Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Davidsoniella_20virescens_20[genbank_20GCA_5F001513805.1_202016-01- 13] 561 sequences; 33,427,969 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq85 304 2e-77 seq7 165 2e-35 >seq85 Length=153405 Score = 304 bits (336), Expect = 2e-77 Identities = 1140/1758 (65%), Gaps = 86/1758 (5%) Strand=Plus/Minus Query 212553 ACCGTAAACTGTACTGGATCAGCAGCAGCCTTGGTGCGTAGATAGTACATGCCGGTCTTT 212612 || || ||||| | ||| |||| || |||| ||| ||||| |||||||| |||||||| Sbjct 97120 ACAGTGAACTGAATGGGAGCAGCGGCGGCCTGGGTACGTAGGTAGTACATACCGGTCTTG 97061 Query 212613 AGGCC---CTTGCCCCAGCCGTGCATGTGCATTGCTG-TGAGTTTCTTCAGCTTAATATT 212668 || || ||| ||||||| | |||||| |||| ||| |||| | || || Sbjct 97060 AGACCGAGCTT---CCAGCCGGCAAAGTGCAT-GCTGGTGA---TCTTACCCATAGTAG- 97009 Query 212669 CTGGTCATCCTCGTGGCCCAGATGTAGGTTCAGGGACTGACTCTGGTCTATGAATGGGGC 212728 |||| | || || || | |||||| ||||| |||||| ||||| | | | Sbjct 97008 --GGTCCT--TCATG-------TGAATGTTCAGCGACTGCGACTGGTCGATGAAAGCGCC 96960 Query 212729 CCTGTCAGCGGCCATGT---CTATGATATCTCTCTGGGAGAGCTCCCACACGGTCTTGAA 212785 | || || ||||| | | | | || | ||| || | |||||| ||||||||| | Sbjct 96959 ACGATCGGCAGCCATCTGCACAACGGTA---CGCTGAGAAATCTCCCAGACGGTCTTGTA 96903 Query 212786 GATTTCTTTGAGGTCCTCTGGGAAGCCGGGGATGTTCTGCACAGACCCCCTGTGT---AT 212842 | | |||| ||| | |||| |||||||| || || || || | | || Sbjct 96902 CAGGGCCTTGATGTCGGCGGGGATATTAGGGATGTTTTGGACCGAACCGTTATCCGCAAT 96843 Query 212843 GGTCAGCTGCAGGCGCATGTCCTCGTTCCAGAGGCC--------CCTGGTCTCCAGGCAC 212894 | | | | | |||| ||| ||| ||||| || |||| | ||| Sbjct 96842 GATACGGTTCTT---CATGGTGTCGGACCACAGGCCAAGATCGACCAGGTCACGCAGCA- 96787 Query 212895 TTGACCAGGTGAGGGTTGACTATCTGGAAGTCACCTGAGAGCACCCTCCTCTGGTAAAAG 212954 |||||| |||| || | |||||| ||||| | ||||| | | |||||| | | Sbjct 96786 ---ACCAGG----GGTTAACAACCTGGAACTCACCAGCCAGCACACGGCGCTGGTAGATG 96734 Query 212955 TTTGAAGTGTAGGGCTCGATGCTCTCGTTGTTCCCCAGAATCTGTGCAGTGCTGGCTGTG 213014 || || ||||| ||||||| || ||||||||| || || ||||| | || ||| || Sbjct 96733 TTCGAGGTGTAAGGCTCGAAGCACTCGTTGTTGCCTAGGATCTGAGAGGTCGAGGCAGTT 96674 Query 213015 GGCATGGGAGCCACCAGGAGACTGTTCCTCACTCCGTGCTCGCCGATGAGGCGCCGAAGC 213074 ||||| ||||||| || || ||| | ||| ||||||| ||| | | ||| Sbjct 96673 GGCATAGGAGCCAGGAGTAGCGAGTTGCGCACGCCGTGCTGCTTGATCTGTTCCTTGAGC 96614 Query 213075 TCTGCCCAGTCCCATCTGCCAGACAGGTC-CTCGTCCTTCACGTTCCACATGTCAAACTG 213133 ||||||||||| |||||| || | | |||||||||||||| ||||| Sbjct 96613 GAGGCCCAGTCCCA---------CAGGTCACTAGGGGTA-ACGTTCCACATGTCGAACTG 96564 Query 213134 CAAGATGCCTTTGCTCACGGGGCTGCCCTGGTAAGAGGAGTAGGGGCCATGCTCCTTG-G 213192 || ||| || | || || |||| || | |||||| | || | | ||| | Sbjct 96563 CAGGATACCCTGAGATACAGGCGAACCCTCATAGGTGGAGTAAGTACCCT-CGGTTTGAG 96505 Query 213193 CCAGCTCGCAGGACGCCTGCAGGGCAGCGTAGTAGATGGTTTCAAATATCTCCCTGTTGA 213252 | | |||||| || || ||||||||||| ||||||||| || || |||| | |||| | Sbjct 96504 CAATCTCGCACGAGGCAGTCAGGGCAGCGTGGTAGATGGTCTCGAAGATCTGCTTGTTCA 96445 Query 213253 GCTTCTTGGCCTCTGGGGACGTGAAGGGCATCATCATGCGTTGGAACACATCAGCCAGCC 213312 | | |||||| | ||| ||| ||||| | | | |||| |||| || || | Sbjct 96444 GAGTGCGGGCCTCGGCAGACTCGAAAGGCATGCGTAGGGCTAGGAAAGCATCGGCTAGAC 96385 Query 213313 CCTGGACCCCGATGCCGATGGGTCTGTGTCTCAGGTTAGACTTG-GAGCACTCCTCCAAG 213371 ||||||| || | || ||||| | || | || ||| ||| |||| ||| || Sbjct 96384 CCTGGACACCAACACCAATGGGGCGATGACGCATGTTGCTGTTGTGAGC-CTCAGGCACA 96326 Query 213372 GGGTAAAAGTTGCAGTCGATGATCTTGTTGAGGTTGCGGGTGGCCACTTTGGTGACATGG 213431 ||||| |||| ||||| || || ||||| || | |||| ||||||| | | Sbjct 96325 GGGTAGTGGTTGACATCGATAATGCGATTCAGGTTACGCACGACCACCTTGGTGATCTCG 96266 Query 213432 GCCAGGTACTCGTGATTGAACACGTAGCCCCCGTCCTGCACAAACTCAGGCAGGGCGATG 213491 ||| | || | || | || | || | ||||| || ||||| | Sbjct 96265 TGCAGCTTCTGGAAATCGTACTCTCCTTTGTTGTAGTCGACAAAGGATGGTAGGGCTAGC 96206 Query 213492 CTGGCCAGGTTGCAAACGGCCACCTCCT-GAGAGTCTGTGTACTCCATGATCTCGGTGCA 213550 ||| |||||||| ||||| ||||| | | ||| | |||||| ||||| || ||||| Sbjct 96205 GAGGCTAGGTTGCATACGGCAACCTCATCGGGAG-CGCAGTACTCGATGATTTCAGTGCA 96147 Query 213551 CAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGGTTTGACTTTGCGTTGGCAGAATC 213610 || ||| || ||||| ||||| ||||| | ||||| ||| |||| | || Sbjct 96146 TAGATTGGAGCTGCGGATAGTGCCTAGGTTTTTCTGGTTGCTCTTCTTGTTGCAGGCGTC 96087 Query 213611 CTTGTAGAGCATGTAGGGGGACCCGGTCTCTAGCTGGGACACCAGTATCTGGCTCCAGAG 213670 |||||| |||||| | ||| |||||||| ||||| | | || || | ||| || Sbjct 96086 CTTGTACAGCATGAATGGGTTGCCGGTCTCGGTCTGGGCCTCGAGAATGGCGTACCACAG 96027 Query 213671 GTACCTGGCCTTGACCACCCGCCTGACAGCTCCGGGCGTAGC-CTCGTACTGTTCGTAGA 213729 | | |||||||| | ||| || ||| | | | |||||||| || || | Sbjct 96026 CTTCTGGGCCTTGATG----GTAAGACGGCCACGGCCTTCACTCTCGTACTTCTCATACA 95971 Query 213730 GCTCGTTGAATTCGTGGCCCCAG-ACCCTGTCCAGTCCCGGACAGG-ATGCGGGACACAT 213787 | | | ||| || | ||| || | | | | ||||| || || || ||| ||||| Sbjct 95970 GAGCCTCGAACTCCTCGCCGTAGCAATCAG-CTAGTCCAGGGCACTCATTAGGG-CACAT 95913 Query 213788 GAGGCTCCAGTCCCCGTCATCTCTGACTCTCTGCATGAACAGGTCCGGGACCCACAGCGC 213847 ||| |||||| ||| | | ||| | || ||||||||| || || | |||||| || Sbjct 95912 GAGTGTCCAGTTGGCGTTCTTTTCGACACGCTTCATGAACAGATCGGGAATCCACAGTGC 95853 Query 213848 GGTGAACAGGTCCCTGGTCCTCCTCTCGTCCACTCCAGAGTTTTTGCGCAGATCTAGAAA 213907 |||||| || | || | |||| ||| || ||| ||||||||||| || || Sbjct 95852 TAGGAACAGATCACGGGCACGAATCTCCTCCTTGCCGTGGTTCTTGCGCAGATCAAGGAA 95793 Query 213908 GTCAAAGATGTCCGCGTGCCACGGCTCCATGTAGATGGCAAAGGCGCCCGGCCTCTTG-- 213965 || || | || |||||||||||||||| ||| ||||||||||| || || | |||| Sbjct 95792 CTCGAACACATCGGCGTGCCACGGCTCCAGGTAAATGGCAAAGGCACCGGGGCGCTTGTT 95733 Query 213966 -CCGCCCTGGTCCACCAGCCTGGCCACCATGTTGAAGATGCGCAGGACGGGTACCAGCCC 214024 || |||||||| || | ||| ||||||||| ||||| | ||| || | || Sbjct 95732 ACCACCCTGGTCGACGTAGCGGGCAGTGTTGTTGAAGACACGCAGCATGGGAACAATGCC 95673 Query 214025 GTTGGACTGTCCGTTGGTTCCCGCTATATACGAGCCGGAGGCCC--TCAGGTTGCTCATG 214082 ||| ||| |||||||| || || || |||||||| | ||| | | | || | | Sbjct 95672 GTTAGACGTGCCGTTGGTGCCAGCAATGTACGAGCCAGTGGCACGGATACGGTGGACGTT 95613 Query 214083 GAGAGCCCTATGCCACCGGCGTACTTGGAGATCATGGCGCAGCGCCTCACAGTCTCCATG 214142 ||| || || || ||||| |||||||||||| || || | ||| || || | Sbjct 95612 CAGA--CCGATACCGCCGGCCATCTTGGAGATCATAGCACAAGTCTTCAGCGTATCGTAG 95555 Query 214143 ATGCCGGCCATGCTGTCATCTGTGAGGTTCAGCAAGAAGCAGCTCGAGAGCTGGGGCCTG 214202 || || | |||||||| || | | | | | |||||| ||| |||| ||||||| Sbjct 95554 ATACCATCAATGCTGTCGTCCTTCATATCAACTAGGAAGCACGACGATAGCT-GGGCCTG 95496 Query 214203 -GACGAGCCAGAGTTGAAAAGCGTGGGGCTGGCATGGATCATAAACTTGTTAGAGAGGAG 214261 | | ||||| |||||| |||||||| ||| || | | |||||| | || | | Sbjct 95495 CGGTGTGCCAGCGTTGAATAGCGTGGGCGAGGCGTGTGTGAAGAACTTGCTTGACATGTA 95436 Query 214262 CCTGTAGGTCTCCAGGAC 214279 |||| ||||| || || Sbjct 95435 GTTGTAAGTCTCGAGCAC 95418 >seq7 Length=77910 Score = 165 bits (182), Expect = 2e-35 Identities = 484/733 (66%), Gaps = 21/733 (3%) Strand=Plus/Minus Query 47840 TGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTCC 47899 |||||||| || || | |||||||||||||| ||||| || ||| || ||||||||| Sbjct 73371 TGGTAGTCACCAACACGCTTCTCAAAGAAGTTGGTCTTGCCTCCCAGAGAAATGTTCTCC 73312 Query 47900 ATGAAGAGGAAGGGGTTGGGTGTGTTATACACCCGTGTCAGGCCCATCTGTT-CCAGCAG 47958 |||||| ||||||||| | | ||||| |||| ||| | |||| || Sbjct 73311 ATGAAGTCGAAGGGGTTTGTAGCACGGTACACTT-TGTCGTTGCCAAGGGCAACCAGGAG 73253 Query 47959 GTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGGGA 48018 | || || ||| |||| ||||| | ||| || | ||||||||||| || | Sbjct 73252 ACGGTCAGCAACGAACTCAATGTACTGCTTCATCAGATCGGCGTTCATGCCTAGCAG--A 73195 Query 48019 CACG---GGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAAT 48075 | || || | ||||| || | ||||||||||| || || || || | ||| Sbjct 73194 C-CGCAAGGAAGAGCCTCAGTTAAGAACTCCTTCTCGATGACAACAGCATCAGTGATAAT 73136 Query 48076 CTGCTTAACGCGGGACTCTG--AGG--GTTTGTTGCGCAGGTGCTTGGCATAGAGCATGC 48131 || | || | || || ||| | ||||| || |||| | | | || || Sbjct 73135 CTTTTCGACCAGTTCCT-TGCTAGGACGGTTGTT---CAAGTGCGAGA---ACAACAAGC 73083 Query 48132 AGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGAC 48191 | ||||| || ||||||| || || || ||| ||| ||| |||| |||||| |||| Sbjct 73082 AAGCAAAATCTGTGTGCAAACCCTCATCACGGGAGATAAGCTCGTTAGAGAAGGTCAGAC 73023 Query 48192 CAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGA 48251 ||||||| | || | || |||||||| || | || || | ||||||||||||| Sbjct 73022 CAGGCATCAGACCACGCTTACGTAGCCAGAAGATAGAAGCAAAGGCACCAGAGAAGAAGA 72963 Query 48252 TGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCT-TGTCTGAG 48310 | ||||| || || || || || ||| | || ||| ||| | |||| |||| | Sbjct 72962 TACCCTCGACAGCAGCAAAGGCAACGAGACGCTGGCCG-AAGGTGGATTCTCTGTCGCAA 72904 Query 48311 ATCCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCGG 48370 ||||| ||| ||||| || ||||| |||||| || || || || ||||| | Sbjct 72903 ATCCACTTAAGGGCCCAATCAGCCTTACGGCGGATGCAGGGGATGGTGTCAATGGCGTTG 72844 Query 48371 AAGAGCTTCTTGCACTCACCTGCGTCCGCAACATAGGTAGTGAGCAGCTTTGCGTACATC 48430 || || | ||| || | | | ||| | || ||| || || | ||| || Sbjct 72843 AACAGGTATGTGCGCTGAGCAGGCTCCTTGATGTAAGTATCGATCAATAGGGAGTAGGTC 72784 Query 48431 TCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACACC 48490 || ||||| | ||||| || ||||||||| ||||||||| | ||||| | | Sbjct 72783 TCGGAGTGGATGTTCTCCATCATGATCTGGAAACCGTAGAAGCAGCGAGCCTCGGGGATC 72724 Query 48491 TGCACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCAGCA 48550 || || || ||||| | ||| | ||||||||| ||||| || ||||| || |||||| Sbjct 72723 TGGACCTCACCAGAGAAACGCTCAACCAGATTCTCGTTGACAATACCATCAGAGGCAGCA 72664 Query 48551 AAGAAGGCAAGGA 48563 ||||| || |||| Sbjct 72663 AAGAAAGCCAGGA 72651 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931526267626240