Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Davidsoniella_20virescens_20[genbank_20GCA_5F001513805.1_202016-01- 13] 561 sequences; 33,427,969 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq85 197 2e-44 seq105 187 3e-41 seq250 123 3e-22 >seq85 Length=153405 Score = 197 bits (218), Expect = 2e-44 Identities = 312/447 (70%), Gaps = 15/447 (3%) Strand=Plus/Minus Query 1630065 CTGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGA 1630124 ||||||||||||||| || |||| ||| ||||| || |||||||| || | |||||| || Sbjct 95726 CTGGTCGACGTAGCGGGCAGTGTTGTTGAAGACACGCAGCATGGGAACAATGCCGTTAGA 95667 Query 1630125 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCC 1630184 | |||||||||||| || | ||| | ||| | ||| || | ||| || | || Sbjct 95666 CGTGCCGTTGGTGCCAGCAATGTACGAGCCAGTGGCACGGATACGGTGGACGTTCAGACC 95607 Query 1630185 GATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCCTC 1630244 ||| ||||||||| ||||||||| | || || || ||||| |||||||| || || Sbjct 95606 GATACCGCCGGCCATCTTGGAGATCATAGCACAAGTCTTCAGCGTATCGTAGATACCATC 95547 Query 1630245 GATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGTGCC 1630304 || |||| ||||||| || || || ||||||||||| || | |||| ||||| Sbjct 95546 AATGCTGTCGTCCTTCATATCAACTAGGAAGCACGACGATAGCTGGGCCTGCGGTGTGCC 95487 Query 1630305 GGCGTTGAAGAGCGTGGGCGTCGCCGCGGTGAACAACTGCCGCGACATGGCGTCGTAGGT 1630364 |||||||| |||||||||| || ||||| |||| | |||||| || ||| || Sbjct 95486 AGCGTTGAATAGCGTGGGCGAGGCGTGTGTGAAGAACTTGCTTGACATGTAGTTGTAAGT 95427 Query 1630365 GGCGAGCACGCGCGCCAGCGCATCGTCCACGTCGGCAAACCCATAGTGGCCGATGGCGAC 1630424 ||||||| || ||| ||| ||| | ||| || ||| | ||| || Sbjct 95426 CTCGAGCACACG------------GTCAACG-CGGTCACCCC--AGATGCCAACGGCCAC 95382 Query 1630425 GCGCATGAGCATGTACTGGGGCCGCTCGACGACGACGCCGCGCACCTTGGTCAGGTAGGA 1630484 ||||||| ||||| ||| || |||||||| | |||| | ||| |||||| || Sbjct 95381 ACGCATGATCATGTGCTGCGGACGCTCGACAATCTTGCCGTCTAGCTTAAGCAGGTACGA 95322 Query 1630485 CCGGCGCATGGTCATGAGGCCAAAGTA 1630511 || | |||| ||| ||||||||| Sbjct 95321 ACGCTCTAGGGTCTTGAAGCCAAAGTA 95295 Score = 95.1 bits (104), Expect = 1e-13 Identities = 94/122 (77%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 1627360 AGCACGCGGCGCGTGTAGATGTTGTTGGTGATGACCTCGCACGCCTCGGTGTTGCCCAGG 1627419 ||||| |||||| ||||||||| |||| |||| | |||| ||||||| ||| Sbjct 96754 AGCACACGGCGCTGGTAGATGTTCGAGGTGTAAGGCTCGAAGCACTCGTTGTTGCCTAGG 96695 Query 1627420 ATCTGCGACGTCGTGGCCGTGGGCATGAGCGCCACGAGGAGCGAGTTGCGCAGGCCGTGC 1627479 ||||| || |||| ||| || ||||| | |||| ||| ||||||||||||| ||||||| Sbjct 96694 ATCTGAGAGGTCGAGGCAGTTGGCATAGGAGCCAGGAGTAGCGAGTTGCGCACGCCGTGC 96635 Query 1627480 TG 1627481 || Sbjct 96634 TG 96633 Score = 93.3 bits (102), Expect = 5e-13 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 1627870 TCGGCGAGGCCCTGCACGCCGACGCCCATCGGCCGGTGGCGCAGGTTCGAGTGGCGGGCC 1627929 ||||| || ||||| || || || || || || || || |||| ||| || | | ||| Sbjct 96394 TCGGCTAGACCCTGGACACCAACACCAATGGGGCGATGACGCATGTTGCTGTTGTGAGCC 96335 Query 1627930 TCGGGCACCGGGTAGTGGTTGATGTCGATCACGCGGTTGAGGTTGCCCACCACGACCTGG 1627989 || ||||| ||||||||||||| ||||| | ||| || ||||| | ||| || |||| | Sbjct 96334 TCAGGCACAGGGTAGTGGTTGACATCGATAATGCGATTCAGGTTACGCACGACCACCTTG 96275 Query 1627990 ACGATCTCGTGCAG 1628003 |||||||||||| Sbjct 96274 GTGATCTCGTGCAG 96261 Score = 91.5 bits (100), Expect = 2e-12 Identities = 97/128 (76%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 1628465 TCCACAGTGCGTAAAAGAGGTCGCGCGCCCGGTTCTCCTCCTTGCCGTGGTTCTTTTTGA 1628524 |||||||||| || || || || || || |||||||||||||||||||||| | Sbjct 95862 TCCACAGTGCTAGGAACAGATCACGGGCACGAATCTCCTCCTTGCCGTGGTTCTTGCGCA 95803 Query 1628525 GGTCGAGCCAGTCGACAATGTCGGCGTGCCACGGCTCCAGGTAGCAGGCAAAGGCGCCCT 1628584 | || || | |||| | ||||||||||||||||||||||| ||||||||| || Sbjct 95802 GATCAAGGAACTCGAACACATCGGCGTGCCACGGCTCCAGGTAAATGGCAAAGGCACCGG 95743 Query 1628585 TGCGCTTG 1628592 ||||||| Sbjct 95742 GGCGCTTG 95735 >seq105 Length=277265 Score = 187 bits (206), Expect = 3e-41 Identities = 279/394 (71%), Gaps = 8/394 (2%) Strand=Plus/Minus Query 18096 CTTTGGCGAGTCGCACGGGGCGGGCGTCGGCTGCATCATCGACGGCGTGCCGCCGTGCAT 18155 ||| || ||||||||||| || || ||||||||||||||| | ||||||| || | Sbjct 1371 CTTCGGTGAGTCGCACGGCAAGGCTGTGGGCTGCATCATCGACAACCCGCCGCCGGGCCT 1312 Query 18156 GCCACTGGCCGAGGCCGACATCCAGCCTCAGTTGGATCGGCGCCGACCGGGCCAGGGCGC 18215 | ||| |||||||||| |||||||||||| || |||||||| || |||||| | | Sbjct 1311 TGCTCTGACCGAGGCCGATATCCAGCCTCAGCTGACCCGGCGCCGGCCCGGCCAGAGTTC 1252 Query 18216 ACTTTCCACGCCGCGCAACGAGCCCGATCGCGTCATCATCCAGTCGGGCACGGAGAACGG 18275 | |||| || |||||||| || || || | ||||| || ||| ||| ||| Sbjct 1251 CATCACCACTCCACGCAACGAAAAGGACCGTGTGACCATCCTATCCGGCTGCGAGTTCGG 1192 Query 18276 CCTCACGCTCGGCTCGCCCGTCGGCCTCTTTGTGGCCAACCGCGACCAGCGGCCCGTCGA 18335 || ||| || ||| | || | | ||| || |||| |||||||| ||| || Sbjct 1191 CCGCACTCTAGGCACCCCGATTGCCCTGACCGTCAACAACGAGGACCAGCGTCCCAAGGA 1132 Query 18336 CTATTCCGA------CATGTGCAAGGTGCCGCGGCCCTCACACGCCGACTACACCTACAT 18389 ||| | | |||| |||| | || || || ||||||||||||| ||||||| Sbjct 1131 CTACGGCAACCAGACCATGGACAAGTTCCCTCGCCCTTCACACGCCGACTTCACCTACCA 1072 Query 18390 GGCCAAGTACGGCATCAAGGCGTCGTCGGGCGGAGGCCGGTCGT-CTGCCCGCGAGACCC 18448 || ||||||||||||||||| || || ||||| |||| || || || ||||||||| Sbjct 1071 GGAAAAGTACGGCATCAAGGCTTCATCCGGCGGTGGCC-GTAGTAGCGCTCGCGAGACCA 1013 Query 18449 TCATGCGCGTCGCCGCCGGCGCGGTCGCCGAGAA 18482 | ||||| || ||||| || || |||||||| Sbjct 1012 TTGCTCGCGTAGCTGCCGGTGCCGTGGCCGAGAA 979 >seq250 Length=91439 Score = 123 bits (136), Expect = 3e-22 Identities = 92/108 (85%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 1592186 GCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAAC 1592245 ||| ||||||| ||||| ||||||||| || | ||| | || |||||| |||| |||||| Sbjct 33381 GCCTCCAACTATCTCGATATCAAGCCTTTGTTAGATGTCGGCTGCAAGACTGTCGCCAAC 33440 Query 1592246 ATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATC 1592293 ||||||||||||||||| ||||| ||||| || |||||||| |||||| Sbjct 33441 ATGATCAAGGGCAAGTCTCCCGAAGAGATTCGTAAGACCTTCAACATC 33488 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6107093161712837