Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Davidsoniella_20virescens_20[genbank_20GCA_5F001513805.1_202016-01-
13] 561 sequences; 33,427,969 total letters
Query= NC_021247.1
Length=228750
Score E
Sequences producing significant alignments: (Bits) Value
seq7 87.8 3e-12
>seq7
Length=77910
Score = 87.8 bits (96), Expect = 3e-12
Identities = 361/561 (64%), Gaps = 17/561 (3%)
Strand=Plus/Minus
Query 18152 AATAAACACGCAAAATCAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTACTAAAC 18211
|| || || |||||||| ||||| ||||| ||||| | ||| || | |||||| ||
Sbjct 73089 AACAAGCAAGCAAAATCTGTGTGCAAACCCTCATCACGGGAGATAAGCTCGTTAGAGAAG 73030
Query 18212 GTTAACCCGGGCATTATACCTCttttttttAGCCAAAATATCGATGCGAAACTACTAGAA 18271
|| | || ||||| | ||| | || |||||| || || || || || || |||
Sbjct 73029 GTCAGACCAGGCATCAGACCACGCTTACGTAGCCAGAAGATAGAAGCAAAGGCACCAGAG 72970
Query 18272 AAGAATATACCCTCAAC-GCACGCGAACGCTATTAATCTTTCAGCAAAACTGTATTTATT 18330
||||| |||||||| || ||| || || || | | | | | || || ||| |
Sbjct 72969 AAGAAGATACCCTCGACAGCA-GCAAAGGCAACGAGACGCTGGCCGAAGGTGGATTCTCT 72911
Query 18331 G-CTCAGTATCCATTTTTGTGCCCATTCTCCTTNNNNNNNNATACACGGTATACTCTCTA 18389
| | || ||||| || | ||||| || | | || || || || | || |
Sbjct 72910 GTCGCAA-ATCCACTTAAGGGCCCAATCAGCCTTACGGCGGATGCAGGGGATGGTGTCAA 72852
Query 18390 TAGCATTAAACAAATCATCTTTTTCTTTGGAATCT--TTTATATAAGTGTCGATTAACAA 18447
| || || |||| | || | || | | || || || ||||| ||||| || |
Sbjct 72851 TGGCGTTGAACAGGT-ATGTGCG-CTGAGCAGGCTCCTTGATGTAAGTATCGATCAATAG 72794
Query 18448 AGAATACATTTCAGAATGTATGCTTTCCATAGCTATCTGAAAACTATAAAACGATCTAGC 18507
|| || | || || || ||| | ||||| ||||| |||| || || | | |||
Sbjct 72793 GGAGTAGGTCTCGGAGTGGATGTTCTCCATCATGATCTGGAAACCGTAGAAGCAGCGAGC 72734
Query 18508 CTCGGGATATTGAATCTCGCTATAAAATCTTTCTACCAAATTCTCATTAACTATACCGTC 18567
|||||| || | ||| | | | || | || |||| |||||| || || ||||| ||
Sbjct 72733 CTCGGGGATCTGGACCTCACCAGAGAAACGCTCAACCAGATTCTCGTTGACAATACCATC 72674
Query 18568 AGCAGATGCGAAAAATGCCAAAACATATTTAATGAAATGTTTTTCATTATCCTTG---AG 18624
|| | || || || |||| | | ||||| | || || | ||||| ||
Sbjct 72673 AGAGGCAGCAAAGAAAGCCAGGATGTGGGAGATGAAGTATTGCTCGT---CCTTGGTTAG 72617
Query 18625 A---TTGTTCCATTCATCTATATCTTTTGATAGATCAACTTCTTCCGATGTCCAAAAAGA 18681
| |||||||| || | | ||| || |||||||||| || || | |||||||||||
Sbjct 72616 ACGGTTGTTCCAGTCGTGGAGATCCTTGGATAGATCAATCTCCTCAGCGGTCCAAAAAGA 72557
Query 18682 TGATTCGGCCTGTTTGTACAT 18702
|| ||||||| ||||||||
Sbjct 72556 TGCCTCGGCCTTCTTGTACAT 72536
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 731866867747600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |