Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Davidsoniella_20virescens_20[genbank_20GCA_5F001513805.1_202016-01- 13] 561 sequences; 33,427,969 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq85 138 3e-27 seq292 132 1e-25 seq206 111 5e-19 seq7 96.9 1e-14 >seq85 Length=153405 Score = 138 bits (152), Expect = 3e-27 Identities = 505/786 (64%), Gaps = 11/786 (1%) Strand=Plus/Minus Query 155592 GACGCCAGATTACATACCGCAGTCTCCTTGTCGTCGCTGTATTCTACAATCTCACAGCAC 155651 || || || || ||||| ||| ||| | | ||| ||| || | || ||| ||| Sbjct 96205 GAGGCTAGGTTGCATACGGCAACCTCATCGGGAGCGCAGTACTCGATGATTTCAGTGCAT 96146 Query 155652 AGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTTAGATTTACTGTTACAAGCATCC 155711 || || || || ||| ||||||| || |||||||| || |||| || || ||| Sbjct 96145 AGATTGGAGCTGCGGATAGTGCCTAGGTTTTTCTGGTTGCTCTTCTTGTTGCAGGCGTCC 96086 Query 155712 TTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTGCGTCCAGAATCTTTAGCCAGAGG 155771 ||||| || ||| ||||| | || ||||| |||| || || ||||| ||| || Sbjct 96085 TTGTACAGCATGAATGGGTTGCCGGTCTCGGTCTGGGCCTCGAGAATGGCGTACCACAGC 96026 Query 155772 TCACGGGCATTAATTTGCTTGTTGTATCTGCCTTCCGACTCATATTTCATATACAGCGTT 155831 | |||| || || | | |||||| ||| || ||| |||||| | Sbjct 96025 TTCTGGGCCTTGATGGTAAGACGGCCACGGCCTTCACTCTCGTACTTCTCATACAGAGCC 95966 Query 155832 CGGTAATCCTCACCGTAACAATCACTCAGTCCAGGGCACTTATCGGGGCAAAACAGCGAC 155891 | | ||||| ||||| |||||| ||||||||||||| || ||||| | || | | Sbjct 95965 TCGAACTCCTCGCCGTAGCAATCAGCTAGTCCAGGGCACTCATTAGGGCACATGAGTGTC 95906 Query 155892 CAAATT---TTATTACCGATTACACGCTCCATAAATACATCACTCGCCCAAATAGCATAG 155948 || | || || ||| |||||| ||| || | ||| ||| | || | Sbjct 95905 CAGTTGGCGTTCTTTTCGA---CACGCTTCATGAACAGATCGGGAATCCACAGTGCTAGG 95849 Query 155949 AAAAGGTCCCTTGCCTTTGACTCCTCATCGCCGTGATTCTTCCGTAGCTCTAAGAATTCC 156008 || || || | || |||||| | |||||| ||||| || || || | ||| || Sbjct 95848 AACAGATCACGGGCACGAATCTCCTCCTTGCCGTGGTTCTTGCGCAGATCAAGGAACTCG 95789 Query 156009 TCAATATCAGGATGGTGTGGCTCCAGATACATAGCAAAACTACCATTCCTCTTG---CCA 156065 | ||| | || |||||||| || || ||||| ||| | |||| ||| Sbjct 95788 AACACATCGGCGTGCCACGGCTCCAGGTAAATGGCAAAGGCACCGGGGCGCTTGTTACCA 95729 Query 156066 CCCTGATCTACATACCGAGCAGTCTTATTGAAGACACCTAGCATAGGAATAATACCATTG 156125 ||||| || || || || ||||| || |||||||||| ||||| |||| ||| || || Sbjct 95728 CCCTGGTCGACGTAGCGGGCAGTGTTGTTGAAGACACGCAGCATGGGAACAATGCCGTTA 95669 Query 156126 GAAGTGCCATTGGTTCCGCGAATATGCGAACCAGATGAGCGAACATTATGAATATGTAGT 156185 || ||||| ||||| || ||| | ||| |||| | || | | || | | || Sbjct 95668 GACGTGCCGTTGGTGCCAGCAATGTACGAGCCAGTGGCACGGATACGGTGGACGTTCAGA 95609 Query 156186 CCAATACCACCTGACCAT-TTAGAAATTTGAGCGCATTCCTTTACAGTATTGAAAATACC 156244 || ||||| || | |||| || || || ||| || ||| | |||| | | ||||| Sbjct 95608 CCGATACCGCCGG-CCATCTTGGAGATCATAGCACAAGTCTTCAGCGTATCGTAGATACC 95550 Query 156245 TTCAATAGAATCATCTTCCATTGATAGTAGATAGCACGAACTTAATTGAGGTCGTGGTGT 156304 ||||| || || | ||| | ||| ||||||| || || | | ||||| Sbjct 95549 ATCAATGCTGTCGTCCTTCATATCAACTAGGAAGCACGACGATAGCTGGGCCTGCGGTGT 95490 Query 156305 TCCAGCGTTGAATAGTGTAGGTGTTGCATGAATAAAATACTTATTAGACATATAATCGTA 156364 |||||||||||||| || || | || || | || |||| | ||||| || | ||| Sbjct 95489 GCCAGCGTTGAATAGCGTGGGCGAGGCGTGTGTGAAGAACTTGCTTGACATGTAGTTGTA 95430 Query 156365 TGTCTC 156370 ||||| Sbjct 95429 AGTCTC 95424 >seq292 Length=75382 Score = 132 bits (146), Expect = 1e-25 Identities = 190/264 (72%), Gaps = 8/264 (3%) Strand=Plus/Plus Query 302584 TTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGA 302643 |||| || |||||| ||||| || |||||| | || || ||||| |||||||||||| Sbjct 61856 TTGACTAGACGACGTTGAATGTATCCAGTTTCGGCAGTCTTGACAGCAGTATCAATTAGA 61915 Query 302644 CCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGT-AGCCCCCCAATAAA 302702 || |||||||| |||| || |||||||| | ||| | | ||| || || | || | Sbjct 61916 CCTTCACGACCAGCCATGGCGTGGAAGAAGAACTC-GCTTGGCGTAAGACCACGAAGGTA 61974 Query 302703 GGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTCGAACTTGGTAAAGTGTGGCAG 302762 |||| | ||||| || ||||| | |||||| || | || ||||||||||| ||||| Sbjct 61975 GGAGTTTTCAACAAAGCCACGAGACTCGGGGGAGTAATCATCTTTGGTAAAGTGAGGCAG 62034 Query 302763 GGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTGCTGTC---CCAG 302819 ||| | || || | || | |||||||||||||| || ||| | || || | |||| Sbjct 62035 GGTACGGTACTTGAAACCAAAAGGGATACGCTTTCCTTCGACGATTTGTTGACCGACCAG 62094 Query 302820 GCACGAAATCATCTGCGAAATATT 302843 || ||||||| ||||| || Sbjct 62095 AGCCG---TCATCTGGGAAATGTT 62115 Score = 96.9 bits (106), Expect = 1e-14 Identities = 108/141 (77%), Gaps = 5/141 (4%) Strand=Plus/Plus Query 301813 AGAATTTC-TTCAATACGGGGAACACCACGGGTTACGTTAGACTTGGACGCAACACCAGC 301871 |||||||| ||||| ||| ||||||||| | || ||||| ||| || | |||||||| Sbjct 61061 AGAATTTCCTTCAA-ACGAGGAACACCAAGAGTAACGTT---CTTAGAAGACACACCAGC 61116 Query 301872 AAAGTGGAAAGTATTCAGAGTTAATTGAGTAGTTGGCTCACCAATACTTTGTGCCGCAAT 301931 ||| |||||||| ||||| || | ||||||| ||||| ||||| || || |||| Sbjct 61117 AAAATGGAAAGTGTTCAGCGTCATCTGAGTAGCAGGCTCGCCAATTGACTGAGCAGCAAG 61176 Query 301932 CATACCAACCATTTCTCCTGG 301952 || ||||||||| || || || Sbjct 61177 CACACCAACCATCTCACCGGG 61197 >seq206 Length=96508 Score = 111 bits (122), Expect = 5e-19 Identities = 175/251 (70%), Gaps = 0/251 (0%) Strand=Plus/Minus Query 251407 ATAAGACCACACTTATTACACACATGGACGCTGTAAGCATCAGATGCGTCATATAGCCGA 251466 ||||||||||| | | || | || || | | ||||||| || | ||| | | || Sbjct 8589 ATAAGACCACAAATCTCGCAAATGTGAACACGGAAAGCATCCGAAACTTCAAACAAACGC 8530 Query 251467 CCCTTGGTGAAGCGAGATGCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAA 251526 |||| ||| || |||||||| | ||||||||||||||| ||||||||||||||| Sbjct 8529 TCCTTCAGGAAAGCAGCGGCACCGTGGGCAATCATACAATCACGTTCCATTTCACCGAAA 8470 Query 251527 CGAAGACCACCATCGCGAGCCCTACCCTCGGCAGGCTGACGAGTGAGATTAACCATAGGA 251586 || ||||||||||| || || | ||| || | ||||||||||| | | || |||| Sbjct 8469 CGCAGACCACCATCACGGGCACGACCTTCTACGGGCTGACGAGTCATGATCTGCACAGGA 8410 Query 251587 CCGATGGAGCGGCTATGTTGCTTATCATTTACCATATGCTTGAGACGCTGGTAGAATGCG 251646 || || || || ||| || | ||||| || ||||| |||||| ||| Sbjct 8409 CCACGGGCACGAGCGTGGATCTTGTCGTCCACCATGTGACGCAGACGTTGGTAGTATGTA 8350 Query 251647 GGACCGATGAA 251657 ||||||| ||| Sbjct 8349 GGACCGAAGAA 8339 Score = 89.7 bits (98), Expect = 2e-12 Identities = 54/57 (95%), Gaps = 0/57 (0%) Strand=Plus/Minus Query 233273 GCACCGTGAGCAATCATACAATCACGTTCCATTTCACCAATACGCAGACCACCATCA 233329 |||||||| ||||||||||||||||||||||||||||| | |||||||||||||||| Sbjct 8511 GCACCGTGGGCAATCATACAATCACGTTCCATTTCACCGAAACGCAGACCACCATCA 8455 Score = 87.8 bits (96), Expect = 5e-12 Identities = 113/151 (75%), Gaps = 4/151 (3%) Strand=Plus/Minus Query 251839 TGGGCGATAGTCATACGACTGGGAATAGCATGGGGATTGATGATGATGTCGGGTTTCAGT 251898 ||||| || ||||||||| |||||||| || || || ||||||||||| || | | Sbjct 8157 TGGGCAATGGTCATACGAGAAGGAATAGCGTGAGGGTTAATGATGATGTCAGGAGTGATA 8098 Query 251899 CCATCAGCAG-TGAAGGGCATATCCTTTTCCTCAATAA-TGTTTCCAATAGTTCCCTTTT 251956 || || |||| | || |||||||| | || | ||| || || |||||||| |||| Sbjct 8097 CCCTC-GCAGGTAAACGGCATATCTTCTTGG-CGATACGTGACACCGATAGTTCCTTTTT 8040 Query 251957 GTCCGTGACGAGAACTGAACTTATCACCAAT 251987 ||||||||||||| |||||||| ||||| Sbjct 8039 GTCCGTGACGAGACGCAAACTTATCTCCAAT 8009 >seq7 Length=77910 Score = 96.9 bits (106), Expect = 1e-14 Identities = 285/429 (66%), Gaps = 8/429 (2%) Strand=Plus/Plus Query 133232 GCGTTTTTTGCTGCGAGTGATGGTATTGTTCTTGAAAATTTAGGAACACGGTTTATG-GG 133290 || || |||||||| |||||||||||| || ||| | || | |||| | || Sbjct 72656 GCTTTCTTTGCTGCCTCTGATGGTATTGTCAACGAGAATCT-GGTTGAGCGTTTCTCTGG 72714 Query 133291 AGAAGTTCAACTGGCCGAAGCCCGTGCCTTTTATGGGCTACAGATTGCGATGGAAAATAT 133350 || || || | |||| || || ||| || || | ||||| |||||| || || Sbjct 72715 TGAGGTCCAGATCCCCGAGGCTCGCTGCTTCTACGGTTTCCAGATCATGATGGAGAACAT 72774 Query 133351 CCATTCTATCACATATTCTACTCTAATTGATACTTACATCAAAGATACCGTCCAGAAGCA 133410 ||| || || || || | || |||||||||||||| || | | ||| ||| Sbjct 72775 CCACTCCGAGACCTACTCCCTATTGATCGATACTTACATCAAGGAGCCTGCTCAGC-GCA 72833 Query 133411 CAAAC-TATTCAACGCCATTAGCGAATTTCCTTGTATTAAAAAGAAATCTGACTGGGCTA 133469 || || | |||||||||||| | | || || || || |||| ||||| Sbjct 72834 CATACCTGTTCAACGCCATTGACACCATCCCCTGCATCCGCCGTAAGGCTGATTGGGCCC 72893 Query 133470 TTAAATGGATCCAGGACA-AGCGTGCGAGTTTTGCTACTCGTCTCGTTGCTTTTGCTGTA 133528 |||| ||||| |||| || | | || || | ||||||||||| ||||||| Sbjct 72894 TTAAGTGGATTTGCGACAGAGAATCCACCTTCGGCCAG-CGTCTCGTTGCCTTTGCTGCT 72952 Query 133529 GTAGAGGGCAtttttttCAGTGGTGCGTTCTGC-TCTATTTTTTGGCTTAAAAAGCGTGG 133587 || ||||| || || ||| |||||| || ||| ||||| || ||||| |||||||| Sbjct 72953 GTCGAGGGTATCTTCTTCTCTGGTGCCTT-TGCTTCTATCTTCTGGCTACGTAAGCGTGG 73011 Query 133588 TATTCTACCTGGACTGTGTTTTTCTAACGAACTTATTTCAAGGGACGAGGCACTTCACAC 133647 | | | ||||| ||| || |||||||| ||||| || | || |||| | ||||| Sbjct 73012 TCTGATGCCTGGTCTGACCTTCTCTAACGAGCTTATCTCCCGTGATGAGGGTTTGCACAC 73071 Query 133648 CGAATTTGC 133656 || ||||| Sbjct 73072 AGATTTTGC 73080 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471807020851057