Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Davidsoniella_20virescens_20[genbank_20GCA_5F001513805.1_202016-01- 13] 561 sequences; 33,427,969 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq85 141 1e-28 seq7 107 2e-18 seq119 95.1 1e-14 >seq85 Length=153405 Score = 141 bits (156), Expect = 1e-28 Identities = 888/1405 (63%), Gaps = 51/1405 (4%) Strand=Plus/Plus Query 75212 CCACAGTACATGTTCATGCGGGTCGCAATCGGCATCCACGGGGAAGACATTGATTCTGTC 75271 || ||| ||||| ||||||| || || | |||||| || || | |||| ||| Sbjct 95361 CCGCAGCACATGATCATGCGTGTGGCCGTTGGCATCTGGGGTGACCGCGTTGACCGTGTG 95420 Query 75272 TTGGAGACATACGACAAGATGTCC--CAAGGTATGTTCATTCACGCAACACCAACCCTCT 75329 | ||||| ||| || | ||||| |||| | | ||| ||||| | || || || | Sbjct 95421 CTCGAGACTTACAACTACATGTCAAGCAAGTTCT--TCACACACGCCTCGCCCACGCTAT 95478 Query 75330 TCAATGCTGGTACACCA-AGACCGCAGATGTCCAGTTGCTTCCTTATCGCCAACAAGGAG 75388 |||| ||||| ||||| || || ||| | || |||||||| | | | ||||| Sbjct 95479 TCAACGCTGGCACACCGCAGGCC-CAGCTATCGTCGTGCTTCCTAGTTGATATGAAGGAC 95537 Query 75389 GACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCT 75448 ||| || | |||||||| | || || | | ||||| ||||| ||| ||| Sbjct 95538 GACAGCATTGATGGTATCTACGATACGCTGAAGACTTGTGCTATGATCTCCAAGATGGCC 95597 Query 75449 GGGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTA--TTCGGGGGA 75506 || ||||| || || || |||| | | | |||| | |||||| || || | Sbjct 95598 GGCGGTATCGGTCTGAACGTCCACCGTATCCGTGCCACTGG--CTCGTACATTGCTGGCA 95655 Query 75507 CAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCT 75566 | || || || | || ||| |||| ||||| || || || ||| ||| || |||| Sbjct 95656 CCAACGGCACGTCTAACGGCATTGTTCCCATGCTGCGTGTCTTCAACAACACTGCCCGCT 95715 Query 75567 ATGTAAATCAAGCGGGGCGTCGCAAGGG-----GT-CCATCGCGGTCTACTTGGAACCAT 75620 | || | || ||| || |||| | || || | || | ||| |||| || | Sbjct 95716 ACGTCGACCA---GGGTGGTAACAAGCGCCCCGGTGCCTTTGCCATTTACCTGGAGCCGT 95772 Query 75621 GGCATGCCGATATCATGGAGTTCCTTGAGTTACGACTCAACCAAGGTGACGAAGAGGCTC 75680 |||| |||||| | | ||||||||||| | || ||||| || | || ||| || Sbjct 95773 GGCACGCCGATGTGTTCGAGTTCCTTGATCTGCGCAAGAACCACGGCAAGGAGGAGATTC 95832 Query 75681 GGTGTAGAGATCTCTTTTCATCCCTGTGGATTCCAGACCTTTTCATGAAGCGGGTTGAGG 75740 | | ||||| || | | ||||||||||| || || ||||||||||| || || Sbjct 95833 GTGCCCGTGATCTGTTCCTAGCACTGTGGATTCCCGATCTGTTCATGAAGCGTGTCGAAA 95892 Query 75741 AGGGTGGTCAATGGTCTCTTTTCTGTCCAGACAAGGCACCAGGTCTCTCCGACGCGGTGG 75800 || | | ||| | || | || || | || || || || | || | Sbjct 95893 AGAACGCCAACTGGACACTCATGTGCCCTAATGAGTGCCCTGGACTAGCTGATTGCTACG 95952 Query 75801 GTGAGGAGTTTGAAGCCCTCTACACAAAGTATGAAGAGGAGGGTAGAGCCAATGC-GACT 75859 | |||||||| || || || || ||||| || ||| | || ||| || | || Sbjct 95953 GCGAGGAGTTCGAGGCTCTGTATGAGAAGTACGA----GAGTGAAG-GCCGTGGCCGTCT 96007 Query 75860 GTACCAGCC--GCC--GATGTT-TGGAAGGCTATTCTCAAATCACAGACGGAGACTGGAA 75914 ||||| | ||| || | | ||| | || |||||| | | ||||| ||||| || | Sbjct 96008 -TACCATCAAGGCCCAGAAGCTGTGGTACGCCATTCTCGAGGCCCAGACCGAGACCGGCA 96066 Query 75915 CACCATATATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAGAATTTGGGAA 75974 |||| ||||| |||||||| || || ||||||||||| ||||| || || | || | Sbjct 96067 ACCCATTCATGCTGTACAAGGACGCCTGCAACAAGAAGAGCAACCAGAAAAACCTAGGCA 96126 Query 75975 CAATCAAGAGCTCAAATCTTTGCACGGAAATTTTAGAGTACACAGATAAGGATGAGACGG 76034 | ||| ||||| ||||| ||||| ||||| | |||||| | | |||||| | Sbjct 96127 CTATCCGCAGCTCCAATCTATGCACTGAAATCATCGAGTACTGCGCTCCCGATGAGGTTG 96186 Query 76035 CTGTTTGCAATTTGGCATCAATCGCCCTTCCAAAGTATGTCAATGAAGAGACTCGCACTT 76094 | || ||||| | || || | ||||| ||| | |||| | | | | | | Sbjct 96187 CCGTATGCAACCTAGCCTCGCTAGCCCTACCATCCTTTGTCGACTACAACAAAGGAGAGT 96246 Query 76095 TTGATTATGAAAAACTTCATGAAATCACAAAGATTGTTACCAAAAATCTAAACCGAGTCA 76154 |||| | || || || || ||||| ||| | || || || || || | | Sbjct 96247 ACGATTTCCAGAAGCTGCACGAGATCACCAAGGTGGTCGTGCGTAACCTGAATCGCATTA 96306 Query 76155 TTGACAGAAATTTTTATCCCGT---TGAGACTGCGCGAAAGTCTAATATGCGACACAGAC 76211 | || || || || || |||| || | | | || || ||||| || | | Sbjct 96307 TCGATGTCAACCACTACCCTGTGCCTGAGGCT-CACAACAG--CAACATGCGTCATCGCC 96363 Query 76212 CTATTGGTTTGGGTGTTCAAGGTCTCGCGGATGTATTTATTTTGTGCCGCTACGCA---- 76267 | |||||| | ||||| || ||||| || |||| ||| | | ||||||| Sbjct 96364 CCATTGGTGTTGGTGTCCAGGGTCTAGCCGATG-----CTTTCCTAGCCCTACGCATGCC 96418 Query 76268 -TTTGATTCAGATGAAGCCAAGGAGATGAATGCTCGTATCTTTGAAACCATGTATCACGC 76326 || || || | || ||| |||| | ||||| || ||||| || ||||| Sbjct 96419 TTTCGAGTCTGCCGAGGCCCGCACTCTGAACAAGCAGATCTTCGAGACCATCTACCACGC 96478 Query 76327 ATCCCTGGAGGCGAGTTGTGAATTGGCTGAAGCCCAAGGTTCCTATGAGACATTTGAGGG 76386 ||||| || || || | ||| || || | ||| | || || | |||||| Sbjct 96479 TGCCCTGACTGCCTCGTGCGAGATTGCTCAAACCGAGGGTACTTACTCCACCTATGAGGG 96538 Query 76387 TTCTCCCGCGTCCCAAGGGGTGCTTCAGTTTGATATGTGGGAAGGTGAAACCAAGCTCAA 76446 ||| || | || || || | || ||||| || |||| |||| || | || || | | Sbjct 96539 TTCGCCTGTATCTCAGGGTATCCTGCAGTTCGACATGT-GGAACGTTACCCCTAG-TGAC 96596 Query 76447 C--TACGACTGGGATGTTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTT 76504 | | ||||||| |||||||||| |||||| || | || | || ||| || Sbjct 96597 CTGTGGGACTGGGCCTCGCTCAAGGAACAGATCAAGCAGCACGGCGTGCGCAACTCGCTA 96656 Query 76505 TTGATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTT 76564 | |||| || |||||||| ||||| ||| | || ||| | || || || || ||||| Sbjct 96657 CTCCTGGCTCCTATGCCAACTGCCTCGACCTCTCAGATCCTAGGCAACAACGAGTGCTTC 96716 Query 76565 GAACCATACACAACAAACATCTACC 76589 || || ||||| | |||||||||| Sbjct 96717 GAGCCTTACACCTCGAACATCTACC 96741 >seq7 Length=77910 Score = 107 bits (118), Expect = 2e-18 Identities = 526/821 (64%), Gaps = 31/821 (4%) Strand=Plus/Plus Query 64713 TTGGACTGCGGAAGAAGTTGATTTGTCCAAAGATCTTGACGACTGGAAGACCCTGAATGA 64772 |||||| || || || ||||| | ||||| ||||| |||||||||| | || | | | Sbjct 72562 TTGGACCGCTGAGGAGATTGATCTATCCAAGGATCTCCACGACTGGAACAACC-GTCTAA 72620 Query 64773 A-AATGAAAAGAAATTCATAAAGT---ACATCCTGGCATTCTTTGCTGGGTCCGATGGAA 64828 || || || ||| | | | | |||||||||| |||||||||| || ||||| | Sbjct 72621 CCAAGGACGAGCAATACTTCATCTCCCACATCCTGGCTTTCTTTGCTGCCTCTGATGGTA 72680 Query 64829 TTGTTTTTGAGAATATCAATAACAATTTTGCGGATGAAGTGCAGATAAGCGAAGCGCGCT 64888 |||| |||||| | | | ||| | | ||| || ||||| ||| || |||| Sbjct 72681 TTGTCAACGAGAATCTGGTTGAGCGTTTCTCTGGTGAGGTCCAGATCCCCGAGGCTCGCT 72740 Query 64889 CATTCTACGCATATCAATGCCATAATGAA-ATGGTTCATGGCGAAACATATTCAAAATTG 64947 ||||||| | || | ||| ||| | | | || ||| || || || |||| Sbjct 72741 GCTTCTACGGTT-TCCAGATCATGATGGAGAACATCCACTCCGAGACCTACTCCCTATTG 72799 Query 64948 ATTGACAAATACATTAAGGATGGATCTGAAAAGAAGCAGTTATTTG----AAGCCATCCA 65003 || || | ||||| ||||| ||| || ||| || || | ||||| | Sbjct 72800 ATCGATACTTACATCAAGGAGC---CTGCTCAGC-GCACATACCTGTTCAACGCCATTGA 72855 Query 65004 AACTGTACCATGTATTGAGAAGAAGGCGAAATGGGCAATGAAATGG-TTTGACACAAAGT 65062 || | || || || ||||| | ||||| | || ||| |||| ||| || Sbjct 72856 CACCATCCCCTGCATCCGCCGTAAGGCTGATTGGGCCCTTAAGTGGATTTGCGACAGAGA 72915 Query 65063 CTCGCTCCTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCG 65122 || | |||||| | |||| || |||| ||||| ||| ||||||||||||||||| | Sbjct 72916 ATC-CACCTTCGGCCAGCGTCTCGTTGCCTTTGCTGCTGTCGAGGGTATCTTCTTCTCTG 72974 Query 65123 GGTCATTCTGC-GCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTC 65181 | | || ||| |||| | ||| | ||||| ||||| ||||| || || |||| Sbjct 72975 GTGCCTT-TGCTTCTATCTTCTGGCTACGTAAGCGTGGTCTGATGCCTGGTCTGACCTTC 73033 Query 65182 TCAAATGAACTTATTTCCCGAGATGAGGGTCTCCACCAGGAGTTTGCCGTGGAGCTCTTC 65241 || || || ||||| ||||| ||||||||| | ||| || ||||| | | ||| Sbjct 73034 TCTAACGAGCTTATCTCCCGTGATGAGGGTTTGCACACAGATTTTGCTTGCTTGTTGTTC 73093 Query 65242 AAGACTTTGCGTAATAGACCCACTACCGAAACTATCCACGCCATCGTGAAAGAGGCGGTT 65301 | ||| || | || | | ||| || | || | | || || ||| Sbjct 73094 TCGCACTTGAACAACCGTCCTAGCAAGGAACTGGTCGAAAAGATTATCACTGATGCTGTT 73153 Query 65302 GAGATTGAGAAAGGGTTCATCTTGGACGCACTCCCATGTAATCTCATCGGTATGAACTCT 65361 | || ||||| | |||| | || || || || || ||| | || |||||| | Sbjct 73154 GTCATCGAGAAGGAGTTCTTAACTGAGGCTCTTCCTTGCGGTCTGCTAGGCATGAACGCC 73213 Query 65362 GAGAAGATGTCCGAGTACATTGAGTATGTGTCGGATCGTCTCCTCAAACAAGTTGGGGT- 65420 || |||| |||||||||||| || | || |||||||| |||| | Sbjct 73214 GATCTGATGAAGCAGTACATTGAGTTCGTTGCTGACCGTCTCCT------GGTTGCCCTT 73267 Query 65421 -GCCAC--CCATTTGGAAC--GCGAAGAATCCATTTGACTTTATGGAAAACATTAGCCTT 65475 || || | | || | | || | || || || ||||| ||||| |||||| || Sbjct 73268 GGCAACGACAAAGTGTACCGTGCTACAAACCCCTTCGACTTCATGGAGAACATTTCTCTG 73327 Query 65476 GATGGGAAGACCAACTTCTTTGAGAAGCGAGTTGGGGACTA 65516 | || ||||||||||||||||||||||| ||||| ||||| Sbjct 73328 GGAGGCAAGACCAACTTCTTTGAGAAGCGTGTTGGTGACTA 73368 >seq119 Length=69832 Score = 95.1 bits (104), Expect = 1e-14 Identities = 329/501 (66%), Gaps = 18/501 (4%) Strand=Plus/Plus Query 175191 TGATGTTGAGGGGATTGACGCCGCCAAAGATGAACTTGAAGAGATTGTGGATTTTCTCAA 175250 |||||| | || || |||| ||||| | ||| | ||| ||||| | || ||||| Sbjct 34927 TGATGTCGCCGGTATGGACGAAGCCAAGGTGGAAATCATGGAGTTTGTGCAGTTCCTCAA 34986 Query 175251 GCAACCCGAGAGATATTTTGGAAGTGGTGCCAAGATCCCCCGAGGCGCCCTTCTCGCGGG 175310 | | || |||| | | | | |||||| ||||| || || || ||| | || | || Sbjct 34987 GAAGCCTGAGAAGTTTGTGCGTCTTGGTGCTAAGATTCCTCGCGGTGCCATCCTGTCTGG 35046 Query 175311 TAAGCCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCC 175370 | || ||||| || ||||| || || ||| || | || || || || || || Sbjct 35047 TCCTCCCGGTACCGGTAAGACACTGCTGGCCAAGGCTACTGCCGGCGAGTCCGGAGTGCC 35106 Query 175371 ATTCATCCAGTGCTC-TGCCGCAAACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAA 175429 ||| || |||| || | | ||||||||||||||||| ||||| ||| || | Sbjct 35107 TTTCTTC-AGTGTGAGTGGTTCTGAGTTTGTGGAGATGTTTGTCGGTGTTGGTCCCTCAC 35165 Query 175430 GGGTTCGCGATCTCTTTGAAATCGCCCGCGAAAATCAACCATGTATTGTCTTCATTGATG 175489 | || || ||||| |||| | || ||| | || ||||| || ||||||||||| | Sbjct 35166 GTGTACGTGATCTGTTTGCGACAGCTCGCAAGAACTCTCCATGCATCGTCTTCATTGACG 35225 Query 175490 AGATTGATGC----GGT-GGGCAAGCAACGCAGCGCTGGTGGTAT-GCCAGC--AAATGA 175541 | || ||||| ||| || | || ||| | | || | |||| | | || || || Sbjct 35226 AAATCGATGCCATTGGTCGGTCCAG-AAC-CGACTCTAATCGTATGGGCGGCGGTAACGA 35283 Query 175542 CGAGAGAGAACAAACAATTAATCAACTACTCACCGAGATGGATGGCTTTGACA---ATGA 175598 |||| | || || | || || | || |||||||||||||| || ||| ||| Sbjct 35284 CGAGCGCGAGTCGACGCTGAACCAGATCCTAACCGAGATGGATGGTTTCAACACCGCTGA 35343 Query 175599 GACTGGCATTGTGGTTATTGCGGCCACTAATCGCGTGGATATCCTTGATGACGCCCTCCT 175658 | | | || || || | || | || ||||||| ||||||||| ||| | || | | Sbjct 35344 G-CAG--ATCGTTGTGCTGGCTGGTACCAATCGCGCGGATATCCTAGATAAGGCGTTGAT 35400 Query 175659 TCGCCCGGGTCGTTTTGATCG 175679 | || |||||||| ||||| Sbjct 35401 GAGACCTGGTCGTTTCGATCG 35421 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596565416555680