Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Davidsoniella_20virescens_20[genbank_20GCA_5F001513805.1_202016-01- 13] 561 sequences; 33,427,969 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq7 239 8e-58 seq85 199 7e-46 >seq7 Length=77910 Score = 239 bits (264), Expect = 8e-58 Identities = 573/860 (67%), Gaps = 28/860 (3%) Strand=Plus/Plus Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536 || ||| |||||||||||||||| | || |||||||| || ||||||||||| Sbjct 72527 ATCTGGCAGATGTACAAGAAGGCCGAGGCATCTTTTTGGACCGCTGAGGAGATTGATCTA 72586 Query 25537 GCCAAGGACATGGACGGCTGGTACGC---TCTATCCAAAGACGAGCAGCATTTTCTCAAG 25593 ||||||| | ||| |||| || |||| |||| |||||||| | || || Sbjct 72587 TCCAAGGATCTCCACGACTGGAACAACCGTCTAACCAAGGACGAGCAATACTTCATCTCC 72646 Query 25594 TACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGA 25653 || | |||| |||||||| |||||||||||||| || |||||||||||| ||| | Sbjct 72647 CACATCCTGGCTTTCTTTGCTGCCTCTGATGGTATTGTCAACGAGAATCTGGTTGAGCGT 72706 Query 25654 TTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCATC 25713 ||| | | || || ||| | ||||| || ||||||||||||||||| || Sbjct 72707 TTCTCTGGTGAGGTCCAGATCCCCGAGGCTCGCTGCTTCTACGGTTTCCAGATCATGATG 72766 Query 25714 GAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGAT---GACGTACATTACAGACGTC 25770 || || | ||||| ||| || || || |||| || ||||| | || Sbjct 72767 GAGAACATCCACTCCGAGACCTACTCC---CTATTGATCGATACTTACATCAAGGAGCCT 72823 Query 25771 GCCGAGAG-AGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGGC 25829 || || | | || ||||| ||||| || ||| ||| ||||| | ||||| Sbjct 72824 GCTCAGCGCACAT-ACCTGTTCAACGCCATTGACACCATCCCCTGCATCCGCCGTAAGGC 72882 Query 25830 GCGGTGGGCCATGAAGTGGATCAACAGCCAGAG-CGCTACGTTTGGCGAGCGGCTGGTAG 25888 |||||| | |||||||| | | ||||| | || || ||| |||| || || | Sbjct 72883 TGATTGGGCCCTTAAGTGGATTTGC-GACAGAGAATCCACCTTCGGCCAGCGTCTCGTTG 72941 Query 25889 CCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTGGCTCA 25948 ||||||||||||| ||||| ||||| ||| ||| | ||||| | ||||||||||| | Sbjct 72942 CCTTTGCTGCTGTCGAGGGTATCTTCTTCTCTGGTGCCTTTGCTTCTATCTTCTGGCT-A 73000 Query 25949 AGCAGAAGGGGAC-CATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAG 26007 | | | || | ||||| || ||| ||| || |||||||| ||| | | || ||| Sbjct 73001 CGTAAGCGTGGTCTGATGCCTGGTCTGACCTTCTCTAACGAGCTTATCTCCCGTGATGAG 73060 Query 26008 GGTCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCCACAAACCTTCT 26067 ||| | |||| ||||||||| ||| || | | | || |||||| |||| | | || Sbjct 73061 GGTTTGCACACAGATTTTGCTTGCTTGTTGTTCTCG---CACTTG---AACAACCGTCCT 73114 Query 26068 --CAAGAGAC-CGTCTACAGTATCATCAAAGAGGCTGTGGAGATCGAGAAGGAGTTTCNN 26124 |||| || ||| | | || |||| || ||||| | |||||||||||||| Sbjct 73115 AGCAAGGAACTGGTCGAAAAGATTATCACTGATGCTGTTGTCATCGAGAAGGAGTTCTTA 73174 Query 26125 NNNNNNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGACTCATGAGCCAATACATT 26184 | ||||||||| | || |||| || |||||| Sbjct 73175 ACTGAGGCTCTTCCTTGCGGTCTGCTAGGCATGAACGCCGATCTGATGAAGCAGTACATT 73234 Query 26185 GAGTATGTGGCCGACCATCTGCTG--TGCCAGCTGGGACTCGCCAGACTCTACAGTACGC 26242 |||| || || |||| ||| ||| |||| || || || || | | ||| || | Sbjct 73235 GAGTTCGTTGCTGACCGTCTCCTGGTTGCC--CTTGGCAACGACAAAGTGTACCGTGCTA 73292 Query 26243 CTAACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAACTTCTTTGAAA 26302 | ||||| |||||||| ||||| ||||| || ||| ||| ||||||||||||||||| | Sbjct 73293 CAAACCCCTTCGACTTCATGGAGAACATTTCTCTGGGAGGCAAGACCAACTTCTTTGAGA 73352 Query 26303 AGAGGGTCGGCGACTATCAA 26322 || | || || ||||| ||| Sbjct 73353 AGCGTGTTGGTGACTACCAA 73372 >seq85 Length=153405 Score = 199 bits (220), Expect = 7e-46 Identities = 824/1280 (64%), Gaps = 51/1280 (4%) Strand=Plus/Minus Query 221417 GTCAGGGCAGCGTGGTAGATGGTCTCAAAGATCATCTTGTTGAGTCTCTTGGCCTCGGGA 221476 |||||||||||||||||||||||||| |||||| |||||| || | |||||||| | Sbjct 96487 GTCAGGGCAGCGTGGTAGATGGTCTCGAAGATCTGCTTGTTCAGAGTGCGGGCCTCGGCA 96428 Query 221477 GAAGTGAAGGGCATACGCAGCA-TCTGAAAGACGTCGGCCAGTCCCTGTACTCCGATACC 221535 || ||| ||||| || || | ||||| | ||||| || ||||| || || | ||| Sbjct 96427 GACTCGAAAGGCATGCGTAGGGCTAGGAAAG-CATCGGCTAGACCCTGGACACCAACACC 96369 Query 221536 GATGGGCCTGTGTCTCCTGTTGGAAGCGGCCGCTTCTGGCACGGGATAAAAGTTGACGTC 221595 ||||| | || | | ||||| | || || ||||| || || |||||| || Sbjct 96368 AATGGGGCGATGACGCATGTTGCTGTTGTGAGCCTCAGGCACAGGGTAGTGGTTGACATC 96309 Query 221596 GATCAGATTGTTGAGGTTCAGAGTGATGACTTTAACCACCTCGGTCAGCTTCTGGTGATT 221655 ||| | || ||||| | || || || | |||| |||||||||| || Sbjct 96308 GATAATGCGATTCAGGTTACGCACGACCACCTTGGTGATCTCGTGCAGCTTCTGGAAATC 96249 Query 221656 GAACACCAACTCGCCGCCGTCGTGGAGGGGTTCCACAAAAGCGTTTAGGGCAACGCTGGC 221715 | || || || || || | || ||||| | |||||| | ||| Sbjct 96248 GTAC------TCTCCTTTGTTGTAG------TCGACAAAGGATGGTAGGGCTAGCGAGGC 96201 Query 221716 CAGGTTACACACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGAGGTT 221775 ||||| || ||||| ||||| || | |||| ||||| || || || || || Sbjct 96200 TAGGTTGCATACGGCAACCTCATCGGGAGCGCAGTACTCGATGATTTCAGTGCATAGATT 96141 Query 221776 GCTGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCCTTGTA 221835 | || ||| || || |||| || || || ||| ||| ||||||||||| Sbjct 96140 GGAGCTGCGGATAGTGCCTAGGTTTTTCTGGTTGCTCTTCTTGTTGCAGGCGTCCTTGTA 96081 Query 221836 GAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGAG-TTCTC 221894 ||||| || || ||| ||||| ||| ||| | ||||| || ||| || |||| Sbjct 96080 CAGCATGAATGGGTTGCCGGTCTCGGTCTGGGCCTCGAGAATGGCGTACCACAGCTTCTG 96021 Query 221895 TGGC-----GCTCAC-CGTCCTCTTGACTGCACCCTCGGTCTTTTCATACCCGGTATAGA 221948 | | | | | || || | | || ||| |||| ||| |||||| ||| Sbjct 96020 GGCCTTGATGGTAAGACGGCCACG-GCCTTCACTCTCGTACTTCTCATAC-------AGA 95969 Query 221949 GCATGTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGACACATCA 222008 || | | |||| || ||||| || | || || || ||| || ||||| | Sbjct 95968 GCCT--CGAACTCCTCGCCGTAGCAATCAGCTAGTCCAGGGCACTCATTAGGGCACATGA 95911 Query 222009 GACTCCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGCCT 222068 | |||||| ||| | || ||| | || |||||| || || || |||||||| || Sbjct 95910 GTGTCCAGTTGGCGTTCTTTTCGACACGCTTCATGAACAGATCGGGAATCCACAGTGCTA 95851 Query 222069 GAAAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAACT 222128 | || ||||| | || || ||||||| ||||| ||| || | |||||| | |||| Sbjct 95850 GGAACAGATCACGGGCACGAATCTCCTCCTTGCCGTGGTTCTTGCGCAGATCAAGGAACT 95791 Query 222129 CAAAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTGTTGC 222188 | || | || ||||||||||||||||| || | ||| | || ||||| |||||||| | Sbjct 95790 CGAACACATCGGCGTGCCACGGCTCCAGGTAAATGGCAAAGGCACCGGGGCGCTTGTTAC 95731 Query 222189 CACCCTGATCCACCATCCTCTCCAGAG-CGTTGAAGATGCGAAGGGTCGGTACCAGTCCG 222247 ||||||| || | | | ||| | |||||||| || || | || || | ||| Sbjct 95730 CACCCTGGTCGA-CGTAGCGGGCAGTGTTGTTGAAGACACGCAGCATGGGAACAATGCCG 95672 Query 222248 TTGGATCGACCGTTGGTGCCCTTAATGTACGCACCGCCGGCCCTCAGGTTAC--TGG-CA 222304 || || ||||||||||| |||||||| || ||| | || ||| ||| | Sbjct 95671 TTAGACGTGCCGTTGGTGCCAGCAATGTACGAGCCAGTGGCAC---GGATACGGTGGACG 95615 Query 222305 GACATGCCGATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAGAGTGTCCATG 222364 || |||||||| ||||| || |||||||| || || |||| || || || | Sbjct 95614 TTCAGACCGATACCGCCGGCCATCTTGGAGATCATAGCACAAGTCTTCAGCGTATCGTAG 95555 Query 222365 ATGCCCTCCATAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACATCTGAG-ATTT 222423 || || || || ||| ||||| | | | || || || ||||| | ||| | | Sbjct 95554 ATACCATCAATGCTGTCGTCCTTCATATCAACTAGGAAGCACGACGATAGCTGGGCCTGC 95495 Query 222424 GGTGGAACAGGCGTTAAACAGCGTGGGACTGGCGTGTGTAAAGTAGCCCCTAGACATCAG 222483 |||| || ||||| || |||||||| ||||||||| ||| | || ||||| Sbjct 95494 GGTGTGCCA-GCGTTGAATAGCGTGGGCGAGGCGTGTGTGAAGAACTTGCTTGACATGTA 95436 Query 222484 ATCGTACGTCTCTACGACTCTGGCGATGTTGTC-CCCGTGAATCTGC--ATGGCGCATCT 222540 | ||| ||||| | || | | | | | ||| ||| || ||| | ||| | Sbjct 95435 GTTGTAAGTCTCGAGCACACGGTCAACGCGGTCACCCCAGA---TGCCAACGGCCACACG 95379 Query 222541 CATGTACATGTACTGGGGCCTCTCCACA--GGACCCTTGGAGCTGGAGAGCAGGTACGAT 222598 |||| ||||| ||| || | ||| ||| || | |||| ||||||||||| Sbjct 95378 CATGATCATGTGCTGCGGACGCTCGACAATCTTGCCGTCTAGCT--TAAGCAGGTACGAA 95321 Query 222599 TTTTCCAGAGTCTTGAACCCAAAGTAGTTGAGGTCAAAGTCTCTGCCGTGAACCACGGCG 222658 || || |||||||| |||||||| | | || ||||| | ||| || | ||| Sbjct 95320 CGCTCTAGGGTCTTGAAGCCAAAGTACTGGTAGTTGAAGTCACGATCGTACACAATGGCA 95261 Query 222659 GCGTCCAGCTCCGACTTGTG 222678 | ||||||||| |||||| Sbjct 95260 GAGTCCAGCTCTTCCTTGTG 95241 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928838286475840