Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Davidsoniella_20virescens_20[genbank_20GCA_5F001513805.1_202016-01- 13] 561 sequences; 33,427,969 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq7 107 2e-18 seq119 102 1e-16 >seq7 Length=77910 Score = 107 bits (118), Expect = 2e-18 Identities = 526/821 (64%), Gaps = 31/821 (4%) Strand=Plus/Minus Query 116986 TAGTCCCCAACTCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 117045 ||||| ||||| ||||||||||||||||||||||| || | || |||||| ||||| Sbjct 73368 TAGTCACCAACACGCTTCTCAAAGAAGTTGGTCTTGCCTCCCAGAGAAATGTTCTCCATG 73309 Query 117046 AAGTCAAATGGATTCTTCGC--GTTCCAAATGG--GTGGC--ACCCCAACTTGTTTGAGG 117099 ||||| || || || | || | | || | | || || | |||| ||| Sbjct 73308 AAGTCGAAGGGGTTTGTAGCACGGTACACTTTGTCGTTGCCAAGGGCAACC------AGG 73255 Query 117100 AGACGATCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGA 117159 ||||| || | || |||||||||||| |||| || | |||||| || | ||| Sbjct 73254 AGACGGTCAGCAACGAACTCAATGTACTGCTTCATCAGATCGGCGTTCATGCCTAGCAGA 73195 Query 117160 TTACATGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATG 117219 || || || || || | |||| | ||||| || |||| || || | | || Sbjct 73194 CCGCAAGGAAGAGCCTCAGTTAAGAACTCCTTCTCGATGACAACAGCATCAGTGATAATC 73135 Query 117220 GCGTGGATAGTTTCGGTAGTGGGTCTATTACGCAAAGTCTTGAAGAGCTCCACGGCAAAC 117279 | || ||| | | || | || ||| | ||| | | ||||| Sbjct 73134 TTTTCGACCAGTTCCTTGCTAGGACGGTTGTTCAAGTGCGAGAACAACAAGCAAGCAAAA 73075 Query 117280 TCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATG 117339 || ||| | ||||||||| ||||| ||||| || || |||||| || || ||||| Sbjct 73074 TCTGTGTGCAAACCCTCATCACGGGAGATAAGCTCGTTAGAGAAGGTCAGACCAGGCATC 73015 Query 117340 AGACCCCGCTTCTTCAACCAATAAATAGC-GCAGAATGACCCGGAGAAGAAGATACCCTC 117398 ||||| ||||| | ||| | |||| ||| || | || ||||||||||||||||| Sbjct 73014 AGACCACGCTTACGTAGCCAGAAGATAGAAGCA-AAGGCACCAGAGAAGAAGATACCCTC 72956 Query 117399 CACACACGCAAACGCAAAAAGGCGCTCGGCGAAGGAGCGAGACTTTGTGTCAAA-CCATT 117457 ||| ||||| |||| || |||| | |||||| | || || ||| |||| ||| | Sbjct 72955 GACAGCAGCAAAGGCAACGAGACGCTGGCCGAAGGTG-GATTCTCTGTCGCAAATCCACT 72897 Query 117458 TCATTGCCCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGCTT----CAAAT 117513 | | ||||| | ||||| || || || | || | ||||| | || | Sbjct 72896 TAAGGGCCCAATCAGCCTTACGGCGGATGCAGGGGATGGTGTCAATGGCGTTGAACAGGT 72837 Query 117514 AACTGCTTCTTTTCAGATCCATCCTTAATGTATTTGTCAATCAATTTTGAATATGTTTCG 117573 | ||| || ||| ||||| ||||| | || |||||| || || || ||| Sbjct 72836 ATGTGC-GCTGAGCAG---GCTCCTTGATGTAAGTATCGATCAATAGGGAGTAGGTCTCG 72781 Query 117574 CCATGAACCAT-TTCATTATGGCATTGATATGCGTAGAATGAGCGCGCTTCGCTTATCTG 117632 || | | | ||| ||| | || | ||||||| |||| || ||| ||||| Sbjct 72780 GAGTGGATGTTCTCCATCATGATCTGGA-AACCGTAGAAGCAGCGAGCCTCGGGGATCTG 72722 Query 117633 CACTTCATCCGCAAAATTGTTATTGATATTCTCAAAAACAATTCCATCGGACCCAGCAAA 117692 || ||| | | ||| | | | |||||| ||||| ||||| || ||||||| Sbjct 72721 GACCTCACCAGAGAAACGCTCAACCAGATTCTCGTTGACAATACCATCAGAGGCAGCAAA 72662 Query 117693 GAATGCCAGGATGT---ACTTTATGAATTTCTTTTCATT-TTCATTCAGGGTCTTCCAGT 117748 ||| |||||||||| | | | | ||| || || || | | | || | ||||||| Sbjct 72661 GAAAGCCAGGATGTGGGAGATGAAGTATTGCTCGTCCTTGGTTAGAC-GGTTGTTCCAGT 72603 Query 117749 CGTCAAGATCTTTGGACAAATCAACTTCTTCCGCAGTCCAA 117789 ||| ||||| ||||| | ||||| || || || |||||| Sbjct 72602 CGTGGAGATCCTTGGATAGATCAATCTCCTCAGCGGTCCAA 72562 >seq119 Length=69832 Score = 102 bits (112), Expect = 1e-16 Identities = 337/514 (66%), Gaps = 20/514 (4%) Strand=Plus/Minus Query 9185 GATCTTACGATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATT 9244 ||| | |||||| || ||||| || | | | ||| | ||| |||||||| ||||||| Sbjct 35428 GATGTGACGATCGAAACGACCAGGTCTCATCAACGCCTTATCTAGGATATCCGCGCGATT 35369 Query 9245 CGTCGCGGCGATGACAACAATACCTGTTT--CATTATCAAAACCATCCATCTCTGTCAAA 9302 || | || | ||||| || ||| | | | | |||||||||||||| || | Sbjct 35368 GGTACCAGCCAGCACAACGAT--CTGCTCAGCGGTGTTGAAACCATCCATCTCGGTTAGG 35311 Query 9303 AGTTGGTTAATAGTTTGTTCCCGTTCATCATT--CGCTGGC-ATACCACCAGCACTGCGT 9359 | ||||| | || || || || || || ||| | | |||| | || | | || Sbjct 35310 ATCTGGTTCAGCGTCGACTCGCGCTCGTCGTTACCGCCGCCCATACGATTAG-AGTCGGT 35252 Query 9360 TGCTTTCCCAC----GGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCG 9415 | || || |||||| || || ||||||||||| || ||||| || | ||| Sbjct 35251 TCTGGACCGACCAATGGCATCGATTTCGTCAATGAAGACGATGCATGGAGAGTTCTTGCG 35192 Query 9416 GGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAA 9475 || | |||| ||||| || || | | || || ||||| ||||||||||||||||| Sbjct 35191 AGCTGTCGCAAACAGATCACGTACACGTGAGGGACCAACACCGACAAACATCTCCACAAA 35132 Query 9476 GTTTGCGGC-GGAACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGA 9534 | | | ||| | || ||| || || || || || ||| | || ||| | Sbjct 35131 CTCAGAACCACTCACACT-GAAGAAAGGCACTCCGGACTCGCCGGCAGTAGCCTTGGCCA 35073 Query 9535 GAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCCCGTGGAATCTTGGCGC 9594 | || |||||||| ||||| || ||| | |||| |||||| || |||||||| || | Sbjct 35072 GCAGTGTCTTACCGGTACCGGGAGGACCAGACAGGATGGCACCGCGAGGAATCTTAGCAC 35013 Query 9595 C---ACTTCCAAAGTATCTCTCAGGTTGCTTGAGAAAATCCACAATCTCTTCCAATTCAT 9651 | || |||| | ||||||| | |||||| || | ||||| ||| | ||| Sbjct 35012 CAAGACGCACAAACT---TCTCAGGCTTCTTGAGGAACTGCACAAACTCCATGATTTCCA 34956 Query 9652 CTTTGGCGGCGTCAATCCCCTCAACATCGGTAAA 9685 | ||||| |||| || || | ||||| | ||| Sbjct 34955 CCTTGGCTTCGTCCATACCGGCGACATCAGCAAA 34922 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589976662759640