAAGA 110094
| || || || |||| ||| ||| | ||| || | ||||| || | | | |
Sbjct 96462 CGAAGATCTGCTTGTTCA-GAGTGCGGGCCTCGGCAGACTCGAAAGGCATGCGT--AGGG 96406
Query 110095 ATA--AACACATCCGCTAGACCCTGAACACCGAGACCAATGGGGCGATGCTTCATGTTAG 110152
|| || |||| ||||||||||| ||||| | ||||||||||||||| ||||||
Sbjct 96405 CTAGGAAAGCATCGGCTAGACCCTGGACACCAACACCAATGGGGCGATGACGCATGTT-- 96348
Query 110153 AGC-GTCGAGCAGTTTCT---ACGGGGTAAAAGTTGCGGTCGATGACCCGATTGAGATTC 110208
|| || | | || || || ||||| |||| ||||| | ||||| || ||
Sbjct 96347 -GCTGTTGTG-AGCCTCAGGCACAGGGTAGTGGTTGACATCGATAATGCGATTCAGGTTA 96290
Query 110209 TTCGTCACAGTCTTCGTGATTTCATGGAGTTTGTCGTAATCGAACGTTTTCGTCTCCT-T 110267
| || ||| ||||| || || || || | | ||||| || | || | | | |
Sbjct 96289 CGCACGACCACCTTGGTGATCTCGTGCAGCTTCTGGAAATCGTAC--TCTCCTTTGTTGT 96232
Query 110268 ATT-GACATATTTGGGGAGAGCAATAGACGCAAGATTGCACACAGAAGTCTCGTCTTTGT 110326
| | |||| | || || || | || || || ||||| || | | ||| ||
Sbjct 96231 AGTCGACAAAGGATGGTAGGGCTAGCGAGGCTAGGTTGCATACGGCAACCTCATCGGGAG 96172
Query 110327 CGGTGTATTCCAAAATTTCCGTACACAAGTTGGAACTCTTAATGACACCCAAGTTCTTCT 110386
|| ||| || | ||||| || || | ||||| || || || | ||| ||||
Sbjct 96171 CGCAGTACTCGATGATTTCAGTGCATAGATTGGAGCTGCGGATAGTGCCTAGGTTTTTCT 96112
Query 110387 GATTCGATTTGGAGTTGCATGCATCCTTATAGAGCATGTATGGGGTACCAGTTTCCGTCT 110446
| || || |||||| || ||||| || |||||| ||||| | || || || ||||
Sbjct 96111 GGTTGCTCTTCTTGTTGCAGGCGTCCTTGTACAGCATGAATGGGTTGCCGGTCTCGGTCT 96052
Query 110447 GTGACTTGAGAATGGCCTTCCATA-CATCGGCGGCGGGGACAGTTGCGTTAGCGA-GACC 110504
| | || ||||||||| | ||| | | || | ||| || || | || | | ||
Sbjct 96051 GGGCCTCGAGAATGGCGTACCACAGCTTCTG-GGCCTTGATGGTAA-GACGGCCACGGCC 95994
Query 110505 TTCCTCCTCGTACTTGGTGTACAAGTCCTCAAATTCCTGTCCGTACACATCAGAAAGACC 110564
||| ||||||||| |||| |||| || |||| ||||| ||||| || ||
Sbjct 95993 TTCACTCTCGTACTTCTCATACAGAGCCTCGAACTCCTCGCCGTAGCAATCAGCTAGTCC 95934
Query 110565 CTTCGCCTTGTCGGGACAGAAGAGGGACCAATTTCCACCCTCCTCAACCCTCTTCATGAA 110624
|| | || || | ||| | ||| || | || || || | |||||||||
Sbjct 95933 AGGGCACTCATTAGGGCACATGAGTGTCCAGTTGGCGTTCTTTTCGACACGCTTCATGAA 95874
Query 110625 CAGGTCAGGAATCCACATCGCCGAGAAAAGGTCACGGCAACGAGCCTCTTCATCACCTTG 110684
||| || |||||||||| || ||| || |||||| |||| ||| || | || ||
Sbjct 95873 CAGATCGGGAATCCACAGTGCTAGGAACAGATCACGGGCACGAATCTCCTCCTTGCCGTG 95814
Query 110685 GTTGAGGCGTAGCTCCAAAAAGTCCATGATATCCGAGTGCCATGGTTCGAGATAGACAGC 110744
||| ||| || || | || || | | ||| | |||||| || || || || | ||
Sbjct 95813 GTTCTTGCGCAGATCAAGGAACTCGAACACATCGGCGTGCCACGGCTCCAGGTAAATGGC 95754
Query 110745 GATGGATCC------CTTACGACGACCCGCCTGGTTAACATAGCGTGCTGTGGCATTGAA 110798
| || || ||| || || |||||| || ||||| || ||| |||||
Sbjct 95753 AAAGGCACCGGGGCGCTTGTTACCAC---CCTGGTCGACGTAGCGGGCAGTGTTGTTGAA 95697
Query 110799 GACCCTGAGCATAGGAATAATTCCATCGGATTGACCATTTGTACCCCTAATTCTGGACTT 110858
||| | ||||| |||| ||| || | || || || || || ||| ||
Sbjct 95696 GACACGCAGCATGGGAACAATGCCGTTAGACGTGCCGTTGGTGCCAGCAATGTACGAGCC 95637
Query 110859 ATTGGCACGAATGTCGTGGATATGCATACCAATACCACCCGCCCACTTACTAATTTGTGC 110918
| ||||||| || ||||| | || ||| ||||| || ||| ||| || ||
Sbjct 95636 AGTGGCACGGATACGGTGGACGTTCAGACCGATACCGCCGGCCATCTTGGAGATCATAGC 95577
Query 110919 AC-ACTCTGTGAGTGTACCATAAATACCATCAATCGAATCTGCCTTGTTGGCAATTAGAA 110977
|| | ||| | || ||| | || ||||||||||| || |||| | ||| ||| |
Sbjct 95576 ACAAGTCT-TCAGCGTATCGTAGATACCATCAATGCTGTCGTCCTTCATATCAACTAGGA 95518
Query 110978 AGCAAGAAGACATCTGAGGACGAGGCGTTCCCGCATTGAAGAGTGTAGGTGTCGCATGAA 111037
|||| || || | ||| | | || || || || ||||| || || || | || ||
Sbjct 95517 AGCACGACGATAGCTGGGCCTGCGGTGTGCCAGCGTTGAATAGCGTGGGCGAGGCGTGTG 95458
Query 111038 TGAACAGACCTTG--GGACATCTTGTTGTATGTGTCGAGTGCGGAGGGT--ACATCTTTA 111093
||| ||| |||| ||||| | |||||| || |||| || | ||| || | |
Sbjct 95457 TGA--AGAACTTGCTTGACATGTAGTTGTAAGTCTCGA--GCACACGGTCAACGCGGTCA 95402
Query 111094 CCGTGAATACCAATGGCAACTCGCATGAACATATATTGAGGCGTTTCGATTAGCTTTCCA 111153
|| || |||| ||| || ||||||| ||| | || || |||| | ||| ||
Sbjct 95401 CCCCAGATGCCAACGGCCACACGCATGATCATGTGCTGCGGACGCTCGACAATCTTGCCG 95342
Query 111154 TCAACACGCT---GAAGGTAACTCTTCTCTAGGGTCTTGAGACCAAAGTATCCAAAATCG 111210
|| | ||| | ||||| |||||||||||||| |||||||| | | |
Sbjct 95341 TCTA---GCTTAAGCAGGTACGAACGCTCTAGGGTCTTGAAGCCAAAGTACTGGTAGTTG 95285
Query 111211 AAATCACGATC 111221
|| ||||||||
Sbjct 95284 AAGTCACGATC 95274
>seq119
Length=69832
Score = 114 bits (126), Expect = 2e-20
Identities = 336/505 (67%), Gaps = 26/505 (5%)
Strand=Plus/Minus
Query 11502 ACGATCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTTTGTAGC 11561
||||||||||||||| || | | | || | ||| || ||||| | || || ||| |
Sbjct 35422 ACGATCGAAACGACCAGGTCTCATCAACGCCTTATCTAGGATATCCGCGCGATTGGTACC 35363
Query 11562 GGCAATGACTACAATGCCAGTCTCAT---TGTCGAAACCGTCCATTTCTGTGAGAAGCTG 11618
|| | || || || | | |||| ||| |||||| ||||| || || || | |||
Sbjct 35362 AGCCAGCACAACGAT--CTG-CTCAGCGGTGTTGAAACCATCCATCTCGGTTAGGATCTG 35306
Query 11619 GTTGATCGTCTGTTCACGCTCATCGTT---GGAGGGCATACCACCTGCCGAACGCTTCTT 11675
||| | |||| || ||||| ||||| | | ||||| | | || ||||
Sbjct 35305 GTTCAGCGTCGACTCGCGCTCGTCGTTACCGCCGCCCATACGATTAGAGT--CGGTTCTG 35248
Query 11676 -ACCGACA----GCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGTGCC 11730
|||||| || || || || || ||||| ||||| || || ||| || ||
Sbjct 35247 GACCGACCAATGGCATCGATTTCGTCAATGAAGACGATGCATGGAGAGTTCTTGCGAGC- 35189
Query 11731 TGTTCGAAA-AGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGTT 11789
||| ||| || ||||||||||| | |||||||| || |||||||| || || |
Sbjct 35188 TGTCGCAAACAGATCACGTACACGTGAGGGACCAACACCGACAAACATCTCCACAAACTC 35129
Query 11790 TGCGGCAGA-ACACTGAATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAGGA 11848
| || |||||||| ||| || || ||||| || || | || || || |
Sbjct 35128 AGAACCACTCACACTGAA-GAAAGGCACTCCGGACTCGCCGGCAGTAGCCTTGGCCAGCA 35070
Query 11849 GAGTCTTACCCGTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGGCACCAC 11908
| |||||||| ||||| || | ||||| || | ||| || || || ||||| ||||||
Sbjct 35069 GTGTCTTACCGGTACCGGGAGGACCAGACAGGATGGCACCGCGAGGAATCTTAGCACCAA 35010
Query 11909 TTC---CAAAGTAGCGCTCAGGCTTCTTGAGGAAGTCCACAATCTCCTCAAGTTCCTCCT 11965
| |||| | |||||||||||||||||| | ||||| |||| | |||| |||
Sbjct 35009 GACGCACAAACTT---CTCAGGCTTCTTGAGGAACTGCACAAACTCCATGATTTCCACCT 34953
Query 11966 TGGCGGAGTCGATACCCTCAACATC 11990
|||| ||| ||||| | |||||
Sbjct 34952 TGGCTTCGTCCATACCGGCGACATC 34928
>seq7
Length=77910
Score = 107 bits (118), Expect = 2e-18
Identities = 384/591 (65%), Gaps = 11/591 (2%)
Strand=Plus/Minus
Query 119208 TAGTCACCCACCCTCTTTTCGAAGAAATTCGTCTTACCATCGAGTGAGATGTTTTCCATA 119267
|||||||| || | ||| || ||||| || ||||| || | || || ||||| |||||
Sbjct 73368 TAGTCACCAACACGCTTCTCAAAGAAGTTGGTCTTGCCTCCCAGAGAAATGTTCTCCATG 73309
Query 119268 AAGTCAAAAGGATTTTTGGA--GTTCCAGATTGGTGGTTGACCAACTTGTTTCAGAAGAC 119325
||||| || || ||| | | | | || ||| | |||| |||| ||| ||||
Sbjct 73308 AAGTCGAAGGGGTTTGTAGCACGGTACACTTTG-TCGTTG-CCAAGGGCAACCAGGAGAC 73251
Query 119326 GATCGGAGACATACTCGATATATTCGGACATCTTTTCCGAATTCATACCTATGAGATTAC 119385
| || | || |||| || || | |||| || | ||||| |||| ||| |
Sbjct 73250 GGTCAGCAACGAACTCAATGTACTGCTTCATCAGATCGGCGTTCATGCCTAGCAGACCGC 73191
Query 119386 ACGGGAGAGCATCGAGGATGAAGTTCTTCTCGATCTCCACAGCTTCTTTCACGATGGAGT 119445
| || ||||| || | ||| | ||||||||| | ||||| || | | || |
Sbjct 73190 AAGGAAGAGCCTCAGTTAAGAACTCCTTCTCGATGACAACAGCATCAGTGATAATCTTTT 73131
Query 119446 -GAATAGTTTCTGTCGATGGTTTGTTTCTCAAGAGTTTAAACAACTCTACGGCAAATTCT 119504
|| |||| || | | || ||| ||||| | |||||| ||||| |||
Sbjct 73130 CGACCAGTTCCTTGCTA-GGACGGTTGTTCAAGTGCGAGAACAACAAGCAAGCAAAATCT 73072
Query 119505 TGATGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCATGAGT 119564
|| | || ||||| || ||||| ||||| ||| |||| || |||||||| ||
Sbjct 73071 GTGTGCAAACCCTCATCACGGGAGATAAGCTCGTTAGAGAAGGTCAGACCAGGCATCAGA 73012
Query 119565 CCTCTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCACA 119624
|| | || |||||| ||||| | | ||| ||||| |||||||| ||||| |||
Sbjct 73011 CCACGCTTACGTAGCCAGAAGATAGAAGCAAAGGCACCAGAGAAGAAGATACCCTCGACA 72952
Query 119625 CAGGCGAAAGCGAATAGACGCTCAGCAAAAGGTCGAGACT-TGTCGAA---CCACTTGAG 119680
|| || || | ||||||| || ||||| || || ||||| | |||||| ||
Sbjct 72951 GCAGCAAAGGCAACGAGACGCTG-GCCGAAGGTGGATTCTCTGTCGCAAATCCACTTAAG 72893
Query 119681 AGCCCAGTTGGCCTTACGCTCTATGCAGGGGACAGTTTGGATGGCTTCGAAAAGTTGCTT 119740
||||| | |||||||| |||||||||| || | ||||| | ||| || | |
Sbjct 72892 GGCCCAATCAGCCTTACGGCGGATGCAGGGGATGGTGTCAATGGCGTTGAACAGGTATGT 72833
Query 119741 CTTTTCAGCACCATCCTTAATATATTTATCAATGAGTTTAGAGTAGGTCTC 119791
| |||| ||||| || || |||| || | | |||||||||||
Sbjct 72832 GCGCTGAGCAGGCTCCTTGATGTAAGTATCGATCAATAGGGAGTAGGTCTC 72782
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 588971869805800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |