Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Davidsoniella_20virescens_20[genbank_20GCA_5F001513805.1_202016-01-
13] 561 sequences; 33,427,969 total letters
Query= NC_014789.1
Length=184409
Score E
Sequences producing significant alignments: (Bits) Value
seq7 107 2e-18
seq119 102 1e-16
>seq7
Length=77910
Score = 107 bits (118), Expect = 2e-18
Identities = 526/821 (64%), Gaps = 31/821 (4%)
Strand=Plus/Minus
Query 116986 TAGTCCCCAACTCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 117045
||||| ||||| ||||||||||||||||||||||| || | || |||||| |||||
Sbjct 73368 TAGTCACCAACACGCTTCTCAAAGAAGTTGGTCTTGCCTCCCAGAGAAATGTTCTCCATG 73309
Query 117046 AAGTCAAATGGATTCTTCGC--GTTCCAAATGG--GTGGC--ACCCCAACTTGTTTGAGG 117099
||||| || || || | || | | || | | || || | |||| |||
Sbjct 73308 AAGTCGAAGGGGTTTGTAGCACGGTACACTTTGTCGTTGCCAAGGGCAACC------AGG 73255
Query 117100 AGACGATCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGA 117159
||||| || | || |||||||||||| |||| || | |||||| || | |||
Sbjct 73254 AGACGGTCAGCAACGAACTCAATGTACTGCTTCATCAGATCGGCGTTCATGCCTAGCAGA 73195
Query 117160 TTACATGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATG 117219
|| || || || || | |||| | ||||| || |||| || || | | ||
Sbjct 73194 CCGCAAGGAAGAGCCTCAGTTAAGAACTCCTTCTCGATGACAACAGCATCAGTGATAATC 73135
Query 117220 GCGTGGATAGTTTCGGTAGTGGGTCTATTACGCAAAGTCTTGAAGAGCTCCACGGCAAAC 117279
| || ||| | | || | || ||| | ||| | | |||||
Sbjct 73134 TTTTCGACCAGTTCCTTGCTAGGACGGTTGTTCAAGTGCGAGAACAACAAGCAAGCAAAA 73075
Query 117280 TCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATG 117339
|| ||| | ||||||||| ||||| ||||| || || |||||| || || |||||
Sbjct 73074 TCTGTGTGCAAACCCTCATCACGGGAGATAAGCTCGTTAGAGAAGGTCAGACCAGGCATC 73015
Query 117340 AGACCCCGCTTCTTCAACCAATAAATAGC-GCAGAATGACCCGGAGAAGAAGATACCCTC 117398
||||| ||||| | ||| | |||| ||| || | || |||||||||||||||||
Sbjct 73014 AGACCACGCTTACGTAGCCAGAAGATAGAAGCA-AAGGCACCAGAGAAGAAGATACCCTC 72956
Query 117399 CACACACGCAAACGCAAAAAGGCGCTCGGCGAAGGAGCGAGACTTTGTGTCAAA-CCATT 117457
||| ||||| |||| || |||| | |||||| | || || ||| |||| ||| |
Sbjct 72955 GACAGCAGCAAAGGCAACGAGACGCTGGCCGAAGGTG-GATTCTCTGTCGCAAATCCACT 72897
Query 117458 TCATTGCCCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGCTT----CAAAT 117513
| | ||||| | ||||| || || || | || | ||||| | || |
Sbjct 72896 TAAGGGCCCAATCAGCCTTACGGCGGATGCAGGGGATGGTGTCAATGGCGTTGAACAGGT 72837
Query 117514 AACTGCTTCTTTTCAGATCCATCCTTAATGTATTTGTCAATCAATTTTGAATATGTTTCG 117573
| ||| || ||| ||||| ||||| | || |||||| || || || |||
Sbjct 72836 ATGTGC-GCTGAGCAG---GCTCCTTGATGTAAGTATCGATCAATAGGGAGTAGGTCTCG 72781
Query 117574 CCATGAACCAT-TTCATTATGGCATTGATATGCGTAGAATGAGCGCGCTTCGCTTATCTG 117632
|| | | | ||| ||| | || | ||||||| |||| || ||| |||||
Sbjct 72780 GAGTGGATGTTCTCCATCATGATCTGGA-AACCGTAGAAGCAGCGAGCCTCGGGGATCTG 72722
Query 117633 CACTTCATCCGCAAAATTGTTATTGATATTCTCAAAAACAATTCCATCGGACCCAGCAAA 117692
|| ||| | | ||| | | | |||||| ||||| ||||| || |||||||
Sbjct 72721 GACCTCACCAGAGAAACGCTCAACCAGATTCTCGTTGACAATACCATCAGAGGCAGCAAA 72662
Query 117693 GAATGCCAGGATGT---ACTTTATGAATTTCTTTTCATT-TTCATTCAGGGTCTTCCAGT 117748
||| |||||||||| | | | | ||| || || || | | | || | |||||||
Sbjct 72661 GAAAGCCAGGATGTGGGAGATGAAGTATTGCTCGTCCTTGGTTAGAC-GGTTGTTCCAGT 72603
Query 117749 CGTCAAGATCTTTGGACAAATCAACTTCTTCCGCAGTCCAA 117789
||| ||||| ||||| | ||||| || || || ||||||
Sbjct 72602 CGTGGAGATCCTTGGATAGATCAATCTCCTCAGCGGTCCAA 72562
>seq119
Length=69832
Score = 102 bits (112), Expect = 1e-16
Identities = 337/514 (66%), Gaps = 20/514 (4%)
Strand=Plus/Minus
Query 9185 GATCTTACGATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATT 9244
||| | |||||| || ||||| || | | | ||| | ||| |||||||| |||||||
Sbjct 35428 GATGTGACGATCGAAACGACCAGGTCTCATCAACGCCTTATCTAGGATATCCGCGCGATT 35369
Query 9245 CGTCGCGGCGATGACAACAATACCTGTTT--CATTATCAAAACCATCCATCTCTGTCAAA 9302
|| | || | ||||| || ||| | | | | |||||||||||||| || |
Sbjct 35368 GGTACCAGCCAGCACAACGAT--CTGCTCAGCGGTGTTGAAACCATCCATCTCGGTTAGG 35311
Query 9303 AGTTGGTTAATAGTTTGTTCCCGTTCATCATT--CGCTGGC-ATACCACCAGCACTGCGT 9359
| ||||| | || || || || || || ||| | | |||| | || | | ||
Sbjct 35310 ATCTGGTTCAGCGTCGACTCGCGCTCGTCGTTACCGCCGCCCATACGATTAG-AGTCGGT 35252
Query 9360 TGCTTTCCCAC----GGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCG 9415
| || || |||||| || || ||||||||||| || ||||| || | |||
Sbjct 35251 TCTGGACCGACCAATGGCATCGATTTCGTCAATGAAGACGATGCATGGAGAGTTCTTGCG 35192
Query 9416 GGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAA 9475
|| | |||| ||||| || || | | || || ||||| |||||||||||||||||
Sbjct 35191 AGCTGTCGCAAACAGATCACGTACACGTGAGGGACCAACACCGACAAACATCTCCACAAA 35132
Query 9476 GTTTGCGGC-GGAACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGA 9534
| | | ||| | || ||| || || || || || ||| | || ||| |
Sbjct 35131 CTCAGAACCACTCACACT-GAAGAAAGGCACTCCGGACTCGCCGGCAGTAGCCTTGGCCA 35073
Query 9535 GAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCCCGTGGAATCTTGGCGC 9594
| || |||||||| ||||| || ||| | |||| |||||| || |||||||| || |
Sbjct 35072 GCAGTGTCTTACCGGTACCGGGAGGACCAGACAGGATGGCACCGCGAGGAATCTTAGCAC 35013
Query 9595 C---ACTTCCAAAGTATCTCTCAGGTTGCTTGAGAAAATCCACAATCTCTTCCAATTCAT 9651
| || |||| | ||||||| | |||||| || | ||||| ||| | |||
Sbjct 35012 CAAGACGCACAAACT---TCTCAGGCTTCTTGAGGAACTGCACAAACTCCATGATTTCCA 34956
Query 9652 CTTTGGCGGCGTCAATCCCCTCAACATCGGTAAA 9685
| ||||| |||| || || | ||||| | |||
Sbjct 34955 CCTTGGCTTCGTCCATACCGGCGACATCAGCAAA 34922
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 589976662759640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |