Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Davidsoniella_20virescens_20[genbank_20GCA_5F001513805.1_202016-01-
13] 561 sequences; 33,427,969 total letters
Query= NC_021858.1
Length=1908524
Score E
Sequences producing significant alignments: (Bits) Value
seq85 197 2e-44
seq105 187 3e-41
seq250 123 3e-22
>seq85
Length=153405
Score = 197 bits (218), Expect = 2e-44
Identities = 312/447 (70%), Gaps = 15/447 (3%)
Strand=Plus/Minus
Query 1630065 CTGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGA 1630124
||||||||||||||| || |||| ||| ||||| || |||||||| || | |||||| ||
Sbjct 95726 CTGGTCGACGTAGCGGGCAGTGTTGTTGAAGACACGCAGCATGGGAACAATGCCGTTAGA 95667
Query 1630125 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCC 1630184
| |||||||||||| || | ||| | ||| | ||| || | ||| || | ||
Sbjct 95666 CGTGCCGTTGGTGCCAGCAATGTACGAGCCAGTGGCACGGATACGGTGGACGTTCAGACC 95607
Query 1630185 GATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCCTC 1630244
||| ||||||||| ||||||||| | || || || ||||| |||||||| || ||
Sbjct 95606 GATACCGCCGGCCATCTTGGAGATCATAGCACAAGTCTTCAGCGTATCGTAGATACCATC 95547
Query 1630245 GATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGTGCC 1630304
|| |||| ||||||| || || || ||||||||||| || | |||| |||||
Sbjct 95546 AATGCTGTCGTCCTTCATATCAACTAGGAAGCACGACGATAGCTGGGCCTGCGGTGTGCC 95487
Query 1630305 GGCGTTGAAGAGCGTGGGCGTCGCCGCGGTGAACAACTGCCGCGACATGGCGTCGTAGGT 1630364
|||||||| |||||||||| || ||||| |||| | |||||| || ||| ||
Sbjct 95486 AGCGTTGAATAGCGTGGGCGAGGCGTGTGTGAAGAACTTGCTTGACATGTAGTTGTAAGT 95427
Query 1630365 GGCGAGCACGCGCGCCAGCGCATCGTCCACGTCGGCAAACCCATAGTGGCCGATGGCGAC 1630424
||||||| || ||| ||| ||| | ||| || ||| | ||| ||
Sbjct 95426 CTCGAGCACACG------------GTCAACG-CGGTCACCCC--AGATGCCAACGGCCAC 95382
Query 1630425 GCGCATGAGCATGTACTGGGGCCGCTCGACGACGACGCCGCGCACCTTGGTCAGGTAGGA 1630484
||||||| ||||| ||| || |||||||| | |||| | ||| |||||| ||
Sbjct 95381 ACGCATGATCATGTGCTGCGGACGCTCGACAATCTTGCCGTCTAGCTTAAGCAGGTACGA 95322
Query 1630485 CCGGCGCATGGTCATGAGGCCAAAGTA 1630511
|| | |||| ||| |||||||||
Sbjct 95321 ACGCTCTAGGGTCTTGAAGCCAAAGTA 95295
Score = 95.1 bits (104), Expect = 1e-13
Identities = 94/122 (77%), Gaps = 0/122 (0%)
Strand=Plus/Minus
Query 1627360 AGCACGCGGCGCGTGTAGATGTTGTTGGTGATGACCTCGCACGCCTCGGTGTTGCCCAGG 1627419
||||| |||||| ||||||||| |||| |||| | |||| ||||||| |||
Sbjct 96754 AGCACACGGCGCTGGTAGATGTTCGAGGTGTAAGGCTCGAAGCACTCGTTGTTGCCTAGG 96695
Query 1627420 ATCTGCGACGTCGTGGCCGTGGGCATGAGCGCCACGAGGAGCGAGTTGCGCAGGCCGTGC 1627479
||||| || |||| ||| || ||||| | |||| ||| ||||||||||||| |||||||
Sbjct 96694 ATCTGAGAGGTCGAGGCAGTTGGCATAGGAGCCAGGAGTAGCGAGTTGCGCACGCCGTGC 96635
Query 1627480 TG 1627481
||
Sbjct 96634 TG 96633
Score = 93.3 bits (102), Expect = 5e-13
Identities = 101/134 (75%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 1627870 TCGGCGAGGCCCTGCACGCCGACGCCCATCGGCCGGTGGCGCAGGTTCGAGTGGCGGGCC 1627929
||||| || ||||| || || || || || || || || |||| ||| || | | |||
Sbjct 96394 TCGGCTAGACCCTGGACACCAACACCAATGGGGCGATGACGCATGTTGCTGTTGTGAGCC 96335
Query 1627930 TCGGGCACCGGGTAGTGGTTGATGTCGATCACGCGGTTGAGGTTGCCCACCACGACCTGG 1627989
|| ||||| ||||||||||||| ||||| | ||| || ||||| | ||| || |||| |
Sbjct 96334 TCAGGCACAGGGTAGTGGTTGACATCGATAATGCGATTCAGGTTACGCACGACCACCTTG 96275
Query 1627990 ACGATCTCGTGCAG 1628003
||||||||||||
Sbjct 96274 GTGATCTCGTGCAG 96261
Score = 91.5 bits (100), Expect = 2e-12
Identities = 97/128 (76%), Gaps = 0/128 (0%)
Strand=Plus/Minus
Query 1628465 TCCACAGTGCGTAAAAGAGGTCGCGCGCCCGGTTCTCCTCCTTGCCGTGGTTCTTTTTGA 1628524
|||||||||| || || || || || || |||||||||||||||||||||| |
Sbjct 95862 TCCACAGTGCTAGGAACAGATCACGGGCACGAATCTCCTCCTTGCCGTGGTTCTTGCGCA 95803
Query 1628525 GGTCGAGCCAGTCGACAATGTCGGCGTGCCACGGCTCCAGGTAGCAGGCAAAGGCGCCCT 1628584
| || || | |||| | ||||||||||||||||||||||| ||||||||| ||
Sbjct 95802 GATCAAGGAACTCGAACACATCGGCGTGCCACGGCTCCAGGTAAATGGCAAAGGCACCGG 95743
Query 1628585 TGCGCTTG 1628592
|||||||
Sbjct 95742 GGCGCTTG 95735
>seq105
Length=277265
Score = 187 bits (206), Expect = 3e-41
Identities = 279/394 (71%), Gaps = 8/394 (2%)
Strand=Plus/Minus
Query 18096 CTTTGGCGAGTCGCACGGGGCGGGCGTCGGCTGCATCATCGACGGCGTGCCGCCGTGCAT 18155
||| || ||||||||||| || || ||||||||||||||| | ||||||| || |
Sbjct 1371 CTTCGGTGAGTCGCACGGCAAGGCTGTGGGCTGCATCATCGACAACCCGCCGCCGGGCCT 1312
Query 18156 GCCACTGGCCGAGGCCGACATCCAGCCTCAGTTGGATCGGCGCCGACCGGGCCAGGGCGC 18215
| ||| |||||||||| |||||||||||| || |||||||| || |||||| | |
Sbjct 1311 TGCTCTGACCGAGGCCGATATCCAGCCTCAGCTGACCCGGCGCCGGCCCGGCCAGAGTTC 1252
Query 18216 ACTTTCCACGCCGCGCAACGAGCCCGATCGCGTCATCATCCAGTCGGGCACGGAGAACGG 18275
| |||| || |||||||| || || || | ||||| || ||| ||| |||
Sbjct 1251 CATCACCACTCCACGCAACGAAAAGGACCGTGTGACCATCCTATCCGGCTGCGAGTTCGG 1192
Query 18276 CCTCACGCTCGGCTCGCCCGTCGGCCTCTTTGTGGCCAACCGCGACCAGCGGCCCGTCGA 18335
|| ||| || ||| | || | | ||| || |||| |||||||| ||| ||
Sbjct 1191 CCGCACTCTAGGCACCCCGATTGCCCTGACCGTCAACAACGAGGACCAGCGTCCCAAGGA 1132
Query 18336 CTATTCCGA------CATGTGCAAGGTGCCGCGGCCCTCACACGCCGACTACACCTACAT 18389
||| | | |||| |||| | || || || ||||||||||||| |||||||
Sbjct 1131 CTACGGCAACCAGACCATGGACAAGTTCCCTCGCCCTTCACACGCCGACTTCACCTACCA 1072
Query 18390 GGCCAAGTACGGCATCAAGGCGTCGTCGGGCGGAGGCCGGTCGT-CTGCCCGCGAGACCC 18448
|| ||||||||||||||||| || || ||||| |||| || || || |||||||||
Sbjct 1071 GGAAAAGTACGGCATCAAGGCTTCATCCGGCGGTGGCC-GTAGTAGCGCTCGCGAGACCA 1013
Query 18449 TCATGCGCGTCGCCGCCGGCGCGGTCGCCGAGAA 18482
| ||||| || ||||| || || ||||||||
Sbjct 1012 TTGCTCGCGTAGCTGCCGGTGCCGTGGCCGAGAA 979
>seq250
Length=91439
Score = 123 bits (136), Expect = 3e-22
Identities = 92/108 (85%), Gaps = 0/108 (0%)
Strand=Plus/Plus
Query 1592186 GCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAAC 1592245
||| ||||||| ||||| ||||||||| || | ||| | || |||||| |||| ||||||
Sbjct 33381 GCCTCCAACTATCTCGATATCAAGCCTTTGTTAGATGTCGGCTGCAAGACTGTCGCCAAC 33440
Query 1592246 ATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATC 1592293
||||||||||||||||| ||||| ||||| || |||||||| ||||||
Sbjct 33441 ATGATCAAGGGCAAGTCTCCCGAAGAGATTCGTAAGACCTTCAACATC 33488
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 6107093161712837
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |