Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Davidsoniella_20virescens_20[genbank_20GCA_5F001513805.1_202016-01- 13] 561 sequences; 33,427,969 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq7 87.8 3e-12 >seq7 Length=77910 Score = 87.8 bits (96), Expect = 3e-12 Identities = 361/561 (64%), Gaps = 17/561 (3%) Strand=Plus/Minus Query 18152 AATAAACACGCAAAATCAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTACTAAAC 18211 || || || |||||||| ||||| ||||| ||||| | ||| || | |||||| || Sbjct 73089 AACAAGCAAGCAAAATCTGTGTGCAAACCCTCATCACGGGAGATAAGCTCGTTAGAGAAG 73030 Query 18212 GTTAACCCGGGCATTATACCTCttttttttAGCCAAAATATCGATGCGAAACTACTAGAA 18271 || | || ||||| | ||| | || |||||| || || || || || || ||| Sbjct 73029 GTCAGACCAGGCATCAGACCACGCTTACGTAGCCAGAAGATAGAAGCAAAGGCACCAGAG 72970 Query 18272 AAGAATATACCCTCAAC-GCACGCGAACGCTATTAATCTTTCAGCAAAACTGTATTTATT 18330 ||||| |||||||| || ||| || || || | | | | | || || ||| | Sbjct 72969 AAGAAGATACCCTCGACAGCA-GCAAAGGCAACGAGACGCTGGCCGAAGGTGGATTCTCT 72911 Query 18331 G-CTCAGTATCCATTTTTGTGCCCATTCTCCTTNNNNNNNNATACACGGTATACTCTCTA 18389 | | || ||||| || | ||||| || | | || || || || | || | Sbjct 72910 GTCGCAA-ATCCACTTAAGGGCCCAATCAGCCTTACGGCGGATGCAGGGGATGGTGTCAA 72852 Query 18390 TAGCATTAAACAAATCATCTTTTTCTTTGGAATCT--TTTATATAAGTGTCGATTAACAA 18447 | || || |||| | || | || | | || || || ||||| ||||| || | Sbjct 72851 TGGCGTTGAACAGGT-ATGTGCG-CTGAGCAGGCTCCTTGATGTAAGTATCGATCAATAG 72794 Query 18448 AGAATACATTTCAGAATGTATGCTTTCCATAGCTATCTGAAAACTATAAAACGATCTAGC 18507 || || | || || || ||| | ||||| ||||| |||| || || | | ||| Sbjct 72793 GGAGTAGGTCTCGGAGTGGATGTTCTCCATCATGATCTGGAAACCGTAGAAGCAGCGAGC 72734 Query 18508 CTCGGGATATTGAATCTCGCTATAAAATCTTTCTACCAAATTCTCATTAACTATACCGTC 18567 |||||| || | ||| | | | || | || |||| |||||| || || ||||| || Sbjct 72733 CTCGGGGATCTGGACCTCACCAGAGAAACGCTCAACCAGATTCTCGTTGACAATACCATC 72674 Query 18568 AGCAGATGCGAAAAATGCCAAAACATATTTAATGAAATGTTTTTCATTATCCTTG---AG 18624 || | || || || |||| | | ||||| | || || | ||||| || Sbjct 72673 AGAGGCAGCAAAGAAAGCCAGGATGTGGGAGATGAAGTATTGCTCGT---CCTTGGTTAG 72617 Query 18625 A---TTGTTCCATTCATCTATATCTTTTGATAGATCAACTTCTTCCGATGTCCAAAAAGA 18681 | |||||||| || | | ||| || |||||||||| || || | ||||||||||| Sbjct 72616 ACGGTTGTTCCAGTCGTGGAGATCCTTGGATAGATCAATCTCCTCAGCGGTCCAAAAAGA 72557 Query 18682 TGATTCGGCCTGTTTGTACAT 18702 || ||||||| |||||||| Sbjct 72556 TGCCTCGGCCTTCTTGTACAT 72536 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731866867747600