Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Davidsoniella_20virescens_20[genbank_20GCA_5F001513805.1_202016-01-
13] 561 sequences; 33,427,969 total letters
Query= NC_018875.1
Length=119082
Score E
Sequences producing significant alignments: (Bits) Value
seq542 109 4e-19
seq94 98.7 8e-16
seq548 82.4 6e-11
>seq542
Length=123657
Score = 109 bits (120), Expect = 4e-19
Identities = 155/218 (71%), Gaps = 0/218 (0%)
Strand=Plus/Minus
Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608
|| |||| |||| |||||| || ||| |||||||| ||||| || ||||| | |||
Sbjct 107364 AGACGCAGAACCAGATGTAGGGTCGACTCCTTTTGAATGTTGTAGTCGGATAGGGTGCGA 107305
Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668
|||| |||| ||||||||| || || || || |||||||| |||| ||||| ||||||
Sbjct 107304 CCGTCCTCCAGCTGCTTACCAGCGAAGATGAGACGCTGTTGGTCCGGGGGAATACCCTCC 107245
Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728
||||| ||||| || || | | | || || | ||| ||||| | ||
Sbjct 107244 TTGTCCTGGATCTTGGACTTCACGTTGTCAATGGTGTCGGAAGACTCGACCTCAAGAGTG 107185
Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766
|| || || || || | ||| || ||||| ||||||||
Sbjct 107184 ATGGTCTTGCCAGTGAGAGTCTTGACAAAGATCTGCAT 107147
Score = 91.5 bits (100), Expect = 1e-13
Identities = 151/218 (69%), Gaps = 0/218 (0%)
Strand=Plus/Minus
Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608
|| |||| |||| ||| || || ||| || || || ||||| ||||| ||| | ||
Sbjct 107136 AGACGCAGAACCAGATGCAGAGTAGACTCCTTCTGGATGTTGTAGTCAGACAGAGTACGT 107077
Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668
|||| |||| ||||||||| || || || || ||||| || |||| |||| ||||||
Sbjct 107076 CCGTCCTCCAGCTGCTTACCAGCGAAAATGAGACGCTGCTGGTCCGGAGGAATACCCTCC 107017
Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728
||||| |||||| || || | | | ||||| | || ||||| | ||
Sbjct 107016 TTGTCCTGAATCTTGGACTTCACGTTGTCAATGGTATCTGAAGATTCAACCTCGAGAGTG 106957
Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766
|| || || || || | ||| || ||||| ||||||||
Sbjct 106956 ATGGTCTTGCCAGTGAGAGTCTTGACAAAGATCTGCAT 106919
Score = 82.4 bits (90), Expect = 6e-11
Identities = 93/125 (74%), Gaps = 0/125 (0%)
Strand=Plus/Minus
Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617
||||| || || ||| ||| ||||| || ||||||||||| || | || |||| ||
Sbjct 106609 ACCAAGTGGAGAGTGGACTCCTTTTGGATGTTGTAATCAGAGAGGGTGCGGCCGTCCTCG 106550
Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677
| ||||| ||||| || ||||| || || || |||| || | |||||||||||| |
Sbjct 106549 AGTTGCTTGCCGGCGAAAATCAGACGTTGCTGGTCCGGAGGGATGCCCTCCTTGTCCTGA 106490
Query 48678 ATCTT 48682
|||||
Sbjct 106489 ATCTT 106485
>seq94
Length=134607
Score = 98.7 bits (108), Expect = 8e-16
Identities = 137/192 (71%), Gaps = 0/192 (0%)
Strand=Plus/Minus
Query 48579 TTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATC 48638
|| || || ||||| || || || | || | || |||| ||||||||| || || |||
Sbjct 34138 TTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCCTCCAGCTGCTTACCAGCGAAGATC 34079
Query 48639 AGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCC 48698
|| ||||| ||||||| ||||| ||||||||| || ||||| || ||| |
Sbjct 34078 AGGCGCTGCTGATCCGGGGGAATGCCCTCCTTATCCTGGATCTTAGACTTGACATTGTCG 34019
Query 48699 ACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAA 48758
| | || || | ||| ||||| | |||||||| || ||||||| || || || |||
Sbjct 34018 ATGGTGTCCGAGGACTCAACCTCGAGGGTAATCGTCTTACCCGTCAGGGTCTTGACGAAA 33959
Query 48759 ATCTGCATCGTG 48770
||||||||| ||
Sbjct 33958 ATCTGCATCTTG 33947
>seq548
Length=140442
Score = 82.4 bits (90), Expect = 6e-11
Identities = 126/180 (70%), Gaps = 0/180 (0%)
Strand=Plus/Plus
Query 48579 TTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATC 48638
|| || || ||||| ||||| ||| | || | || || | |||||| || || || |||
Sbjct 35074 TTCTGGATGTTGTAGTCAGACAGAGTACGGCCATCCTCAAGCTGCTTGCCAGCGAAGATC 35133
Query 48639 AGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCC 48698
|| ||||| || |||| ||||| |||||||||||| |||||| || || |
Sbjct 35134 AGACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGAATCTTGGACTTGACGTTGTCG 35193
Query 48699 ACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAA 48758
| | || || | ||| ||||||| ||||| || || ||||||| || || || |||
Sbjct 35194 ATCGTGTCCGAGGACTCGACCTCCAGGGTAATGGTCTTACCCGTCAGGGTCTTGACGAAA 35253
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 380934995458203
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |