Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Davidsoniella_20virescens_20[genbank_20GCA_5F001513805.1_202016-01-
13] 561 sequences; 33,427,969 total letters
Query= NC_021312.1
Length=459984
Score E
Sequences producing significant alignments: (Bits) Value
seq85 138 3e-27
seq292 132 1e-25
seq206 111 5e-19
seq7 96.9 1e-14
>seq85
Length=153405
Score = 138 bits (152), Expect = 3e-27
Identities = 505/786 (64%), Gaps = 11/786 (1%)
Strand=Plus/Minus
Query 155592 GACGCCAGATTACATACCGCAGTCTCCTTGTCGTCGCTGTATTCTACAATCTCACAGCAC 155651
|| || || || ||||| ||| ||| | | ||| ||| || | || ||| |||
Sbjct 96205 GAGGCTAGGTTGCATACGGCAACCTCATCGGGAGCGCAGTACTCGATGATTTCAGTGCAT 96146
Query 155652 AGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTTAGATTTACTGTTACAAGCATCC 155711
|| || || || ||| ||||||| || |||||||| || |||| || || |||
Sbjct 96145 AGATTGGAGCTGCGGATAGTGCCTAGGTTTTTCTGGTTGCTCTTCTTGTTGCAGGCGTCC 96086
Query 155712 TTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTGCGTCCAGAATCTTTAGCCAGAGG 155771
||||| || ||| ||||| | || ||||| |||| || || ||||| ||| ||
Sbjct 96085 TTGTACAGCATGAATGGGTTGCCGGTCTCGGTCTGGGCCTCGAGAATGGCGTACCACAGC 96026
Query 155772 TCACGGGCATTAATTTGCTTGTTGTATCTGCCTTCCGACTCATATTTCATATACAGCGTT 155831
| |||| || || | | |||||| ||| || ||| |||||| |
Sbjct 96025 TTCTGGGCCTTGATGGTAAGACGGCCACGGCCTTCACTCTCGTACTTCTCATACAGAGCC 95966
Query 155832 CGGTAATCCTCACCGTAACAATCACTCAGTCCAGGGCACTTATCGGGGCAAAACAGCGAC 155891
| | ||||| ||||| |||||| ||||||||||||| || ||||| | || | |
Sbjct 95965 TCGAACTCCTCGCCGTAGCAATCAGCTAGTCCAGGGCACTCATTAGGGCACATGAGTGTC 95906
Query 155892 CAAATT---TTATTACCGATTACACGCTCCATAAATACATCACTCGCCCAAATAGCATAG 155948
|| | || || ||| |||||| ||| || | ||| ||| | || |
Sbjct 95905 CAGTTGGCGTTCTTTTCGA---CACGCTTCATGAACAGATCGGGAATCCACAGTGCTAGG 95849
Query 155949 AAAAGGTCCCTTGCCTTTGACTCCTCATCGCCGTGATTCTTCCGTAGCTCTAAGAATTCC 156008
|| || || | || |||||| | |||||| ||||| || || || | ||| ||
Sbjct 95848 AACAGATCACGGGCACGAATCTCCTCCTTGCCGTGGTTCTTGCGCAGATCAAGGAACTCG 95789
Query 156009 TCAATATCAGGATGGTGTGGCTCCAGATACATAGCAAAACTACCATTCCTCTTG---CCA 156065
| ||| | || |||||||| || || ||||| ||| | |||| |||
Sbjct 95788 AACACATCGGCGTGCCACGGCTCCAGGTAAATGGCAAAGGCACCGGGGCGCTTGTTACCA 95729
Query 156066 CCCTGATCTACATACCGAGCAGTCTTATTGAAGACACCTAGCATAGGAATAATACCATTG 156125
||||| || || || || ||||| || |||||||||| ||||| |||| ||| || ||
Sbjct 95728 CCCTGGTCGACGTAGCGGGCAGTGTTGTTGAAGACACGCAGCATGGGAACAATGCCGTTA 95669
Query 156126 GAAGTGCCATTGGTTCCGCGAATATGCGAACCAGATGAGCGAACATTATGAATATGTAGT 156185
|| ||||| ||||| || ||| | ||| |||| | || | | || | | ||
Sbjct 95668 GACGTGCCGTTGGTGCCAGCAATGTACGAGCCAGTGGCACGGATACGGTGGACGTTCAGA 95609
Query 156186 CCAATACCACCTGACCAT-TTAGAAATTTGAGCGCATTCCTTTACAGTATTGAAAATACC 156244
|| ||||| || | |||| || || || ||| || ||| | |||| | | |||||
Sbjct 95608 CCGATACCGCCGG-CCATCTTGGAGATCATAGCACAAGTCTTCAGCGTATCGTAGATACC 95550
Query 156245 TTCAATAGAATCATCTTCCATTGATAGTAGATAGCACGAACTTAATTGAGGTCGTGGTGT 156304
||||| || || | ||| | ||| ||||||| || || | | |||||
Sbjct 95549 ATCAATGCTGTCGTCCTTCATATCAACTAGGAAGCACGACGATAGCTGGGCCTGCGGTGT 95490
Query 156305 TCCAGCGTTGAATAGTGTAGGTGTTGCATGAATAAAATACTTATTAGACATATAATCGTA 156364
|||||||||||||| || || | || || | || |||| | ||||| || | |||
Sbjct 95489 GCCAGCGTTGAATAGCGTGGGCGAGGCGTGTGTGAAGAACTTGCTTGACATGTAGTTGTA 95430
Query 156365 TGTCTC 156370
|||||
Sbjct 95429 AGTCTC 95424
>seq292
Length=75382
Score = 132 bits (146), Expect = 1e-25
Identities = 190/264 (72%), Gaps = 8/264 (3%)
Strand=Plus/Plus
Query 302584 TTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGA 302643
|||| || |||||| ||||| || |||||| | || || ||||| ||||||||||||
Sbjct 61856 TTGACTAGACGACGTTGAATGTATCCAGTTTCGGCAGTCTTGACAGCAGTATCAATTAGA 61915
Query 302644 CCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGT-AGCCCCCCAATAAA 302702
|| |||||||| |||| || |||||||| | ||| | | ||| || || | || |
Sbjct 61916 CCTTCACGACCAGCCATGGCGTGGAAGAAGAACTC-GCTTGGCGTAAGACCACGAAGGTA 61974
Query 302703 GGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTCGAACTTGGTAAAGTGTGGCAG 302762
|||| | ||||| || ||||| | |||||| || | || ||||||||||| |||||
Sbjct 61975 GGAGTTTTCAACAAAGCCACGAGACTCGGGGGAGTAATCATCTTTGGTAAAGTGAGGCAG 62034
Query 302763 GGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTGCTGTC---CCAG 302819
||| | || || | || | |||||||||||||| || ||| | || || | ||||
Sbjct 62035 GGTACGGTACTTGAAACCAAAAGGGATACGCTTTCCTTCGACGATTTGTTGACCGACCAG 62094
Query 302820 GCACGAAATCATCTGCGAAATATT 302843
|| ||||||| ||||| ||
Sbjct 62095 AGCCG---TCATCTGGGAAATGTT 62115
Score = 96.9 bits (106), Expect = 1e-14
Identities = 108/141 (77%), Gaps = 5/141 (4%)
Strand=Plus/Plus
Query 301813 AGAATTTC-TTCAATACGGGGAACACCACGGGTTACGTTAGACTTGGACGCAACACCAGC 301871
|||||||| ||||| ||| ||||||||| | || ||||| ||| || | ||||||||
Sbjct 61061 AGAATTTCCTTCAA-ACGAGGAACACCAAGAGTAACGTT---CTTAGAAGACACACCAGC 61116
Query 301872 AAAGTGGAAAGTATTCAGAGTTAATTGAGTAGTTGGCTCACCAATACTTTGTGCCGCAAT 301931
||| |||||||| ||||| || | ||||||| ||||| ||||| || || ||||
Sbjct 61117 AAAATGGAAAGTGTTCAGCGTCATCTGAGTAGCAGGCTCGCCAATTGACTGAGCAGCAAG 61176
Query 301932 CATACCAACCATTTCTCCTGG 301952
|| ||||||||| || || ||
Sbjct 61177 CACACCAACCATCTCACCGGG 61197
>seq206
Length=96508
Score = 111 bits (122), Expect = 5e-19
Identities = 175/251 (70%), Gaps = 0/251 (0%)
Strand=Plus/Minus
Query 251407 ATAAGACCACACTTATTACACACATGGACGCTGTAAGCATCAGATGCGTCATATAGCCGA 251466
||||||||||| | | || | || || | | ||||||| || | ||| | | ||
Sbjct 8589 ATAAGACCACAAATCTCGCAAATGTGAACACGGAAAGCATCCGAAACTTCAAACAAACGC 8530
Query 251467 CCCTTGGTGAAGCGAGATGCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAA 251526
|||| ||| || |||||||| | ||||||||||||||| |||||||||||||||
Sbjct 8529 TCCTTCAGGAAAGCAGCGGCACCGTGGGCAATCATACAATCACGTTCCATTTCACCGAAA 8470
Query 251527 CGAAGACCACCATCGCGAGCCCTACCCTCGGCAGGCTGACGAGTGAGATTAACCATAGGA 251586
|| ||||||||||| || || | ||| || | ||||||||||| | | || ||||
Sbjct 8469 CGCAGACCACCATCACGGGCACGACCTTCTACGGGCTGACGAGTCATGATCTGCACAGGA 8410
Query 251587 CCGATGGAGCGGCTATGTTGCTTATCATTTACCATATGCTTGAGACGCTGGTAGAATGCG 251646
|| || || || ||| || | ||||| || ||||| |||||| |||
Sbjct 8409 CCACGGGCACGAGCGTGGATCTTGTCGTCCACCATGTGACGCAGACGTTGGTAGTATGTA 8350
Query 251647 GGACCGATGAA 251657
||||||| |||
Sbjct 8349 GGACCGAAGAA 8339
Score = 89.7 bits (98), Expect = 2e-12
Identities = 54/57 (95%), Gaps = 0/57 (0%)
Strand=Plus/Minus
Query 233273 GCACCGTGAGCAATCATACAATCACGTTCCATTTCACCAATACGCAGACCACCATCA 233329
|||||||| ||||||||||||||||||||||||||||| | ||||||||||||||||
Sbjct 8511 GCACCGTGGGCAATCATACAATCACGTTCCATTTCACCGAAACGCAGACCACCATCA 8455
Score = 87.8 bits (96), Expect = 5e-12
Identities = 113/151 (75%), Gaps = 4/151 (3%)
Strand=Plus/Minus
Query 251839 TGGGCGATAGTCATACGACTGGGAATAGCATGGGGATTGATGATGATGTCGGGTTTCAGT 251898
||||| || ||||||||| |||||||| || || || ||||||||||| || | |
Sbjct 8157 TGGGCAATGGTCATACGAGAAGGAATAGCGTGAGGGTTAATGATGATGTCAGGAGTGATA 8098
Query 251899 CCATCAGCAG-TGAAGGGCATATCCTTTTCCTCAATAA-TGTTTCCAATAGTTCCCTTTT 251956
|| || |||| | || |||||||| | || | ||| || || |||||||| ||||
Sbjct 8097 CCCTC-GCAGGTAAACGGCATATCTTCTTGG-CGATACGTGACACCGATAGTTCCTTTTT 8040
Query 251957 GTCCGTGACGAGAACTGAACTTATCACCAAT 251987
||||||||||||| |||||||| |||||
Sbjct 8039 GTCCGTGACGAGACGCAAACTTATCTCCAAT 8009
>seq7
Length=77910
Score = 96.9 bits (106), Expect = 1e-14
Identities = 285/429 (66%), Gaps = 8/429 (2%)
Strand=Plus/Plus
Query 133232 GCGTTTTTTGCTGCGAGTGATGGTATTGTTCTTGAAAATTTAGGAACACGGTTTATG-GG 133290
|| || |||||||| |||||||||||| || ||| | || | |||| | ||
Sbjct 72656 GCTTTCTTTGCTGCCTCTGATGGTATTGTCAACGAGAATCT-GGTTGAGCGTTTCTCTGG 72714
Query 133291 AGAAGTTCAACTGGCCGAAGCCCGTGCCTTTTATGGGCTACAGATTGCGATGGAAAATAT 133350
|| || || | |||| || || ||| || || | ||||| |||||| || ||
Sbjct 72715 TGAGGTCCAGATCCCCGAGGCTCGCTGCTTCTACGGTTTCCAGATCATGATGGAGAACAT 72774
Query 133351 CCATTCTATCACATATTCTACTCTAATTGATACTTACATCAAAGATACCGTCCAGAAGCA 133410
||| || || || || | || |||||||||||||| || | | ||| |||
Sbjct 72775 CCACTCCGAGACCTACTCCCTATTGATCGATACTTACATCAAGGAGCCTGCTCAGC-GCA 72833
Query 133411 CAAAC-TATTCAACGCCATTAGCGAATTTCCTTGTATTAAAAAGAAATCTGACTGGGCTA 133469
|| || | |||||||||||| | | || || || || |||| |||||
Sbjct 72834 CATACCTGTTCAACGCCATTGACACCATCCCCTGCATCCGCCGTAAGGCTGATTGGGCCC 72893
Query 133470 TTAAATGGATCCAGGACA-AGCGTGCGAGTTTTGCTACTCGTCTCGTTGCTTTTGCTGTA 133528
|||| ||||| |||| || | | || || | ||||||||||| |||||||
Sbjct 72894 TTAAGTGGATTTGCGACAGAGAATCCACCTTCGGCCAG-CGTCTCGTTGCCTTTGCTGCT 72952
Query 133529 GTAGAGGGCAtttttttCAGTGGTGCGTTCTGC-TCTATTTTTTGGCTTAAAAAGCGTGG 133587
|| ||||| || || ||| |||||| || ||| ||||| || ||||| ||||||||
Sbjct 72953 GTCGAGGGTATCTTCTTCTCTGGTGCCTT-TGCTTCTATCTTCTGGCTACGTAAGCGTGG 73011
Query 133588 TATTCTACCTGGACTGTGTTTTTCTAACGAACTTATTTCAAGGGACGAGGCACTTCACAC 133647
| | | ||||| ||| || |||||||| ||||| || | || |||| | |||||
Sbjct 73012 TCTGATGCCTGGTCTGACCTTCTCTAACGAGCTTATCTCCCGTGATGAGGGTTTGCACAC 73071
Query 133648 CGAATTTGC 133656
|| |||||
Sbjct 73072 AGATTTTGC 73080
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1471807020851057
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